PDB entry 1p3l

View 1p3l on RCSB PDB site
Description: Crystallographic Studies of Nucleosome Core Particles containing Histone 'Sin' Mutants
Class: structural protein/DNA
Keywords: Sin mutants,Nucleosome Core Particle, chromatin, protein/DNA interaction, STRUCTURAL PROTEIN/DNA COMPLEX
Deposited on 2003-04-17, released 2004-02-24
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-19.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.235
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: histone h3
    Species: Xenopus laevis [TaxId:8355]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7ZT64
      • conflict (101)
      • conflict (117)
    Domains in SCOPe 2.08: d1p3la_
  • Chain 'B':
    Compound: histone h4
    Species: Xenopus laevis [TaxId:8355]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1p3lb_
  • Chain 'C':
    Compound: histone h2a
    Species: Xenopus laevis [TaxId:8355]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7ZT66
      • conflict (66-73)
      • conflict (75-87)
    Domains in SCOPe 2.08: d1p3lc_
  • Chain 'D':
    Compound: histone h2b
    Species: Xenopus laevis [TaxId:8355]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P02281
      • conflict (44)
      • conflict (59)
      • conflict (68)
    Domains in SCOPe 2.08: d1p3ld_
  • Chain 'E':
    Compound: histone h3
    Species: Xenopus laevis [TaxId:8355]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7ZT64 (Start-134)
      • conflict (101)
      • conflict (117)
    Domains in SCOPe 2.08: d1p3le_
  • Chain 'F':
    Compound: histone h4
    Species: Xenopus laevis [TaxId:8355]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1p3lf_
  • Chain 'G':
    Compound: histone h2a
    Species: Xenopus laevis [TaxId:8355]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7ZT66
      • conflict (13)
      • conflict (66-73)
      • conflict (75-87)
    Domains in SCOPe 2.08: d1p3lg_
  • Chain 'H':
    Compound: histone h2b
    Species: Xenopus laevis [TaxId:8355]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P02281 (Start-124)
      • conflict (44)
      • conflict (59)
      • conflict (68)
    Domains in SCOPe 2.08: d1p3lh_
  • Chain 'I':
    Compound: Palindromic 146bp Human Alpha-Satellite DNA fragment
    Species: Homo sapiens [TaxId:9606]
  • Chain 'J':
    Compound: Palindromic 146bp Human Alpha-Satellite DNA fragment
    Species: Homo sapiens [TaxId:9606]
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1p3lA (A:)
artkqtarkstggkaprkqlatkaarksapatgeskkphryrpgtvalreirryqkstel
lirklpfqrlvreiaqdfktdlrfqssavmalqeaseaylvalfedtnlcaihakrvhim
pkdiqlarrirgera

    Sequence, based on observed residues (ATOM records): (download) 
    >1p3lA (A:)
phryrpgtvalreirryqkstellirklpfqrlvreiaqdfktdlrfqssavmalqease
aylvalfedtnlcaihakrvhimpkdiqlarrirgera

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1p3lB (B:)
sgrgkggkglgkggakrhrkvlrdniqgitkpairrlarrggvkrisgliyeetrgvlkv
flenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg

    Sequence, based on observed residues (ATOM records): (download) 
    >1p3lB (B:)
dniqgitkpairrlarrggvkrisgliyeetrgvlkvflenvirdavtytehakrktvta
mdvvyalkrqgrtlygfgg

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1p3lC (C:)
sgrgkqggktrakaktrssraglqfpvgrvhrllrkgnyaervgagapvylaavleylta
eilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkkt
esaksaksk

    Sequence, based on observed residues (ATOM records): (download) 
    >1p3lC (C:)
ktrssraglqfpvgrvhrllrkgnyaervgagapvylaavleyltaeilelagnaardnk
ktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkkt

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1p3lD (D:)
pepaksapapkkgskkavtktqkkdgkkrrksrkesyaiyvykvlkqvhpdtgisskams
imnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtk
ytsak

    Sequence, based on observed residues (ATOM records): (download) 
    >1p3lD (D:)
kesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstitsre
iqtavrlllpgelakhavsegtkavtkytsak

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1p3lE (E:)
artkqtarkstggkaprkqlatkaarksapatgeskkphryrpgtvalreirryqkstel
lirklpfqrlvreiaqdfktdlrfqssavmalqeaseaylvalfedtnlcaihakrvhim
pkdiqlarrirgera

    Sequence, based on observed residues (ATOM records): (download) 
    >1p3lE (E:)
kphryrpgtvalreirryqkstellirklpfqrlvreiaqdfktdlrfqssavmalqeas
eaylvalfedtnlcaihakrvhimpkdiqlarrirgera

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1p3lF (F:)
sgrgkggkglgkggakrhrkvlrdniqgitkpairrlarrggvkrisgliyeetrgvlkv
flenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg

    Sequence, based on observed residues (ATOM records): (download) 
    >1p3lF (F:)
kvlrdniqgitkpairrlarrggvkrisgliyeetrgvlkvflenvirdavtytehakrk
tvtamdvvyalkrqgrtlygfgg

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >1p3lG (G:)
sgrgkqggktrakaktrssraglqfpvgrvhrllrkgnyaervgagapvylaavleylta
eilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkkt
esaksaksk

    Sequence, based on observed residues (ATOM records): (download) 
    >1p3lG (G:)
rakaktrssraglqfpvgrvhrllrkgnyaervgagapvylaavleyltaeilelagnaa
rdnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkk

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >1p3lH (H:)
pepaksapapkkgskkavtktqkkdgkkrrksrkesyaiyvykvlkqvhpdtgisskams
imnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtk
ytsak

    Sequence, based on observed residues (ATOM records): (download) 
    >1p3lH (H:)
ksrkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstit
sreiqtavrlllpgelakhavsegtkavtkytsak

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    No sequence available.