Lineage for Species: African clawed frog (Xenopus laevis) [TaxId: 8355]

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 1986516Fold a.22: Histone-fold [47112] (1 superfamily)
    core: 3 helices; long middle helix is flanked at each end with shorter ones
  4. 1986517Superfamily a.22.1: Histone-fold [47113] (5 families) (S)
  5. 1986518Family a.22.1.1: Nucleosome core histones [47114] (6 protein domains)
    form octamers composed of two copies of each of the four histones
  6. 1986712Protein Histone H3 [47122] (6 species)
  7. 1986713Species African clawed frog (Xenopus laevis) [TaxId:8355] [47124] (39 PDB entries)

PDB entries in Species: African clawed frog (Xenopus laevis) [TaxId: 8355]:

  1. Domain(s) for 1aoi:
    1. 1986756Domain d1aoia_: 1aoi A: [16462]
      Other proteins in same PDB: d1aoib_, d1aoic_, d1aoid_, d1aoif_, d1aoig_, d1aoih_
      protein/DNA complex; complexed with mn
    2. 1986757Domain d1aoie_: 1aoi E: [16463]
      Other proteins in same PDB: d1aoib_, d1aoic_, d1aoid_, d1aoif_, d1aoig_, d1aoih_
      protein/DNA complex; complexed with mn
  2. Domain(s) for 1f66:
    1. 1986730Domain d1f66a_: 1f66 A: [16460]
      Other proteins in same PDB: d1f66b_, d1f66c_, d1f66d_, d1f66f_, d1f66g_, d1f66h_
      protein/DNA complex; complexed with mn
    2. 1986731Domain d1f66e_: 1f66 E: [16461]
      Other proteins in same PDB: d1f66b_, d1f66c_, d1f66d_, d1f66f_, d1f66g_, d1f66h_
      protein/DNA complex; complexed with mn
  3. Domain(s) for 1kx3:
    1. 1986718Domain d1kx3a_: 1kx3 A: [77577]
      Other proteins in same PDB: d1kx3b_, d1kx3c_, d1kx3d_, d1kx3f_, d1kx3g_, d1kx3h_
      protein/DNA complex; complexed with mn
    2. 1986719Domain d1kx3e_: 1kx3 E: [77581]
      Other proteins in same PDB: d1kx3b_, d1kx3c_, d1kx3d_, d1kx3f_, d1kx3g_, d1kx3h_
      protein/DNA complex; complexed with mn
  4. Domain(s) for 1kx4:
    1. 1986748Domain d1kx4a_: 1kx4 A: [77585]
      Other proteins in same PDB: d1kx4b_, d1kx4c_, d1kx4d_, d1kx4f_, d1kx4g_, d1kx4h_
      protein/DNA complex; complexed with cl, mn
    2. 1986749Domain d1kx4e_: 1kx4 E: [77589]
      Other proteins in same PDB: d1kx4b_, d1kx4c_, d1kx4d_, d1kx4f_, d1kx4g_, d1kx4h_
      protein/DNA complex; complexed with cl, mn
  5. Domain(s) for 1kx5:
    1. 1986714Domain d1kx5a_: 1kx5 A: [77593]
      Other proteins in same PDB: d1kx5b_, d1kx5c_, d1kx5d_, d1kx5f_, d1kx5g_, d1kx5h_
      protein/DNA complex; complexed with cl, mn
    2. 1986715Domain d1kx5e_: 1kx5 E: [77597]
      Other proteins in same PDB: d1kx5b_, d1kx5c_, d1kx5d_, d1kx5f_, d1kx5g_, d1kx5h_
      protein/DNA complex; complexed with cl, mn
  6. Domain(s) for 1m18:
    1. 1986726Domain d1m18a_: 1m18 A: [78371]
      Other proteins in same PDB: d1m18b_, d1m18c_, d1m18d_, d1m18f_, d1m18g_, d1m18h_
