PDB entry 1kx5
View 1kx5 on RCSB PDB site
Description: X-Ray Structure of the Nucleosome Core Particle, NCP147, at 1.9 A Resolution
Class: structural protein/DNA
Keywords: nucleosome, chromatin, histone, protein-DNA interaction, nucleoprotein, supercoiled DNA, nucleosome core, protein-DNA complex, DNA bending, DNA curvature, DNA-cation binding, DNA-metal binding, DNA solvation, structural protein/DNA complex
Deposited on
2002-01-31, released
2002-12-25
The last revision prior to the SCOPe 2.08 freeze date was dated
2009-02-24, with a file datestamp of
2009-03-01.
Experiment type: XRAY
Resolution: 1.94 Å
R-factor: 0.208
AEROSPACI score: 0.44
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: histone h3
Species: Xenopus laevis [TaxId:8355]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1kx5a_ - Chain 'B':
Compound: histone h4
Species: Xenopus laevis [TaxId:8355]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1kx5b_ - Chain 'C':
Compound: histone h2a.1
Species: Xenopus laevis [TaxId:8355]
Database cross-references and differences (RAF-indexed):
- Uniprot P06897 (0-127)
- variant (98)
- conflict (122)
Domains in SCOPe 2.08: d1kx5c_ - Chain 'D':
Compound: histone h2b.2
Species: Xenopus laevis [TaxId:8355]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1kx5d_ - Chain 'E':
Compound: histone h3
Species: Xenopus laevis [TaxId:8355]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1kx5e_ - Chain 'F':
Compound: histone h4
Species: Xenopus laevis [TaxId:8355]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1kx5f_ - Chain 'G':
Compound: histone h2a.1
Species: Xenopus laevis [TaxId:8355]
Database cross-references and differences (RAF-indexed):
- Uniprot P06897 (0-127)
- variant (98)
- conflict (122)
Domains in SCOPe 2.08: d1kx5g_ - Chain 'H':
Compound: histone h2b.2
Species: Xenopus laevis [TaxId:8355]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1kx5h_ - Chain 'I':
Compound: DNA (5'(atcaatatccacctgcagatactaccaaaagtgtatttggaaactgctccatcaaaaggcatgttcagctggaatccagctgaacatgccttttgatggagcagtttccaaatacacttttggtagtatctgcaggtggatattgat)3')
Species: Homo sapiens [TaxId:9606]
- Chain 'J':
Compound: DNA (5'(atcaatatccacctgcagatactaccaaaagtgtatttggaaactgctccatcaaaaggcatgttcagctggattccagctgaacatgccttttgatggagcagtttccaaatacacttttggtagtatctgcaggtggatattgat)3')
Species: Homo sapiens [TaxId:9606]
- Heterogens: MN, CL, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>1kx5A (A:)
artkqtarkstggkaprkqlatkaarksapatggvkkphryrpgtvalreirryqkstel
lirklpfqrlvreiaqdfktdlrfqssavmalqeaseaylvalfedtnlcaihakrvtim
pkdiqlarrirgera
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>1kx5B (B:)
sgrgkggkglgkggakrhrkvlrdniqgitkpairrlarrggvkrisgliyeetrgvlkv
flenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>1kx5C (C:)
sgrgkqggktrakaktrssraglqfpvgrvhrllrkgnyaervgagapvylaavleylta
eilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkkt
essksksk
- Chain 'D':
Sequence, based on SEQRES records: (download)
>1kx5D (D:)
pepaksapapkkgskkavtktqkkdgkkrrktrkesyaiyvykvlkqvhpdtgisskams
imnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtk
ytsak
Sequence, based on observed residues (ATOM records): (download)
>1kx5D (D:)
aksapapkkgskkavtktqkkdgkkrrktrkesyaiyvykvlkqvhpdtgisskamsimn
sfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkyts
ak
- Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)
>1kx5E (E:)
artkqtarkstggkaprkqlatkaarksapatggvkkphryrpgtvalreirryqkstel
lirklpfqrlvreiaqdfktdlrfqssavmalqeaseaylvalfedtnlcaihakrvtim
pkdiqlarrirgera
- Chain 'F':
Sequence; same for both SEQRES and ATOM records: (download)
>1kx5F (F:)
sgrgkggkglgkggakrhrkvlrdniqgitkpairrlarrggvkrisgliyeetrgvlkv
flenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg
- Chain 'G':
Sequence; same for both SEQRES and ATOM records: (download)
>1kx5G (G:)
sgrgkqggktrakaktrssraglqfpvgrvhrllrkgnyaervgagapvylaavleylta
eilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkkt
essksksk
- Chain 'H':
Sequence, based on SEQRES records: (download)
>1kx5H (H:)
pepaksapapkkgskkavtktqkkdgkkrrktrkesyaiyvykvlkqvhpdtgisskams
imnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtk
ytsak
Sequence, based on observed residues (ATOM records): (download)
>1kx5H (H:)
aksapapkkgskkavtktqkkdgkkrrktrkesyaiyvykvlkqvhpdtgisskamsimn
sfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkyts
ak
- Chain 'I':
No sequence available.
- Chain 'J':
No sequence available.