Lineage for Protein: PA N-terminal domain

  1. Root: SCOPe 2.04
  2. 1565955Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 1604195Fold c.52: Restriction endonuclease-like [52979] (4 superfamilies)
    core: 3 layers, a/b/a; mixed beta-sheet of 5 strands, order 12345; strands 2 &, in some families, 5 are antiparallel to the rest
  4. 1604196Superfamily c.52.1: Restriction endonuclease-like [52980] (35 families) (S)
  5. 1604623Family c.52.1.34: PA N-terminal domain [254166] (2 proteins)
    Pfam PF00603; relationship to endonucleases discussed in PubMed 19194458
  6. 1604624Protein PA N-terminal domain [254375] (3 species)

Species:

  1. 1604625Influenza a virus (a/lima/wrair1695p/2009(h1n1)) [TaxId:985958] [256341] (11 PDB entries)
    1. Domain for 4kil:
    2. Domain for 4ln7:
      • 1604629Domain d4ln7a_: 4ln7 A: [253630]
        automated match to d3ebja_
        protein/RNA complex; complexed with 1zq, edo, mg, mn, so4
    3. Domain for 4m4q:
    4. Domain for 4m5o:
      • 1604634Domain d4m5oa_: 4m5o A: [253752]
        automated match to d3ebja_
        protein/RNA complex; complexed with edo, mn, so4, x48
    5. Domain for 4m5q:
    6. Domain for 4m5r:
      • 1604626Domain d4m5ra_: 4m5r A: [253754]
        automated match to d3ebja_
        protein/RNA complex; complexed with edo, mn, msr, so4
    7. Domain for 4m5u:
    8. Domain for 4m5v:
    9. Domain for 4mk1:
      • 1604632Domain d4mk1a_: 4mk1 A: [253800]
        automated match to d3ebja_
        protein/RNA complex; complexed with 27y, edo, mn, so4
    10. Domain for 4mk2:
      • 1604630Domain d4mk2a_: 4mk2 A: [253801]
        automated match to d3ebja_
        protein/RNA complex; complexed with 28b, edo, mn, so4
    11. Domain for 4mk5:
      • 1604633Domain d4mk5a_: 4mk5 A: [253802]
        automated match to d3ebja_
        protein/RNA complex; complexed with 28a, edo, mn, so4
  2. 1604637Influenza a virus [TaxId:387207] [260115] (1 PDB entry)
  3. 1604639Influenza A virus [TaxId:93838] [254808] (13 PDB entries)
    1. Domains for 3ebj:
      1. 1604660Domain d3ebja_: 3ebj A: [245817]
        complexed with mg
      2. 1604661Domain d3ebjb_: 3ebj B: [245818]
        complexed with mg
      3. 1604662Domain d3ebjc_: 3ebj C: [245819]
        complexed with mg
      4. 1604663Domain d3ebjd_: 3ebj D: [245820]
        complexed with mg
    2. Domains for 3hw3:
      1. 1604648Domain d3hw3a_: 3hw3 A: [246582]
        automated match to d3ebja_
        complexed with mg, u5p
      2. 1604649Domain d3hw3b_: 3hw3 B: [246583]
        automated match to d3ebja_
        complexed with mg, u5p
      3. 1604650Domain d3hw3c_: 3hw3 C: [246584]
        automated match to d3ebja_
        complexed with mg, u5p
      4. 1604651Domain d3hw3d_: 3hw3 D: [246585]
        automated match to d3ebja_
        complexed with mg, u5p
    3. Domains for 3hw4:
      1. 1604644Domain d3hw4a_: 3hw4 A: [246586]
        automated match to d3ebja_
        complexed with mg, tmp
      2. 1604645Domain d3hw4b_: 3hw4 B: [246587]
        automated match to d3ebja_
        complexed with mg, tmp
      3. 1604646Domain d3hw4c_: 3hw4 C: [246588]
        automated match to d3ebja_
        complexed with mg, tmp
      4. 1604647Domain d3hw4d_: 3hw4 D: [246589]
        automated match to d3ebja_
        complexed with mg, tmp
    4. Domains for 3hw5:
      1. 1604640Domain d3hw5a_: 3hw5 A: [246590]
        automated match to d3ebja_
        complexed with amp, mg
      2. 1604641Domain d3hw5b_: 3hw5 B: [246591]
        automated match to d3ebja_
        complexed with amp, mg
      3. 1604642Domain d3hw5c_: 3hw5 C: [246592]
        automated match to d3ebja_
        complexed with amp, mg
      4. 1604643Domain d3hw5d_: 3hw5 D: [246593]
        automated match to d3ebja_
        complexed with amp, mg
    5. Domains for 3hw6:
      1. 1604680Domain d3hw6a_: 3hw6 A: [246594]
        automated match to d3ebja_
        complexed with mn
      2. 1604681Domain d3hw6b_: 3hw6 B: [246595]
        automated match to d3ebja_
        complexed with mn
      3. 1604682Domain d3hw6c_: 3hw6 C: [246596]
        automated match to d3ebja_
        complexed with mn
