Lineage for Protein: PA N-terminal domain

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2459948Fold c.52: Restriction endonuclease-like [52979] (4 superfamilies)
    core: 3 layers, a/b/a; mixed beta-sheet of 5 strands, order 12345; strands 2 &, in some families, 5 are antiparallel to the rest
  4. 2459949Superfamily c.52.1: Restriction endonuclease-like [52980] (37 families) (S)
  5. 2460385Family c.52.1.34: PA N-terminal domain [254166] (2 proteins)
    Pfam PF00603; relationship to endonucleases discussed in PubMed 19194458
  6. 2460386Protein PA N-terminal domain [254375] (6 species)

Species:

  1. 2460387Influenza A virus (a/lima/wrair1695p/2009(h1n1)) [TaxId:985958] [256341] (11 PDB entries)
    1. Domain for 4kil:
    2. Domain for 4ln7:
    3. Domain for 4m4q:
    4. Domain for 4m5o:
    5. Domain for 4m5q:
    6. Domain for 4m5r:
    7. Domain for 4m5u:
    8. Domain for 4m5v:
    9. Domain for 4mk1:
    10. Domain for 4mk2:
    11. Domain for 4mk5:
  2. 2460399Influenza A virus (strain a/puerto rico/8/1934 h1n1) [TaxId:211044] [272056] (5 PDB entries)
    1. Domain for 4yyl:
    2. Domain for 4zhz:
    3. Domain for 4zi0:
    4. Domain for 4zqq:
    5. Domain for 5i13:
  3. 2460405Influenza A virus [TaxId:1305075] [280128] (1 PDB entry)
  4. 2460407Influenza A virus [TaxId:387207] [260115] (1 PDB entry)
  5. 2460409Influenza A virus [TaxId:93838] [254808] (62 PDB entries)
    1. Domains for 3ebj:
      1. 2460424Domain d3ebja1: 3ebj A:1-197 [245817]
        Other proteins in same PDB: d3ebja2, d3ebjb2, d3ebjc2, d3ebjd2
        complexed with mg
      2. 2460425Domain d3ebjb1: 3ebj B:1-195 [245818]
        Other proteins in same PDB: d3ebja2, d3ebjb2, d3ebjc2, d3ebjd2
        complexed with mg
      3. 2460426Domain d3ebjc1: 3ebj C:1-197 [245819]
        Other proteins in same PDB: d3ebja2, d3ebjb2, d3ebjc2, d3ebjd2
        complexed with mg
      4. 2460427Domain d3ebjd1: 3ebj D:1-197 [245820]
        Other proteins in same PDB: d3ebja2, d3ebjb2, d3ebjc2, d3ebjd2
        complexed with mg
    2. Domains for 3hw3:
      1. 2460418Domain d3hw3a1: 3hw3 A:1-198 [246582]
        Other proteins in same PDB: d3hw3a2, d3hw3b2, d3hw3c2, d3hw3d2
        automated match to d3ebja_
        complexed with mg, u5p
      2. 2460419Domain d3hw3b1: 3hw3 B:1-197 [246583]
        Other proteins in same PDB: d3hw3a2, d3hw3b2, d3hw3c2, d3hw3d2
        automated match to d3ebja_
        complexed with mg, u5p
      3. 2460420Domain d3hw3c1: 3hw3 C:1-197 [246584]
        Other proteins in same PDB: d3hw3a2, d3hw3b2, d3hw3c2, d3hw3d2
        automated match to d3ebja_
        complexed with mg, u5p
      4. 2460421Domain d3hw3d1: 3hw3 D:1-197 [246585]
        Other proteins in same PDB: d3hw3a2, d3hw3b2, d3hw3c2, d3hw3d2
        automated match to d3ebja_
        complexed with mg, u5p
    3. Domains for 3hw4:
      1. 2460414Domain d3hw4a1: 3hw4 A:1-198 [246586]
        Other proteins in same PDB: d3hw4a2, d3hw4b2, d3hw4c2, d3hw4d2
        automated match to d3ebja_
        complexed with mg, tmp
      2. 2460415Domain d3hw4b1: 3hw4 B:1-197 [246587]
        Other proteins in same PDB: d3hw4a2, d3hw4b2, d3hw4c2, d3hw4d2
        automated match to d3ebja_
        complexed with mg, tmp
      3. 2460416Domain d3hw4c1: 3hw4 C:1-197 [246588]
        Other proteins in same PDB: d3hw4a2, d3hw4b2, d3hw4c2, d3hw4d2
        automated match to d3ebja_
        complexed with mg, tmp
      4. 2460417Domain d3hw4d1: 3hw4 D:1-197 [246589]
        Other proteins in same PDB: d3hw4a2, d3hw4b2, d3hw4c2, d3hw4d2
        automated match to d3ebja_
