SCOPe 2.08: Domain d4wsbb_: 4wsb B:

Lineage for d4wsbb_ (4wsb B:)

1. Root: SCOPe 2.08

2. Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds)

3. Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
   divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members

4. Superfamily e.8.1: DNA/RNA polymerases [56672] (9 families)
   "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain

5. Family e.8.1.9: Influenza virus PB1 [418791] (1 protein)
   Pfam PF00602; contains PB1-specific N-terminal and C-terminal extensions and long beta ribbon described in PubMed 25409142
   Part of Pfam PF00604

6. Protein Polymerase basic protein 1, PB1 [419094] (2 species)

7. Species Influenza A virus (strain a/little yellow-shouldered bat/guatemala/060/2010(h17n10)) [TaxId:1129347] [419593] (1 PDB entry)

8. Domain d4wsbb_: 4wsb B: [414422]
   Other proteins in same PDB: d4wsba1, d4wsba2, d4wsba3, d4wsba4, d4wsbc1, d4wsbc2, d4wsbc3, d4wsbc4, d4wsbc5, d4wsbc6, d4wsbc7
   protein/RNA complex; complexed with po4, zn

Details for d4wsbb_

PDB Entry: 4wsb, 2.65 Å

PDB Description: bat influenza a polymerase with bound vrna promoter

PDB Compounds: (B:) RNA-directed RNA polymerase catalytic subunit

SCOPe Domain Sequences for d4wsbb_:

Sequence, based on SEQRES records:

>d4wsbb_ e.8.1.9 (B:) Polymerase basic protein 1, PB1 {Influenza A virus (strain a/little yellow-shouldered bat/guatemala/060/2010(h17n10)) [TaxId: 1129347]}
mdvnpmliflkvpvqnaisttfpytgdppyshgtgtgytmdtvirthdyssrgiwktnse
tgaqqlnpidgplpednepsgyaqtdcvleliegldrshpglfetacqetidaiqqtrvd
kltqgrqtydwtlnrnqpaatalantievfrkngyklnesgrlidflkdvllsfendsme
vtthfqkkkrirdnhskkmitqrtigkkrvkltkknyliraltlntmtkdaergklkrra
iatpgmqirgfvyfvellarnicerleqsglpvggnekkaklanvikkmmakstdeelsy
titgdntkwnenqnpriflamvlritagqpewfrdllavapimfsnkvarlgrgymfesk
smhlrtqisaenlsdinlryfnedtkkkiekirhlmvegtaslspgmmmgmfnmlstvlg
vsvlnlgqreilkrtywwdglqssddfaliinghfkediqqgvnhfyrtcklvginmsqk
ksyinktgtfeftsffyrygfvanfsmelpsfgvagnnesadmsigttviktnminndlg
pataqmaiqlfikdyrytyrchrgdtnletrrtksikrlwtetiskagllvadggpnpyn
lrnlhipevclkwslmdpdyrgrlcnpnnpfvhhmevestnlavvmpahgpaksleydav
atthswtpkrnrsilntnqrgilederiyqkccqvfekffpsstyrrpigmasmldamls
raridaridlesgrissqdfseitntckaiealk

Sequence, based on observed residues (ATOM records):

>d4wsbb_ e.8.1.9 (B:) Polymerase basic protein 1, PB1 {Influenza A virus (strain a/little yellow-shouldered bat/guatemala/060/2010(h17n10)) [TaxId: 1129347]}
mdvnpmliflkvpvqnaisttfpytgdppyshgtgtgytmdtvirthdyssrgiwktnse
tgaqqlnpidgplpednepsgyaqtdcvleliegldrshpglfetacqetidaiqqtrvd
kltqgrqtydwtlnrnqpaatalantievfrkngyklnesgrlidflkdvllsfendsme
vtthfqkkkrirdnmitqrtigkkrvkltkknyliraltlntmtkdaergklkrraiatp
gmqirgfvyfvellarnicerleqsglpvggnekkaklanvikkmmakstdeelsytitg
dntkwnenqnpriflamvlritagqpewfrdllavapimfsnkvarlgrgymfesksmhl
rtqisaenlsdinlryfnedtkkkiekirhlmvegtaslspgmmmgmfnmlstvlgvsvl
nlgqreilkrtywwdglqssddfaliinghfkediqqgvnhfyrtcklvginmsqkksyi
nktgtfftsffyrygfvanfsmelpsfgvagnnesadmsigttviktnminndlgpataq
maiqlfikdyrytyrchrgdtnletrrtksikrlwtetiskagllvadggpnpynlrnlh
ipevclkwslmdpdyrgrlcnpnnpfvhhmevestnlavvmpgpaksleydavatthswt
pkrnrsilntnqrgilederiyqkccqvfekffpsstyrrpigmasmldamlsraridar
idlesgssqdfseitntckaiealk

Timeline for d4wsbb_:

• d4wsbb_ is new in SCOPe 2.08-stable