      protein/DNA complex; complexed with 1sz, mn
    2. 1986727Domain d1m18e_: 1m18 E: [78375]
      Other proteins in same PDB: d1m18b_, d1m18c_, d1m18d_, d1m18f_, d1m18g_, d1m18h_
      protein/DNA complex; complexed with 1sz, mn
  7. Domain(s) for 1m19:
    1. 1986722Domain d1m19a_: 1m19 A: [78379]
      Other proteins in same PDB: d1m19b_, d1m19c_, d1m19d_, d1m19f_, d1m19g_, d1m19h_
      protein/DNA complex; complexed with imt, mn
    2. 1986723Domain d1m19e_: 1m19 E: [78383]
      Other proteins in same PDB: d1m19b_, d1m19c_, d1m19d_, d1m19f_, d1m19g_, d1m19h_
      protein/DNA complex; complexed with imt, mn
  8. Domain(s) for 1m1a:
    1. 1986744Domain d1m1aa_: 1m1a A: [78387]
      Other proteins in same PDB: d1m1ab_, d1m1ac_, d1m1ad_, d1m1af_, d1m1ag_, d1m1ah_
      protein/DNA complex; complexed with imt, mn
    2. 1986745Domain d1m1ae_: 1m1a E: [78391]
      Other proteins in same PDB: d1m1ab_, d1m1ac_, d1m1ad_, d1m1af_, d1m1ag_, d1m1ah_
      protein/DNA complex; complexed with imt, mn
  9. Domain(s) for 1p34:
    1. 1986742Domain d1p34a_: 1p34 A: [93970]
      Other proteins in same PDB: d1p34b_, d1p34c_, d1p34d_, d1p34f_, d1p34g_, d1p34h_
      protein/DNA complex; mutant
    2. 1986743Domain d1p34e_: 1p34 E: [93974]
      Other proteins in same PDB: d1p34b_, d1p34c_, d1p34d_, d1p34f_, d1p34g_, d1p34h_
      protein/DNA complex; mutant
  10. Domain(s) for 1p3a:
    1. 1986759Domain d1p3aa_: 1p3a A: [93980]
      Other proteins in same PDB: d1p3ab_, d1p3ac_, d1p3ad_, d1p3af_, d1p3ag_, d1p3ah_
      protein/DNA complex; mutant
    2. 1986760Domain d1p3ae_: 1p3a E: [93984]
      Other proteins in same PDB: d1p3ab_, d1p3ac_, d1p3ad_, d1p3af_, d1p3ag_, d1p3ah_
      protein/DNA complex; mutant
  11. Domain(s) for 1p3b:
    1. 1986771Domain d1p3ba_: 1p3b A: [93988]
      Other proteins in same PDB: d1p3bb_, d1p3bc_, d1p3bd_, d1p3bf_, d1p3bg_, d1p3bh_
      protein/DNA complex; mutant
    2. 1986772Domain d1p3be_: 1p3b E: [93992]
      Other proteins in same PDB: d1p3bb_, d1p3bc_, d1p3bd_, d1p3bf_, d1p3bg_, d1p3bh_
      protein/DNA complex; mutant
  12. Domain(s) for 1p3f:
    1. 1986769Domain d1p3fa_: 1p3f A: [93998]
      Other proteins in same PDB: d1p3fb_, d1p3fc_, d1p3fd_, d1p3ff_, d1p3fg_, d1p3fh_
      protein/DNA complex; mutant
    2. 1986770Domain d1p3fe_: 1p3f E: [94002]
      Other proteins in same PDB: d1p3fb_, d1p3fc_, d1p3fd_, d1p3ff_, d1p3fg_, d1p3fh_
      protein/DNA complex; mutant
  13. Domain(s) for 1p3g:
    1. 1986740Domain d1p3ga_: 1p3g A: [94006]
      Other proteins in same PDB: d1p3gb_, d1p3gc_, d1p3gd_, d1p3gf_, d1p3gg_, d1p3gh_
      protein/DNA complex; mutant
    2. 1986741Domain d1p3ge_: 1p3g E: [94010]
      Other proteins in same PDB: d1p3gb_, d1p3gc_, d1p3gd_, d1p3gf_, d1p3gg_, d1p3gh_
      protein/DNA complex; mutant
  14. Domain(s) for 1p3i:
    1. 1986724Domain d1p3ia_: 1p3i A: [94014]
      Other proteins in same PDB: d1p3ib_, d1p3ic_, d1p3id_, d1p3if_, d1p3ig_, d1p3ih_
      protein/DNA complex; mutant
    2. 1986725Domain d1p3ie_: 1p3i E: [94018]
      Other proteins in same PDB: d1p3ib_, d1p3ic_, d1p3id_, d1p3if_, d1p3ig_, d1p3ih_
      protein/DNA complex; mutant
  15. Domain(s) for 1p3k:
    1. 1986754Domain d1p3ka_: 1p3k A: [94024]
      Other proteins in same PDB: d1p3kb_, d1p3kc_, d1p3kd_, d1p3kf_, d1p3kg_, d1p3kh_
      protein/DNA complex; mutant
    2. 1986755Domain d1p3ke_: 1p3k E: [94028]
      Other proteins in same PDB: d1p3kb_, d1p3kc_, d1p3kd_, d1p3kf_, d1p3kg_, d1p3kh_
      protein/DNA complex; mutant
  16. Domain(s) for 1p3l:
    1. 1986728Domain d1p3la_: 1p3l A: [94032]
      Other proteins in same PDB: d1p3lb_, d1p3lc_, d1p3ld_, d1p3lf_, d1p3lg_, d1p3lh_
      protein/DNA complex; mutant
    2. 1986729Domain d1p3le_: 1p3l E: [94036]
      Other proteins in same PDB: d1p3lb_, d1p3lc_, d1p3ld_, d1p3lf_, d1p3lg_, d1p3lh_
      protein/DNA complex; mutant
  17. Domain(s) for 1p3m:
    1. 1986752Domain d1p3ma_: 1p3m A: [94040]
      Other proteins in same PDB: d1p3mb_, d1p3mc_, d1p3md_, d1p3mf_, d1p3mg_, d1p3mh_
      protein/DNA complex; mutant
    2. 1986753Domain d1p3me_: 1p3m E: [94044]
      Other proteins in same PDB: d1p3mb_, d1p3mc_, d1p3md_, d1p3mf_, d1p3mg_, d1p3mh_
      protein/DNA complex; mutant
  18. Domain(s) for 1p3o:
    1. 1986736Domain d1p3oa_: 1p3o A: [94049]
      Other proteins in same PDB: d1p3ob_, d1p3oc_, d1p3od_, d1p3of_, d1p3og_, d1p3oh_
      protein/DNA complex; mutant
    2. 1986737Domain d1p3oe_: 1p3o E: [94053]
      Other proteins in same PDB: d1p3ob_, d1p3oc_, d1p3od_, d1p3of_, d1p3og_, d1p3oh_
      protein/DNA complex; mutant
  19. Domain(s) for 1p3p:
    1. 1986734Domain d1p3pa_: 1p3p A: [94057]
      Other proteins in same PDB: d1p3pb_, d1p3pc_, d1p3pd_, d1p3pf_, d1p3pg_, d1p3ph_
      protein/DNA complex; mutant
    2. 1986735Domain d1p3pe_: 1p3p E: [94061]
      Other proteins in same PDB: d1p3pb_, d1p3pc_, d1p3pd_, d1p3pf_, d1p3pg_, d1p3ph_
      protein/DNA complex; mutant
  20. Domain(s) for 1s32:
    1. 1986716Domain d1s32a_: 1s32 A: [98412]
      Other proteins in same PDB: d1s32b_, d1s32c_, d1s32d_, d1s32f_, d1s32g_, d1s32h_
      protein/DNA complex; complexed with cl, imt, mn, ogg
    2. 1986717Domain d1s32e_: 1s32 E: [98416]
      Other proteins in same PDB: d1s32b_, d1s32c_, d1s32d_, d1s32f_, d1s32g_, d1s32h_
      protein/DNA complex; complexed with cl, imt, mn, ogg
  21. Domain(s) for 1zbb:
    1. 1986791Domain d1zbba1: 1zbb A:39-135 [145985]
      Other proteins in same PDB: d1zbbb1, d1zbbd1, d1zbbf1
      automatically matched to d1p3ie_
      protein/DNA complex
    2. 1986792Domain d1zbbe1: 1zbb E:39-135 [145988]