      4. 1604683Domain d3hw6d_: 3hw6 D: [246597]
        automated match to d3ebja_
        complexed with mn
    6. Domains for 4e5e:
      1. 1604652Domain d4e5ea_: 4e5e A: [251665]
        automated match to d3ebja_
        complexed with mn, so4
      2. 1604653Domain d4e5eb_: 4e5e B: [251666]
        automated match to d3ebja_
        complexed with mn, so4
      3. 1604654Domain d4e5ec_: 4e5e C: [251667]
        automated match to d3ebja_
        complexed with mn, so4
      4. 1604655Domain d4e5ed_: 4e5e D: [251668]
        automated match to d3ebja_
        complexed with mn, so4
    7. Domains for 4e5f:
      1. 1604664Domain d4e5fa_: 4e5f A: [251669]
        automated match to d3ebja_
        complexed with 0n7, mn, so4
      2. 1604665Domain d4e5fb_: 4e5f B: [251670]
        automated match to d3ebja_
        complexed with 0n7, mn, so4
      3. 1604666Domain d4e5fc_: 4e5f C: [251671]
        automated match to d3ebja_
        complexed with 0n7, mn, so4
      4. 1604667Domain d4e5fd_: 4e5f D: [251672]
        automated match to d3ebja_
        complexed with 0n7, mn, so4
    8. Domains for 4e5g:
      1. 1604676Domain d4e5ga_: 4e5g A: [251673]
        automated match to d3ebja_
        complexed with mn, so4, xi7
      2. 1604677Domain d4e5gb_: 4e5g B: [251674]
        automated match to d3ebja_
        complexed with mn, so4, xi7
      3. 1604678Domain d4e5gc_: 4e5g C: [251675]
        automated match to d3ebja_
        complexed with mn, so4, xi7
      4. 1604679Domain d4e5gd_: 4e5g D: [251676]
        automated match to d3ebja_
        complexed with mn, so4, xi7
    9. Domains for 4e5h:
      1. 1604656Domain d4e5ha_: 4e5h A: [251677]
        automated match to d3ebja_
        complexed with 0n8, mn, so4
      2. 1604657Domain d4e5hb_: 4e5h B: [251678]
        automated match to d3ebja_
        complexed with 0n8, mn, so4
      3. 1604658Domain d4e5hc_: 4e5h C: [251679]
        automated match to d3ebja_
        complexed with 0n8, mn, so4
      4. 1604659Domain d4e5hd_: 4e5h D: [251680]
        automated match to d3ebja_
        complexed with 0n8, mn, so4
    10. Domains for 4e5i:
      1. 1604687Domain d4e5ia_: 4e5i A: [251681]
        automated match to d3ebja_
        complexed with 0n9, mn, so4
      2. 1604688Domain d4e5ib_: 4e5i B: [251682]
        automated match to d3ebja_
        complexed with 0n9, mn, so4
      3. 1604689Domain d4e5ic_: 4e5i C: [251683]
        automated match to d3ebja_
        complexed with 0n9, mn, so4
      4. 1604690Domain d4e5id_: 4e5i D: [251684]
        automated match to d3ebja_
        complexed with 0n9, mn, so4
    11. Domains for 4e5j:
      1. 1604668Domain d4e5ja_: 4e5j A: [251685]
        automated match to d3ebja_
        complexed with 581, mn, so4
      2. 1604669Domain d4e5jb_: 4e5j B: [251686]
        automated match to d3ebja_
        complexed with 581, mn, so4
      3. 1604670Domain d4e5jc_: 4e5j C: [251687]
        automated match to d3ebja_
        complexed with 581, mn, so4
      4. 1604671Domain d4e5jd_: 4e5j D: [251688]
        automated match to d3ebja_
        complexed with 581, mn, so4
    12. Domains for 4e5l:
      1. 1604672Domain d4e5la_: 4e5l A: [251689]
        automated match to d3ebja_
        complexed with dbh, mn, so4
      2. 1604673Domain d4e5lb_: 4e5l B: [251690]
        automated match to d3ebja_
        complexed with dbh, mn, so4
      3. 1604674Domain d4e5lc_: 4e5l C: [251691]
        automated match to d3ebja_
        complexed with dbh, mn, so4
      4. 1604675Domain d4e5ld_: 4e5l D: [251692]
        automated match to d3ebja_
        complexed with dbh, mn, so4
    13. Domains for 4nfz:
      1. 1604684Domain d4nfza_: 4nfz A: [253949]
        automated match to d3ebja_
        complexed with mn
      2. 1604685Domain d4nfzb_: 4nfz B: [253950]
        automated match to d3ebja_
        complexed with mn
      3. 1604686Domain d4nfzc_: 4nfz C: [253951]
        automated match to d3ebja_
        complexed with mn

More info for Protein PA N-terminal domain from c.52.1.34: PA N-terminal domain

Timeline for Protein PA N-terminal domain from c.52.1.34: PA N-terminal domain: