PDB entry 3mvd
View 3mvd on RCSB PDB site
Description: Crystal structure of the chromatin factor RCC1 in complex with the nucleosome core particle
Class: signaling protein/structural protein/DNA
Keywords: PROTEIN-DNA COMPLEX, NUCLEOSOME CORE PARTICLE (NCP), NCP-chromatin factor complex, 7-bladed beta-propeller, SIGNALING PROTEIN-STRUCTURAL PROTEIN-DNA complex
Deposited on
2010-05-04, released
2010-08-25
The last revision prior to the SCOPe 2.08 freeze date was dated
2010-10-13, with a file datestamp of
2010-10-08.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: 0.176
AEROSPACI score: 0.31
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Histone H3.2
Species: Xenopus laevis [TaxId:8355]
Gene: HISTONE H3
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3mvda_ - Chain 'B':
Compound: histone h4
Species: Xenopus laevis [TaxId:8355]
Gene: HISTONE H4
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3mvdb_ - Chain 'C':
Compound: histone h2a
Species: Xenopus laevis [TaxId:8355]
Gene: LOC494591
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3mvdc_ - Chain 'D':
Compound: Histone H2B 1.1
Species: Xenopus laevis [TaxId:8355]
Gene: HISTONE H2B
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3mvdd_ - Chain 'E':
Compound: Histone H3.2
Species: Xenopus laevis [TaxId:8355]
Gene: HISTONE H3
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3mvde_ - Chain 'F':
Compound: histone h4
Species: Xenopus laevis [TaxId:8355]
Gene: HISTONE H4
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3mvdf_ - Chain 'G':
Compound: histone h2a
Species: Xenopus laevis [TaxId:8355]
Gene: LOC494591
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3mvdg_ - Chain 'H':
Compound: Histone H2B 1.1
Species: Xenopus laevis [TaxId:8355]
Gene: HISTONE H2B
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3mvdh_ - Chain 'I':
Compound: DNA (146-mer)
- Chain 'J':
Compound: DNA (146-mer)
- Chain 'K':
Compound: Regulator of chromosome condensation
Species: Drosophila melanogaster [TaxId:7227]
Gene: Bj1, CG10480, RCC1 (Bj1)
Database cross-references and differences (RAF-indexed):
- Chain 'L':
Compound: Regulator of chromosome condensation
Species: Drosophila melanogaster [TaxId:7227]
Gene: Bj1, CG10480, RCC1 (Bj1)
Database cross-references and differences (RAF-indexed):
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3mvdA (A:)
artkqtarkstggkaprkqlatkaarksapatggvkkphryrpgtvalreirryqkstel
lirklpfqrlvreiaqdfktdlrfqssavmalqeaseaylvalfedtnlcaihakrvtim
pkdiqlarrirgera
Sequence, based on observed residues (ATOM records): (download)
>3mvdA (A:)
kphryrpgtvalreirryqkstellirklpfqrlvreiaqdfktdlrfqssavmalqeas
eaylvalfedtnlcaihakrvtimpkdiqlarrirger
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3mvdB (B:)
sgrgkggkglgkggakrhrkvlrdniqgitkpairrlarrggvkrisgliyeetrgvlkv
flenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg
Sequence, based on observed residues (ATOM records): (download)
>3mvdB (B:)
kvlrdniqgitkpairrlarrggvkrisgliyeetrgvlkvflenvirdavtytehakrk
tvtamdvvyalkrqgrtlygfg
- Chain 'C':
Sequence, based on SEQRES records: (download)
>3mvdC (C:)
sgrgkqggktrakaktrssraglqfpvgrvhrllrkgnyaervgagapvylaavleylta
eilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkkt
essksaksk
Sequence, based on observed residues (ATOM records): (download)
>3mvdC (C:)
akaktrssraglqfpvgrvhrllrkgnyaervgagapvylaavleyltaeilelagnaar
dnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpk
- Chain 'D':
Sequence, based on SEQRES records: (download)
>3mvdD (D:)
aksapapkkgskkavtktqkkdgkkrrktrkesyaiyvykvlkqvhpdtgisskamsimn
sfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkyts
ak
Sequence, based on observed residues (ATOM records): (download)
>3mvdD (D:)
trkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstits
reiqtavrlllpgelakhavsegtkavtkytsa
- Chain 'E':
Sequence, based on SEQRES records: (download)
>3mvdE (E:)
artkqtarkstggkaprkqlatkaarksapatggvkkphryrpgtvalreirryqkstel
lirklpfqrlvreiaqdfktdlrfqssavmalqeaseaylvalfedtnlcaihakrvtim
pkdiqlarrirgera
Sequence, based on observed residues (ATOM records): (download)
>3mvdE (E:)
ryrpgtvalreirryqkstellirklpfqrlvreiaqdfktdlrfqssavmalqeaseay
lvalfedtnlcaihakrvtimpkdiqlarrirger
- Chain 'F':
Sequence, based on SEQRES records: (download)
>3mvdF (F:)
sgrgkggkglgkggakrhrkvlrdniqgitkpairrlarrggvkrisgliyeetrgvlkv
flenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg
Sequence, based on observed residues (ATOM records): (download)
>3mvdF (F:)
rhrkvlrdniqgitkpairrlarrggvkrisgliyeetrgvlkvflenvirdavtyteha
krktvtamdvvyalkrqgrtlygfgg
- Chain 'G':
Sequence, based on SEQRES records: (download)
>3mvdG (G:)
sgrgkqggktrakaktrssraglqfpvgrvhrllrkgnyaervgagapvylaavleylta
eilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkkt
essksaksk
Sequence, based on observed residues (ATOM records): (download)
>3mvdG (G:)
akaktrssraglqfpvgrvhrllrkgnyaervgagapvylaavleyltaeilelagnaar
dnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpk
- Chain 'H':
Sequence, based on SEQRES records: (download)
>3mvdH (H:)
aksapapkkgskkavtktqkkdgkkrrktrkesyaiyvykvlkqvhpdtgisskamsimn
sfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkyts
ak
Sequence, based on observed residues (ATOM records): (download)
>3mvdH (H:)
trkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstits
reiqtavrlllpgelakhavsegtkavtkytsa
- Chain 'I':
No sequence available.
- Chain 'J':
No sequence available.
- Chain 'K':
No sequence available.
- Chain 'L':
No sequence available.