      Other proteins in same PDB: d1zbbb1, d1zbbd1, d1zbbf1
      automatically matched to d1p3ie_
      protein/DNA complex
  22. Domain(s) for 1zla:
    1. 1986765Domain d1zlaa_: 1zla A: [125240]
      Other proteins in same PDB: d1zlab_, d1zlac1, d1zlad_, d1zlaf_, d1zlag_, d1zlah_
      automated match to d1kx5a_
      protein/DNA complex
    2. 1986766Domain d1zlae_: 1zla E: [125244]
      Other proteins in same PDB: d1zlab_, d1zlac1, d1zlad_, d1zlaf_, d1zlag_, d1zlah_
      automated match to d1kx5a_
      protein/DNA complex
  23. Domain(s) for 2f8n:
    1. 1986767Domain d2f8na_: 2f8n A: [133133]
      Other proteins in same PDB: d2f8nb_, d2f8nd_, d2f8nf_, d2f8ng_, d2f8nh_, d2f8nk1
      automated match to d1kx5a_
      protein/DNA complex
    2. 1986768Domain d2f8ne_: 2f8n E: [133136]
      Other proteins in same PDB: d2f8nb_, d2f8nd_, d2f8nf_, d2f8ng_, d2f8nh_, d2f8nk1
      automated match to d1kx5a_
      protein/DNA complex
  24. Domain(s) for 2fj7:
    1. 1986785Domain d2fj7a1: 2fj7 A:38-135 [133548]
      Other proteins in same PDB: d2fj7b1, d2fj7d1, d2fj7f1, d2fj7h1
      automatically matched to d1p3ie_
      protein/DNA complex
    2. 1986786Domain d2fj7e1: 2fj7 E:38-135 [133551]
      Other proteins in same PDB: d2fj7b1, d2fj7d1, d2fj7f1, d2fj7h1
      automatically matched to d1p3ie_
      protein/DNA complex
  25. Domain(s) for 2io5:
  26. Domain(s) for 2nzd:
    1. 1986746Domain d2nzda_: 2nzd A: [138848]
      Other proteins in same PDB: d2nzdb_, d2nzdc_, d2nzdd_, d2nzdf_, d2nzdg_, d2nzdh_
      automated match to d1kx5a_
      protein/DNA complex; complexed with mn
    2. 1986747Domain d2nzde_: 2nzd E: [138851]
      Other proteins in same PDB: d2nzdb_, d2nzdc_, d2nzdd_, d2nzdf_, d2nzdg_, d2nzdh_
      automated match to d1kx5a_
      protein/DNA complex; complexed with mn
  27. Domain(s) for 3b6f:
    1. 1986787Domain d3b6fa1: 3b6f A:33-135 [154884]
      Other proteins in same PDB: d3b6fb1, d3b6fc1, d3b6fd1, d3b6ff1, d3b6fg1, d3b6fh1
      automatically matched to d1aoie_
      protein/DNA complex; complexed with mn
    2. 1986788Domain d3b6fe1: 3b6f E:33-135 [154888]
      Other proteins in same PDB: d3b6fb1, d3b6fc1, d3b6fd1, d3b6ff1, d3b6fg1, d3b6fh1
      automatically matched to d1aoie_
      protein/DNA complex; complexed with mn
  28. Domain(s) for 3b6g:
    1. 1986789Domain d3b6ga1: 3b6g A:33-135 [154892]
      Other proteins in same PDB: d3b6gb1, d3b6gc1, d3b6gd1, d3b6gf1, d3b6gg1, d3b6gh1
      automatically matched to d1aoie_
      protein/DNA complex; complexed with mn
    2. 1986790Domain d3b6ge1: 3b6g E:33-135 [154896]
      Other proteins in same PDB: d3b6gb1, d3b6gc1, d3b6gd1, d3b6gf1, d3b6gg1, d3b6gh1
      automatically matched to d1aoie_
      protein/DNA complex; complexed with mn
  29. Domain(s) for 3c1b:
    1. 1986720Domain d3c1ba_: 3c1b A: [155851]
      Other proteins in same PDB: d3c1bb_, d3c1bc_, d3c1bd_, d3c1bf_, d3c1bg_, d3c1bh_
      automated match to d1kx5a_
      protein/DNA complex
    2. 1986721Domain d3c1be_: 3c1b E: [155855]
      Other proteins in same PDB: d3c1bb_, d3c1bc_, d3c1bd_, d3c1bf_, d3c1bg_, d3c1bh_
      automated match to d1kx5a_
      protein/DNA complex
  30. Domain(s) for 3kuy:
    1. 1986775Domain d3kuya_: 3kuy A: [179728]
      Other proteins in same PDB: d3kuyb_, d3kuyc_, d3kuyd_, d3kuyf_, d3kuyg_, d3kuyh_
      automated match to d1kx5a_
      protein/DNA complex; complexed with atv, mn
    2. 1986776Domain d3kuye_: 3kuy E: [179730]
      Other proteins in same PDB: d3kuyb_, d3kuyc_, d3kuyd_, d3kuyf_, d3kuyg_, d3kuyh_
      automated match to d1kx5a_
      protein/DNA complex; complexed with atv, mn
  31. Domain(s) for 3lel:
    1. 1986777Domain d3lela_: 3lel A: [180229]
      Other proteins in same PDB: d3lelb_, d3lelc_, d3leld_, d3lelf_, d3lelg_, d3lelh_, d3lell_, d3lelm_, d3leln_, d3lelp_, d3lelq_, d3lelr_
      automated match to d1kx5a_
      protein/DNA complex; complexed with mn
    2. 1986778Domain d3lele_: 3lel E: [180230]
      Other proteins in same PDB: d3lelb_, d3lelc_, d3leld_, d3lelf_, d3lelg_, d3lelh_, d3lell_, d3lelm_, d3leln_, d3lelp_, d3lelq_, d3lelr_
      automated match to d1kx5a_
      protein/DNA complex; complexed with mn
    3. 1986779Domain d3lelk_: 3lel K: [180231]
      Other proteins in same PDB: d3lelb_, d3lelc_, d3leld_, d3lelf_, d3lelg_, d3lelh_, d3lell_, d3lelm_, d3leln_, d3lelp_, d3lelq_, d3lelr_
      automated match to d1kx5a_
      protein/DNA complex; complexed with mn
    4. 1986780Domain d3lelo_: 3lel O: [180232]
      Other proteins in same PDB: d3lelb_, d3lelc_, d3leld_, d3lelf_, d3lelg_, d3lelh_, d3lell_, d3lelm_, d3leln_, d3lelp_, d3lelq_, d3lelr_
      automated match to d1kx5a_
      protein/DNA complex; complexed with mn
  32. Domain(s) for 3lja:
    1. 1986781Domain d3ljaa_: 3lja A: [180318]
      Other proteins in same PDB: d3ljab_, d3ljad_, d3ljaf_, d3ljah_
      automated match to d1kx5a_
      protein/DNA complex; complexed with mn, so4
    2. 1986782Domain d3ljae_: 3lja E: [180319]
      Other proteins in same PDB: d3ljab_, d3ljad_, d3ljaf_, d3ljah_
      automated match to d1kx5a_
      protein/DNA complex; complexed with mn, so4
  33. Domain(s) for 3lz0:
    1. 1986761Domain d3lz0a_: 3lz0 A: [180643]
      Other proteins in same PDB: d3lz0c_, d3lz0g_
      automated match to d1kx5a_
      protein/DNA complex; complexed with cl, mn
    2. 1986762Domain d3lz0e_: 3lz0 E: [180645]
      Other proteins in same PDB: d3lz0c_, d3lz0g_
      automated match to d1kx5a_
      protein/DNA complex; complexed with cl, mn
  34. Domain(s) for 3lz1:
    1. 1986763Domain d3lz1a_: 3lz1 A: [180647]
      Other proteins in same PDB: d3lz1c_, d3lz1g_
      automated match to d1kx5a_
      protein/DNA complex; complexed with cl, mn
    2. 1986764Domain d3lz1e_: 3lz1 E: [180649]
      Other proteins in same PDB: d3lz1c_, d3lz1g_
      automated match to d1kx5a_
      protein/DNA complex; complexed with cl, mn
  35. Domain(s) for 3mgp:
    1. 1986773Domain d3mgpa_: 3mgp A: [181193]
      Other proteins in same PDB: d3mgpb_, d3mgpc_, d3mgpd_, d3mgpf_, d3mgpg_, d3mgph_
      automated match to d1kx5a_
      protein/DNA complex; complexed with cl, co
    2. 1986774Domain d3mgpe_: 3mgp E: [181195]
      Other proteins in same PDB: d3mgpb_, d3mgpc_, d3mgpd_, d3mgpf_, d3mgpg_, d3mgph_
      automated match to d1kx5a_
      protein/DNA complex; complexed with cl, co
  36. Domain(s) for 3mgq:
    1. 1986783Domain d3mgqa_: 3mgq A: [181197]
      Other proteins in same PDB: d3mgqb_, d3mgqc_, d3mgqd_, d3mgqf_, d3mgqg_, d3mgqh_
      automated match to d1kx5a_
      protein/DNA complex; complexed with cl, ni
    2. 1986784Domain d3mgqe_: 3mgq E: [181199]
      Other proteins in same PDB: d3mgqb_, d3mgqc_, d3mgqd_, d3mgqf_, d3mgqg_, d3mgqh_
      automated match to d1kx5a_
      protein/DNA complex; complexed with cl, ni
  37. Domain(s) for 3mgr:
    1. 1986750Domain d3mgra_: 3mgr A: [181201]
      Other proteins in same PDB: d3mgrb_, d3mgrc_, d3mgrd_, d3mgrf_, d3mgrg_, d3mgrh_
      automated match to d1kx5a_
      protein/DNA complex; complexed with cl, mn, rb
    2. 1986751Domain d3mgre_: 3mgr E: [181203]
      Other proteins in same PDB: d3mgrb_, d3mgrc_, d3mgrd_, d3mgrf_, d3mgrg_, d3mgrh_
      automated match to d1kx5a_
      protein/DNA complex; complexed with cl, mn, rb
  38. Domain(s) for 3mnn:
    1. 1986738Domain d3mnna_: 3mnn A: [181451]
      Other proteins in same PDB: d3mnnb_, d3mnnc_, d3mnnd_, d3mnnf_, d3mnng_, d3mnnh_
      automated match to d1kx5a_
      protein/DNA complex; complexed with mg, mml, ptw, ru, so4
    2. 1986739Domain d3mnne_: 3mnn E: [181453]
      Other proteins in same PDB: d3mnnb_, d3mnnc_, d3mnnd_, d3mnnf_, d3mnng_, d3mnnh_
      automated match to d1kx5a_
      protein/DNA complex; complexed with mg, mml, ptw, ru, so4
  39. Domain(s) for 3mvd:
    1. 1986732Domain d3mvda_: 3mvd A: [181592]
      Other proteins in same PDB: d3mvdb_, d3mvdc_, d3mvdd_, d3mvdf_, d3mvdg_, d3mvdh_
      automated match to d1kx5a_
      protein/DNA complex
    2. 1986733Domain d3mvde_: 3mvd E: [181593]
      Other proteins in same PDB: d3mvdb_, d3mvdc_, d3mvdd_, d3mvdf_, d3mvdg_, d3mvdh_
      automated match to d1kx5a_
      protein/DNA complex

More info for Species African clawed frog (Xenopus laevis) [TaxId:8355] from a.22.1.1 Histone H3

Timeline for Species African clawed frog (Xenopus laevis) [TaxId:8355] from a.22.1.1 Histone H3: