Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2446887Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
    3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
  4. 2446888Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (26 families) (S)
    division into families based on beta-sheet topologies
  5. 2449617Family c.37.1.10: Nitrogenase iron protein-like [52652] (16 protein domains)
    core: parallel beta-sheet of 7 strands; order 3241567
  6. 2449909Protein automated matches [190304] (13 species)
    not a true protein

Species:

  1. 2449910Azotobacter vinelandii [TaxId:354] [269127] (1 PDB entry)
  2. 2449915Escherichia coli K-12 [TaxId:83333] [229053] (2 PDB entries)
    1. Domain for 2yhs:
    2. Domains for 4c7o:
      1. 2449917Domain d4c7ob2: 4c7o B:91-300 [229056]
        Other proteins in same PDB: d4c7ob1, d4c7od1, d4c7od3
        automated match to d2qy9a2
        protein/RNA complex; complexed with alf, gdp, mg
      2. 2449918Domain d4c7od2: 4c7o D:91-302 [229054]
        Other proteins in same PDB: d4c7ob1, d4c7od1, d4c7od3
        automated match to d2qy9a2
        protein/RNA complex; complexed with alf, gdp, mg
  3. 2449919Escherichia coli [TaxId:562] [187113] (2 PDB entries)
    1. Domain for 2gcq:
    2. Domains for 6dlx:
      1. 3056474Domain d6dlxa2: 6dlx A:285-494 [356536]
        Other proteins in same PDB: d6dlxa1, d6dlxa3, d6dlxb1, d6dlxb3
        automated match to d2qy9a2
        complexed with gxy, nh4, peg
      2. 3056596Domain d6dlxb2: 6dlx B:285-494 [356658]
        Other proteins in same PDB: d6dlxa1, d6dlxa3, d6dlxb1, d6dlxb3
        automated match to d2qy9a2
        complexed with gxy, nh4, peg
  4. 2449921Human (Homo sapiens) [TaxId:9606] [189076] (3 PDB entries)
    1. Domains for 2c5m:
      1. 2449925Domain d2c5ma_: 2c5m A: [303636]
        automated match to d2vo1b_
        complexed with so4
      2. 2449926Domain d2c5mb_: 2c5m B: [303637]
        automated match to d2vo1b_
        complexed with so4
      3. 2449927Domain d2c5mc_: 2c5m C: [303638]
        automated match to d2vo1b_
        complexed with so4
      4. 2449928Domain d2c5md_: 2c5m D: [303639]
        automated match to d2vo1b_
        complexed with so4
    2. Domain for 2v40:
    3. Domains for 3ihl:
      1. 2449923Domain d3ihla_: 3ihl A: [178321]
        automated match to d2vo1a1
        complexed with adp, po4
      2. 2449924Domain d3ihlb_: 3ihl B: [178322]
        automated match to d2vo1a1
        complexed with adp, po4
  5. 2449929Moorella thermoacetica [TaxId:1525] [189834] (6 PDB entries)
    1. Domain for 4ioj:
    2. Domains for 4iom:
      1. 2449933Domain d4ioma_: 4iom A: [252668]
        automated match to d4iojb_
        complexed with fol, so4, toe
      2. 2449934Domain d4iomb_: 4iom B: [252669]
        automated match to d4iojb_
        complexed with fol, so4, toe
    3. Domains for 4jim:
      1. 2449931Domain d4jima_: 4jim A: [223840]
        complexed with so4, toe
      2. 2449932Domain d4jimb_: 4jim B: [223841]
        complexed with so4, toe
    4. Domains for 4jjk:
      1. 2449939Domain d4jjka_: 4jjk A: [252950]
        automated match to d4iojb_
        complexed with edo, fol, so4, toe
      2. 2449940Domain d4jjkb_: 4jjk B: [252951]
        automated match to d4iojb_
        complexed with edo, fol, so4, toe
    5. Domains for 4jjz:
      1. 2449935Domain d4jjza_: 4jjz A: [223850]
        complexed with 1pe, adp, mg, so4, toe, xpo
      2. 2449936Domain d4jjzb_: 4jjz B: [223851]
        complexed with 1pe, adp, mg, so4, toe, xpo
    6. Domains for 4jki:
      1. 2449937Domain d4jkia_: 4jki A: [223874]
        complexed with adp, so4, xpo, zd9
      2. 2449938Domain d4jkib_: 4jki B: [223875]
        complexed with adp, so4, xpo, zd9
  6. 2449941Moorella thermoacetica [TaxId:264732] [196795] (3 PDB entries)
    1. Domain for 4ioj:
    2. Domains for 4iok:
      1. 2449943Domain d4ioka_: 4iok A: [223284]
        automated match to d4ioja_
        complexed with adp, mg, so4, toe, xpo
      2. 2449944Domain d4iokb_: 4iok B: [223285]
        automated match to d4ioja_
        complexed with adp, mg, so4, toe, xpo
    3. Domains for 4iol:
      1. 2449945Domain d4iola_: 4iol A: [223286]
        automated match to d4ioja_
        complexed with adp, so4, xpo, zd9
      2. 2449946Domain d4iolb_: 4iol B: [223287]
        automated match to d4ioja_
        complexed with adp, so4, xpo, zd9
  7. 2449947Sulfolobus solfataricus [TaxId:2287] [318298] (1 PDB entry)
  8. 2449950Sulfolobus solfataricus [TaxId:273057] [318285] (1 PDB entry)
  9. 2449955Tepidanaerobacter acetatoxydans [TaxId:1209989] [319241] (2 PDB entries)
    1. Domains for 5a4j:
      1. 2449956Domain d5a4ja_: 5a4j A: [319287]
        automated match to d4iojb_
        complexed with act, edo, gol, k, peg, tar
      2. 2449957Domain d5a4jb_: 5a4j B: [319242]
        automated match to d4iojb_
        complexed with act, edo, gol, k, peg, tar
      3. 2449958Domain d5a4jc_: 5a4j C: [319449]
        automated match to d4iojb_
        complexed with act, edo, gol, k, peg, tar
      4. 2449959Domain d5a4jd_: 5a4j D: [319243]
        automated match to d4iojb_
        complexed with act, edo, gol, k, peg, tar
    2. Domains for 5a5g:
      1. 2449960Domain d5a5ga_: 5a5g A: [319273]
        automated match to d4iojb_
        complexed with gol, k, peg
      2. 2449961Domain d5a5gb_: 5a5g B: [319445]
        automated match to d4iojb_
        complexed with gol, k, peg
  10. 2449962Thermus aquaticus [TaxId:271] [255076] (4 PDB entries)
    1. Domains for 2c03:
      1. 2449963Domain d2c03a2: 2c03 A:89-295 [129567]
        Other proteins in same PDB: d2c03a1, d2c03b1
        automated match to d2ffha3
        protein/RNA complex; complexed with dio, edo, gdp
      2. 2449964Domain d2c03b2: 2c03 B:89-297 [129569]
        Other proteins in same PDB: d2c03a1, d2c03b1
        automated match to d2ffha3
        protein/RNA complex; complexed with dio, edo, gdp
    2. Domains for 2cnw:
      1. 2449968Domain d2cnwd2: 2cnw D:93-303 [130656]
        Other proteins in same PDB: d2cnwa1, d2cnwa2, d2cnwb1, d2cnwb2, d2cnwc1, d2cnwc2, d2cnwd1, d2cnwe1, d2cnwe2, d2cnwf1
        automated match to d1okkd2
        protein/RNA complex; complexed with 5gp, alf, gdp, mg
      2. 2449969Domain d2cnwf2: 2cnw F:97-303 [130660]
        Other proteins in same PDB: d2cnwa1, d2cnwa2, d2cnwb1, d2cnwb2, d2cnwc1, d2cnwc2, d2cnwd1, d2cnwe1, d2cnwe2, d2cnwf1
        automated match to d1okkd2
        protein/RNA complex; complexed with 5gp, alf, gdp, mg
    3. Domain for 2iyl:
    4. Domains for 2j7p:
      1. 2449965Domain d2j7pd2: 2j7p D:97-303 [138124]
        Other proteins in same PDB: d2j7pa1, d2j7pa2, d2j7pb1, d2j7pb2, d2j7pd1, d2j7pe1
        automated match to d1okkd2
        protein/RNA complex; complexed with edo, gnp, iod, k, mg
      2. 2449966Domain d2j7pe2: 2j7p E:97-303 [138126]
        Other proteins in same PDB: d2j7pa1, d2j7pa2, d2j7pb1, d2j7pb2, d2j7pd1, d2j7pe1
        automated match to d1okkd2
        protein/RNA complex; complexed with edo, gnp, iod, k, mg
  11. 2449970Yersinia pestis [TaxId:214092] [188914] (1 PDB entry)
  12. 3049735Legionella pneumophila [TaxId:446] [349797] (2 PDB entries)
    1. Domain for 6bs7:
    2. Domain for 6c25:
  13. 3056291Escherichia coli [TaxId:83333] [356353] (3 PDB entries)
    1. Domains for 6cqp:
      1. 3056292Domain d6cqpa2: 6cqp A:285-497 [356354]
        Other proteins in same PDB: d6cqpa1, d6cqpa3, d6cqpb1, d6cqpb3
        automated match to d2qy9a2
        complexed with gol, na
      2. 3056350Domain d6cqpb2: 6cqp B:285-495 [356412]
        Other proteins in same PDB: d6cqpa1, d6cqpa3, d6cqpb1, d6cqpb3
        automated match to d2qy9a2
        complexed with gol, na
    2. Domains for 6cs8:
      1. 3056298Domain d6cs8a2: 6cs8 A:285-495 [356360]
        Other proteins in same PDB: d6cs8a1, d6cs8a3, d6cs8b1, d6cs8b3
        automated match to d2qy9a2
        complexed with f9y, na
      2. 3056322Domain d6cs8b2: 6cs8 B:285-497 [356384]
        Other proteins in same PDB: d6cs8a1, d6cs8a3, d6cs8b1, d6cs8b3
        automated match to d2qy9a2
        complexed with f9y, na
    3. Domains for 6cvd:
      1. 3056371Domain d6cvdb2: 6cvd B:285-497 [356433]
        Other proteins in same PDB: d6cvda1, d6cvda3, d6cvdb1, d6cvdb3
        automated match to d2qy9a2
        complexed with 4me, na, nh4
      2. 3056379Domain d6cvda2: 6cvd A:285-496 [356441]
        Other proteins in same PDB: d6cvda1, d6cvda3, d6cvdb1, d6cvdb3
        automated match to d2qy9a2
        complexed with 4me, na, nh4

More info for Protein automated matches from c.37.1.10: Nitrogenase iron protein-like

Timeline for Protein automated matches from c.37.1.10: Nitrogenase iron protein-like: