SCOPe 2.08: Family c.52.1.34: PA N-terminal domain

Lineage for Family c.52.1.34: PA N-terminal domain

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.52: Restriction endonuclease-like [52979] (4 superfamilies)
   core: 3 layers, a/b/a; mixed beta-sheet of 5 strands, order 12345; strands 2 &, in some families, 5 are antiparallel to the rest

4. Superfamily c.52.1: Restriction endonuclease-like [52980] (37 families)

5. Family c.52.1.34: PA N-terminal domain [254166] (3 proteins)
   Pfam PF00603; relationship to endonucleases discussed in PubMed 19194458

Proteins:

1. P3 N-terminal domain [419090] (1 species)

   • Species Influenza C virus (strain c/johannesburg/1/1966) [TaxId:100673] [419587] (1 PDB entry)

2. PA N-terminal domain [254375] (8 species)

   1. Species Influenza A virus (a/california/07/2009(h1n1)) [TaxId:641809] [393669] (4 PDB entries)

   2. Species Influenza A virus (a/lima/wrair1695p/2009(h1n1)) [TaxId:985958] [256341] (11 PDB entries)

   3. Species Influenza A virus (strain a/little yellow-shouldered bat/guatemala/060/2010(h17n10)) [TaxId:1129347] [419588] (1 PDB entry)

   4. Species Influenza A virus (strain a/puerto rico/8/1934 h1n1) [TaxId:211044] [272056] (5 PDB entries)

   5. Species Influenza A virus [TaxId:1305075] [280128] (1 PDB entry)

   6. Species Influenza A virus [TaxId:387207] [260115] (1 PDB entry)

   7. Species Influenza A virus [TaxId:93838] [254808] (91 PDB entries)

   8. Species Influenza b virus (b/memphis/13/2003) [TaxId:1601067] [354528] (3 PDB entries)

3. automated matches [254637] (1 species)
   not a true protein

   • Species Influenza A virus, different strains [TaxId:11320] [255640] (2 PDB entries)

More info for Family c.52.1.34: PA N-terminal domain

Timeline for Family c.52.1.34: PA N-terminal domain:

• Family c.52.1.34: PA N-terminal domain first appeared in SCOPe 2.04
  
• Family c.52.1.34: PA N-terminal domain appears in SCOPe 2.07