        complexed with mg, tmp
    4. Domains for 3hw5:
      1. 2460410Domain d3hw5a1: 3hw5 A:1-198 [246590]
        Other proteins in same PDB: d3hw5a2, d3hw5b2, d3hw5c2, d3hw5d2
        automated match to d3ebja_
        complexed with amp, mg
      2. 2460411Domain d3hw5b1: 3hw5 B:1-197 [246591]
        Other proteins in same PDB: d3hw5a2, d3hw5b2, d3hw5c2, d3hw5d2
        automated match to d3ebja_
        complexed with amp, mg
      3. 2460412Domain d3hw5c1: 3hw5 C:1-197 [246592]
        Other proteins in same PDB: d3hw5a2, d3hw5b2, d3hw5c2, d3hw5d2
        automated match to d3ebja_
        complexed with amp, mg
      4. 2460413Domain d3hw5d1: 3hw5 D:1-197 [246593]
        Other proteins in same PDB: d3hw5a2, d3hw5b2, d3hw5c2, d3hw5d2
        automated match to d3ebja_
        complexed with amp, mg
    5. Domains for 3hw6:
      1. 2460453Domain d3hw6a1: 3hw6 A:1-197 [246594]
        Other proteins in same PDB: d3hw6a2, d3hw6b2, d3hw6c2, d3hw6d2
        automated match to d3ebja_
        complexed with mn
      2. 2460454Domain d3hw6b1: 3hw6 B:1-197 [246595]
        Other proteins in same PDB: d3hw6a2, d3hw6b2, d3hw6c2, d3hw6d2
        automated match to d3ebja_
        complexed with mn
      3. 2460455Domain d3hw6c1: 3hw6 C:1-197 [246596]
        Other proteins in same PDB: d3hw6a2, d3hw6b2, d3hw6c2, d3hw6d2
        automated match to d3ebja_
        complexed with mn
      4. 2460456Domain d3hw6d1: 3hw6 D:1-197 [246597]
        Other proteins in same PDB: d3hw6a2, d3hw6b2, d3hw6c2, d3hw6d2
        automated match to d3ebja_
        complexed with mn
    6. Domains for 4e5e:
      1. 2460431Domain d4e5ea_: 4e5e A: [251665]
        automated match to d3ebja_
        complexed with mn, so4
      2. 2460432Domain d4e5eb_: 4e5e B: [251666]
        automated match to d3ebja_
        complexed with mn, so4
      3. 2460433Domain d4e5ec_: 4e5e C: [251667]
        automated match to d3ebja_
        complexed with mn, so4
      4. 2460434Domain d4e5ed_: 4e5e D: [251668]
        automated match to d3ebja_
        complexed with mn, so4
    7. Domains for 4e5f:
      1. 2460457Domain d4e5fa_: 4e5f A: [251669]
        automated match to d3ebja_
        complexed with 0n7, mn, so4
      2. 2460458Domain d4e5fb_: 4e5f B: [251670]
        automated match to d3ebja_
        complexed with 0n7, mn, so4
      3. 2460459Domain d4e5fc_: 4e5f C: [251671]
        automated match to d3ebja_
        complexed with 0n7, mn, so4
      4. 2460460Domain d4e5fd_: 4e5f D: [251672]
        automated match to d3ebja_
        complexed with 0n7, mn, so4
    8. Domains for 4e5g:
      1. 2460466Domain d4e5ga_: 4e5g A: [251673]
        automated match to d3ebja_
        complexed with mn, so4, xi7
      2. 2460467Domain d4e5gb_: 4e5g B: [251674]
        automated match to d3ebja_
        complexed with mn, so4, xi7
      3. 2460468Domain d4e5gc_: 4e5g C: [251675]
        automated match to d3ebja_
        complexed with mn, so4, xi7
      4. 2460469Domain d4e5gd_: 4e5g D: [251676]
        automated match to d3ebja_
        complexed with mn, so4, xi7
    9. Domains for 4e5h:
      1. 2460442Domain d4e5ha_: 4e5h A: [251677]
        automated match to d3ebja_
        complexed with 0n8, mn, so4
      2. 2460443Domain d4e5hb_: 4e5h B: [251678]
        automated match to d3ebja_
        complexed with 0n8, mn, so4
      3. 2460444Domain d4e5hc_: 4e5h C: [251679]
        automated match to d3ebja_
        complexed with 0n8, mn, so4
      4. 2460445Domain d4e5hd_: 4e5h D: [251680]
        automated match to d3ebja_
        complexed with 0n8, mn, so4
    10. Domains for 4e5i:
      1. 2460475Domain d4e5ia_: 4e5i A: [251681]
        automated match to d3ebja_
        complexed with 0n9, mn, so4
      2. 2460476Domain d4e5ib_: 4e5i B: [251682]
        automated match to d3ebja_
        complexed with 0n9, mn, so4
      3. 2460477Domain d4e5ic_: 4e5i C: [251683]
        automated match to d3ebja_
        complexed with 0n9, mn, so4
      4. 2460478Domain d4e5id_: 4e5i D: [251684]
        automated match to d3ebja_
        complexed with 0n9, mn, so4
    11. Domains for 4e5j:
      1. 2460449Domain d4e5ja1: 4e5j A:1-199 [251685]
        Other proteins in same PDB: d4e5ja2
        automated match to d3ebja_
        complexed with 581, mn, so4
      2. 2460450Domain d4e5jb_: 4e5j B: [251686]
        Other proteins in same PDB: d4e5ja2
        automated match to d3ebja_
        complexed with 581, mn, so4
      3. 2460451Domain d4e5jc_: 4e5j C: [251687]
        Other proteins in same PDB: d4e5ja2
        automated match to d3ebja_
        complexed with 581, mn, so4
      4. 2460452Domain d4e5jd_: 4e5j D: [251688]
        Other proteins in same PDB: d4e5ja2
        automated match to d3ebja_
        complexed with 581, mn, so4
    12. Domains for 4e5l:
      1. 2460461Domain d4e5la_: 4e5l A: [251689]
        automated match to d3ebja_
        complexed with dbh, mn, so4
      2. 2460462Domain d4e5lb_: 4e5l B: [251690]
        automated match to d3ebja_
        complexed with dbh, mn, so4
      3. 2460463Domain d4e5lc_: 4e5l C: [251691]
        automated match to d3ebja_
        complexed with dbh, mn, so4
      4. 2460464Domain d4e5ld_: 4e5l D: [251692]
        automated match to d3ebja_
        complexed with dbh, mn, so4
    13. Domains for 4nfz:
      1. 2460472Domain d4nfza_: 4nfz A: [253949]
        automated match to d3ebja_
        complexed with mn
      2. 2460473Domain d4nfzb_: 4nfz B: [253950]
        automated match to d3ebja_
        complexed with mn
      3. 2460474Domain d4nfzc_: 4nfz C: [253951]
        automated match to d3ebja_
        complexed with mn
    14. Domain for 5ccy:
    15. Domain for 5cgv:
    16. Domain for 5cl0:
    17. Domain for 5czn:
    18. Domain for 5d2o:
    19. Domain for 5d42:
    20. Domain for 5d4g:
    21. Domain for 5d8u:
    22. Domain for 5d9j:
    23. Domain for 5dbs:
    24. Domain for 5deb:
    25. Domain for 5des:
    26. Domain for 5ega:
    27. Domain for 5fdd:
    28. Domain for 5fdg:
    29. Domain for 5jht:
    30. Domains for 5jhv:
      1. 2460470Domain d5jhva1: 5jhv A:1-196 [317271]
        Other proteins in same PDB: d5jhva2, d5jhvb2
        automated match to d4e5ed_
        complexed with mn
      2. 2460471Domain d5jhvb1: 5jhv B:1-196 [317282]
        Other proteins in same PDB: d5jhva2, d5jhvb2
        automated match to d4e5ed_
        complexed with mn
    31. Domain for 5vp8:
    32. Domain for 5vpt:
    33. Domain for 5vpx:
    34. Domain for 5vqn:
    35. Domain for 5vrj:
    36. Domain for 5w3i:
    37. Domain for 5w44:
    38. Domain for 5w73:
    39. Domain for 5w7u:
    40. Domain for 5w92:
    41. Domain for 5w9g:
    42. Domain for 5wa6:
    43. Domain for 5wa7:
    44. Domain for 5wap:
    45. Domain for 5wb3:
    46. Domain for 5wcs:
    47. Domain for 5wct:
    48. Domain for 5wdc:
    49. Domain for 5wdn:
    50. Domain for 5wdw:
    51. Domain for 5we7:
    52. Domain for 5we9:
    53. Domain for 5web:
    54. Domain for 5wef:
    55. Domain for 5wei:
    56. Domain for 5wf3:
    57. Domain for 5wfm:
    58. Domain for 5wfw:
    59. Domain for 5wfz:
    60. Domain for 5wg9:
    61. Domains for 6fs6:
      1. 3054495Domain d6fs6e1: 6fs6 E:1-198 [354557]
        Other proteins in same PDB: d6fs6a2, d6fs6b2, d6fs6c2, d6fs6d2, d6fs6e2, d6fs6f2
        automated match to d4e5ec_
        complexed with e4z, mn
      2. 3054513Domain d6fs6c1: 6fs6 C:1-198 [354575]
        Other proteins in same PDB: d6fs6a2, d6fs6b2, d6fs6c2, d6fs6d2, d6fs6e2, d6fs6f2
        automated match to d4e5ec_
        complexed with e4z, mn
      3. 3054554Domain d6fs6b1: 6fs6 B:1-198 [354616]
        Other proteins in same PDB: d6fs6a2, d6fs6b2, d6fs6c2, d6fs6d2, d6fs6e2, d6fs6f2
        automated match to d4e5ec_
        complexed with e4z, mn
      4. 3054558Domain d6fs6f1: 6fs6 F:1-198 [354620]
        Other proteins in same PDB: d6fs6a2, d6fs6b2, d6fs6c2, d6fs6d2, d6fs6e2, d6fs6f2
        automated match to d4e5ec_
        complexed with e4z, mn
      5. 3054598Domain d6fs6a1: 6fs6 A:1-198 [354660]
        Other proteins in same PDB: d6fs6a2, d6fs6b2, d6fs6c2, d6fs6d2, d6fs6e2, d6fs6f2
        automated match to d4e5ec_
        complexed with e4z, mn
      6. 3054657Domain d6fs6d1: 6fs6 D:1-198 [354719]
        Other proteins in same PDB: d6fs6a2, d6fs6b2, d6fs6c2, d6fs6d2, d6fs6e2, d6fs6f2
        automated match to d4e5ec_
        complexed with e4z, mn
    62. Domains for 6fs7:
      1. 3054471Domain d6fs7f1: 6fs7 F:1-198 [354533]
        Other proteins in same PDB: d6fs7a2, d6fs7b2, d6fs7c2, d6fs7d2, d6fs7e2, d6fs7f2
        automated match to d4e5ea_
        complexed with e4z, mn; mutant
      2. 3054475Domain d6fs7d1: 6fs7 D:1-198 [354537]
        Other proteins in same PDB: d6fs7a2, d6fs7b2, d6fs7c2, d6fs7d2, d6fs7e2, d6fs7f2
        automated match to d4e5ea_
        complexed with e4z, mn; mutant
      3. 3054503Domain d6fs7c1: 6fs7 C:1-198 [354565]
        Other proteins in same PDB: d6fs7a2, d6fs7b2, d6fs7c2, d6fs7d2, d6fs7e2, d6fs7f2
        automated match to d4e5ea_
        complexed with e4z, mn; mutant
      4. 3054561Domain d6fs7a1: 6fs7 A:1-198 [354623]
        Other proteins in same PDB: d6fs7a2, d6fs7b2, d6fs7c2, d6fs7d2, d6fs7e2, d6fs7f2
        automated match to d4e5ea_
        complexed with e4z, mn; mutant
      5. 3054568Domain d6fs7e1: 6fs7 E:1-198 [354630]
        Other proteins in same PDB: d6fs7a2, d6fs7b2, d6fs7c2, d6fs7d2, d6fs7e2, d6fs7f2
        automated match to d4e5ea_
        complexed with e4z, mn; mutant
      6. 3054585Domain d6fs7b1: 6fs7 B:1-198 [354647]
        Other proteins in same PDB: d6fs7a2, d6fs7b2, d6fs7c2, d6fs7d2, d6fs7e2, d6fs7f2
        automated match to d4e5ea_
        complexed with e4z, mn; mutant
  6. 3054466Influenza b virus (b/memphis/13/2003) [TaxId:1601067] [354528] (3 PDB entries)
    1. Domains for 6fs8:
      1. 3054467Domain d6fs8a1: 6fs8 A:1-192 [354529]
        Other proteins in same PDB: d6fs8a2, d6fs8b2
        automated match to d4nfza_
        complexed with e4z, mn
      2. 3054617Domain d6fs8b1: 6fs8 B:1-192 [354679]
        Other proteins in same PDB: d6fs8a2, d6fs8b2
        automated match to d4nfza_
        complexed with e4z, mn
    2. Domain for 6fs9:
    3. Domains for 6fsb:
      1. 3054473Domain d6fsbb1: 6fsb B:1-197 [354535]
        Other proteins in same PDB: d6fsba2, d6fsbb2
        automated match to d4nfza_
        complexed with mg, mn; mutant
      2. 3054479Domain d6fsba1: 6fsb A:1-196 [354541]
        Other proteins in same PDB: d6fsba2, d6fsbb2
        automated match to d4nfza_
        complexed with mg, mn; mutant

More info for Protein PA N-terminal domain from c.52.1.34: PA N-terminal domain

Timeline for Protein PA N-terminal domain from c.52.1.34: PA N-terminal domain: