Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2483347Fold c.87: UDP-Glycosyltransferase/glycogen phosphorylase [53755] (1 superfamily)
    consists of two non-similar domains with 3 layers (a/b/a) each
    domain 1: parallel beta-sheet of 7 strands, order 3214567
    domain 2: parallel beta-sheet of 6 strands, order 321456
  4. 2483348Superfamily c.87.1: UDP-Glycosyltransferase/glycogen phosphorylase [53756] (14 families) (S)
  5. 2483853Family c.87.1.0: automated matches [191559] (1 protein)
    not a true family
  6. 2483854Protein automated matches [190965] (28 species)
    not a true protein

Species:

  1. 2483855Anthrax bacillus (Bacillus anthracis) [TaxId:1392] [225410] (1 PDB entry)
  2. 2483858Burkholderia multivorans [TaxId:395019] [329878] (1 PDB entry)
  3. 2483861Burkholderia vietnamiensis [TaxId:269482] [326316] (1 PDB entry)
  4. 2483870Burkholderia xenovorans [TaxId:266265] [315156] (2 PDB entries)
    1. Domain for 5hxa:
    2. Domains for 5v0t:
      1. 2483871Domain d5v0ta_: 5v0t A: [332813]
        automated match to d5hxaa_
        complexed with act, edo, fmt, g6p, oxd, tar, udp
      2. 2483872Domain d5v0tb_: 5v0t B: [332788]
        automated match to d5hxaa_
        complexed with act, edo, fmt, g6p, oxd, tar, udp
      3. 2483873Domain d5v0tc_: 5v0t C: [332822]
        automated match to d5hxaa_
        complexed with act, edo, fmt, g6p, oxd, tar, udp
      4. 2483874Domain d5v0td_: 5v0t D: [332854]
        automated match to d5hxaa_
        complexed with act, edo, fmt, g6p, oxd, tar, udp
      5. 2483875Domain d5v0te_: 5v0t E: [332872]
        automated match to d5hxaa_
        complexed with act, edo, fmt, g6p, oxd, tar, udp
      6. 2483876Domain d5v0tf_: 5v0t F: [332771]
        automated match to d5hxaa_
        complexed with act, edo, fmt, g6p, oxd, tar, udp
      7. 2483877Domain d5v0tg_: 5v0t G: [332812]
        automated match to d5hxaa_
        complexed with act, edo, fmt, g6p, oxd, tar, udp
      8. 2483878Domain d5v0th_: 5v0t H: [332828]
        automated match to d5hxaa_
        complexed with act, edo, fmt, g6p, oxd, tar, udp
  5. 2483880Candida albicans [TaxId:237561] [333712] (4 PDB entries)
    1. Domains for 5hut:
      1. 2483883Domain d5huta_: 5hut A: [333713]
        automated match to d2wtxb_
        complexed with so4, upg
      2. 2483884Domain d5hutb_: 5hut B: [333843]
        automated match to d2wtxb_
        complexed with so4, upg
    2. Domains for 5huu:
      1. 2483887Domain d5huua_: 5huu A: [333814]
        automated match to d2wtxb_
        complexed with g6p, udp
      2. 2483888Domain d5huub_: 5huu B: [333715]
        automated match to d2wtxb_
        complexed with g6p, udp
    3. Domains for 5huv:
      1. 2483885Domain d5huva_: 5huv A: [333762]
        automated match to d2wtxb_
        complexed with upg
      2. 2483886Domain d5huvb_: 5huv B: [333714]
        automated match to d2wtxb_
        complexed with upg
    4. Domains for 5hvl:
      1. 2483881Domain d5hvla_: 5hvl A: [334079]
        automated match to d2wtxb_
        complexed with so4, udp, vdm
      2. 2483882Domain d5hvlb_: 5hvl B: [333889]
        automated match to d2wtxb_
        complexed with so4, udp, vdm
  6. 2483889Clitoria ternatea [TaxId:43366] [228739] (5 PDB entries)
    1. Domain for 3wc4:
    2. Domain for 4rel:
    3. Domain for 4rem:
    4. Domain for 4ren:
    5. Domain for 4whm:
  7. 2483895Corynebacterium glutamicum [TaxId:1718] [195114] (3 PDB entries)
    1. Domains for 3c48:
      1. 2483896Domain d3c48a1: 3c48 A:1-418 [199159]
        Other proteins in same PDB: d3c48a2
        automated match to d3c48b_
        complexed with so4
      2. 2483897Domain d3c48b_: 3c48 B: [195115]
        Other proteins in same PDB: d3c48a2
        automated match to d2bisb_
        complexed with so4
    2. Domains for 3c4q:
      1. 2483900Domain d3c4qa_: 3c4q A: [208784]
        automated match to d3c48b_
        complexed with mg, so4, udp
      2. 2483901Domain d3c4qb_: 3c4q B: [208785]
        automated match to d3c48b_
        complexed with mg, so4, udp
    3. Domains for 3c4v:
      1. 2483898Domain d3c4va_: 3c4v A: [208786]
        automated match to d3c48b_
        complexed with lip, mg, udp
      2. 2483899Domain d3c4vb_: 3c4v B: [208787]
        automated match to d3c48b_
        complexed with lip, mg, udp
  8. 2483902Escherichia coli K-12 [TaxId:83333] [188877] (1 PDB entry)
  9. 2483904Escherichia coli [TaxId:562] [188591] (6 PDB entries)
    1. Domain for 2qzs:
    2. Domain for 2r4t:
    3. Domain for 2r4u:
    4. Domain for 3cop:
    5. Domain for 3cx4:
    6. Domain for 3d1j:
  10. 2483911Human (Homo sapiens) [TaxId:9606] [318032] (1 PDB entry)
  11. 2483916Medicago truncatula [TaxId:3880] [188985] (2 PDB entries)
    1. Domain for 3hbf:
    2. Domain for 3hbj:
  12. 2483919Methanocaldococcus jannaschii [TaxId:243232] [257139] (2 PDB entries)
    1. Domain for 4neq:
    2. Domain for 4nes:
  13. 2483922Micromonospora echinospora [TaxId:1877] [311324] (2 PDB entries)
    1. Domain for 3otg:
    2. Domains for 3oth:
      1. 2483924Domain d3otha1: 3oth A:1-388 [306172]
        Other proteins in same PDB: d3otha2
        automated match to d2p6pa_
        complexed with clj, tyd
      2. 2483925Domain d3othb_: 3oth B: [306174]
        Other proteins in same PDB: d3otha2
        automated match to d2p6pa_
        complexed with clj, tyd
  14. 2483926Mycobacterium thermoresistibile [TaxId:1797] [334098] (7 PDB entries)
    1. Domain for 5jij:
    2. Domain for 5jio:
    3. Domain for 5k41:
    4. Domain for 5k42:
    5. Domain for 5k44:
    6. Domain for 5k5c:
    7. Domains for 5l3k:
      1. 2483933Domain d5l3ka_: 5l3k A: [335123]
        automated match to d5hxaa_
        complexed with adp, edo, f6p, po4
      2. 2483934Domain d5l3kb_: 5l3k B: [335314]
        automated match to d5hxaa_
        complexed with adp, edo, f6p, po4
      3. 2483935Domain d5l3kc_: 5l3k C: [335263]
        automated match to d5hxaa_
        complexed with adp, edo, f6p, po4
      4. 2483936Domain d5l3kd_: 5l3k D: [335257]
        automated match to d5hxaa_
        complexed with adp, edo, f6p, po4
      5. 2483937Domain d5l3ke_: 5l3k E: [335128]
        automated match to d5hxaa_
        complexed with adp, edo, f6p, po4
      6. 2483938Domain d5l3kf_: 5l3k F: [335061]
        automated match to d5hxaa_
        complexed with adp, edo, f6p, po4
      7. 2483939Domain d5l3kg_: 5l3k G: [335059]
        automated match to d5hxaa_
        complexed with adp, edo, f6p, po4
      8. 2483940Domain d5l3kh_: 5l3k H: [335129]
        automated match to d5hxaa_
        complexed with adp, edo, f6p, po4
  15. 2483941Neosartorya fumigata [TaxId:330879] [333731] (2 PDB entries)
    1. Domains for 5hvm:
      1. 2483946Domain d5hvma_: 5hvm A: [345677]
        automated match to d5uofb_
        complexed with udp, vdm
      2. 2483947Domain d5hvmb_: 5hvm B: [345678]
        automated match to d5uofb_
        complexed with udp, vdm
    2. Domains for 5hvo:
      1. 2483942Domain d5hvoa_: 5hvo A: [333732]
        automated match to d5hxaa_
        complexed with udp, vdm
      2. 2483943Domain d5hvob_: 5hvo B: [333791]
        automated match to d5hxaa_
        complexed with udp, vdm
      3. 2483944Domain d5hvoc_: 5hvo C: [333929]
        automated match to d5hxaa_
        complexed with udp, vdm
      4. 2483945Domain d5hvod_: 5hvo D: [333893]
        automated match to d5hxaa_
        complexed with udp, vdm
  16. 2483948Oryza sativa [TaxId:39947] [324764] (7 PDB entries)
    1. Domain for 5tmb:
    2. Domain for 5tmd:
    3. Domain for 5tme:
    4. Domain for 6bk0:
    5. Domain for 6bk1:
    6. Domain for 6bk2:
    7. Domain for 6bk3:
  17. 2483956Photobacterium damselae [TaxId:38293] [261399] (1 PDB entry)
  18. 2483958Photobacterium phosphoreum [TaxId:659] [188922] (1 PDB entry)
  19. 2483961Pseudomonas aeruginosa, PA01 [TaxId:208964] [197045] (1 PDB entry)
  20. 2483963Rickettsia bellii [TaxId:336407] [194265] (1 PDB entry)
  21. 2483965Saccharopolyspora spinosa [TaxId:60894] [311342] (3 PDB entries)
    1. Domains for 3tsa:
      1. 2483966Domain d3tsaa1: 3tsa A:1-385 [306590]
        Other proteins in same PDB: d3tsaa2
        automated match to d2p6pa_
        complexed with glc, mg
      2. 2483967Domain d3tsab_: 3tsa B: [306592]
        Other proteins in same PDB: d3tsaa2
        automated match to d2p6pa_
        complexed with glc, mg
    2. Domains for 3uyk:
      1. 2483968Domain d3uyka1: 3uyk A:1-386 [306668]
        Other proteins in same PDB: d3uyka2
        automated match to d2p6pa_
        complexed with 0cx, bgc, mg
      2. 2483969Domain d3uykb_: 3uyk B: [306670]
        Other proteins in same PDB: d3uyka2
        automated match to d2p6pa_
        complexed with 0cx, bgc, mg
    3. Domains for 3uyl:
      1. 2483970Domain d3uyla1: 3uyl A:1-385 [306671]
        Other proteins in same PDB: d3uyla2
        automated match to d2p6pa_
        complexed with glc, mg, tyd
      2. 2483971Domain d3uylb_: 3uyl B: [306673]
        Other proteins in same PDB: d3uyla2
        automated match to d2p6pa_
        complexed with glc, mg, tyd
  22. 2483972Staphylococcus aureus [TaxId:1280] [316643] (1 PDB entry)
  23. 2483975Streptomyces cyanogenus [TaxId:80860] [311430] (5 PDB entries)
    1. Domains for 4rie:
      1. 2483982Domain d4riea1: 4rie A:1-373 [309437]
        Other proteins in same PDB: d4riea2, d4rieb2
        automated match to d2p6pa_
      2. 2483983Domain d4rieb1: 4rie B:1-373 [309439]
        Other proteins in same PDB: d4riea2, d4rieb2
        automated match to d2p6pa_
    2. Domains for 4rif:
      1. 2483976Domain d4rifa1: 4rif A:1-373 [309441]
        Other proteins in same PDB: d4rifa2, d4rifb2
        automated match to d2p6pa_
        complexed with 3r2
      2. 2483977Domain d4rifb1: 4rif B:1-373 [309443]
        Other proteins in same PDB: d4rifa2, d4rifb2
        automated match to d2p6pa_
        complexed with 3r2
    3. Domains for 4rig:
      1. 2483978Domain d4riga1: 4rig A:1-373 [309445]
        Other proteins in same PDB: d4riga2, d4rigb2
        automated match to d2p6pa_
        complexed with mg
      2. 2483979Domain d4rigb1: 4rig B:1-373 [309447]
        Other proteins in same PDB: d4riga2, d4rigb2
        automated match to d2p6pa_
        complexed with mg
    4. Domains for 4rih:
      1. 2483984Domain d4riha_: 4rih A: [309449]
        Other proteins in same PDB: d4rihb2
        automated match to d2p6pa_
        complexed with 3r2, mg
      2. 2483985Domain d4rihb1: 4rih B:1-373 [309450]
        Other proteins in same PDB: d4rihb2
        automated match to d2p6pa_
        complexed with 3r2, mg
    5. Domains for 4rii:
      1. 2483980Domain d4riia1: 4rii A:1-373 [309452]
        Other proteins in same PDB: d4riia2, d4riib2
        automated match to d2p6pa_
        complexed with mg, tyd
      2. 2483981Domain d4riib1: 4rii B:1-373 [309454]
        Other proteins in same PDB: d4riia2, d4riib2
        automated match to d2p6pa_
        complexed with mg, tyd
  24. 2483986Streptomyces nogalater [TaxId:38314] [311356] (3 PDB entries)
    1. Domains for 4amb:
      1. 2483989Domain d4amba1: 4amb A:13-389 [307005]
        Other proteins in same PDB: d4amba2, d4ambb2
        automated match to d2p6pb_
        complexed with dud
      2. 2483990Domain d4ambb1: 4amb B:13-390 [307007]
        Other proteins in same PDB: d4amba2, d4ambb2
        automated match to d2p6pb_
        complexed with dud
    2. Domains for 4amg:
      1. 2483987Domain d4amga1: 4amg A:13-389 [307009]
        Other proteins in same PDB: d4amga2, d4amgb2
        automated match to d2p6pb_
      2. 2483988Domain d4amgb1: 4amg B:13-389 [307011]
        Other proteins in same PDB: d4amga2, d4amgb2
        automated match to d2p6pb_
    3. Domains for 4an4:
      1. 2483991Domain d4an4a1: 4an4 A:13-390 [307017]
        Other proteins in same PDB: d4an4a2, d4an4b2, d4an4c2, d4an4d2
        automated match to d2p6pb_
        complexed with dud
      2. 2483992Domain d4an4b1: 4an4 B:13-390 [307019]
        Other proteins in same PDB: d4an4a2, d4an4b2, d4an4c2, d4an4d2
        automated match to d2p6pb_
        complexed with dud
      3. 2483993Domain d4an4c1: 4an4 C:13-389 [307021]
        Other proteins in same PDB: d4an4a2, d4an4b2, d4an4c2, d4an4d2
        automated match to d2p6pb_
        complexed with dud
      4. 2483994Domain d4an4d1: 4an4 D:13-390 [307023]
        Other proteins in same PDB: d4an4a2, d4an4b2, d4an4c2, d4an4d2
        automated match to d2p6pb_
        complexed with dud
  25. 2483995Streptomyces sp. [TaxId:746675] [311382] (2 PDB entries)
    1. Domain for 4fzr:
    2. Domain for 4g2t:
  26. 2483998Streptomyces venezuelae [TaxId:953739] [346333] (1 PDB entry)
  27. 2484003Thale cress (Arabidopsis thaliana) [TaxId:3702] [256209] (8 PDB entries)
    1. Domains for 4bqe:
      1. 2484004Domain d4bqea_: 4bqe A: [251296]
        automated match to d3amva_
        complexed with gol, peg, pge, plp
      2. 2484005Domain d4bqeb_: 4bqe B: [251297]
        automated match to d3amva_
        complexed with gol, peg, pge, plp
    2. Domains for 4bqf:
      1. 2484016Domain d4bqfa_: 4bqf A: [251298]
        automated match to d3amva_
        complexed with glc, gol, plp, qps
      2. 2484017Domain d4bqfb_: 4bqf B: [251299]
        automated match to d3amva_
        complexed with glc, gol, plp, qps
    3. Domains for 4bqi:
      1. 2484006Domain d4bqia_: 4bqi A: [251300]
        automated match to d3amva_
        complexed with gol, mlr, peg, plp
      2. 2484007Domain d4bqib_: 4bqi B: [251301]
        automated match to d3amva_
        complexed with gol, mlr, peg, plp
    4. Domains for 5u6m:
      1. 2484018Domain d5u6ma_: 5u6m A: [344414]
        automated match to d5u6nb_
        complexed with bgc, sal, udp
      2. 2484019Domain d5u6mb_: 5u6m B: [333850]
        automated match to d2pq6a1
        complexed with bgc, sal, udp
    5. Domains for 5u6n:
      1. 2484010Domain d5u6na_: 5u6n A: [344415]
        automated match to d5u6nb_
        complexed with bgc, gln, lb2, sal, udp
      2. 2484011Domain d5u6nb_: 5u6n B: [333858]
        automated match to d2pq6a1
        complexed with bgc, gln, lb2, sal, udp
    6. Domains for 5u6s:
      1. 2484012Domain d5u6sa_: 5u6s A: [333890]
        automated match to d2pq6a1
        complexed with 7wv, bgc, lb2, udp
      2. 2484013Domain d5u6sb_: 5u6s B: [333855]
        automated match to d2pq6a1
        complexed with 7wv, bgc, lb2, udp
    7. Domains for 5v2j:
      1. 2484008Domain d5v2ja_: 5v2j A: [333999]
        automated match to d2pq6a1
        complexed with 7wv, bgc, lb2, udp
      2. 2484009Domain d5v2jb_: 5v2j B: [333940]
        automated match to d2pq6a1
        complexed with 7wv, bgc, lb2, udp
    8. Domains for 5v2k:
      1. 2484014Domain d5v2ka_: 5v2k A: [333973]
        automated match to d2pq6a1
        complexed with 7wv, bgc, lb2, udp
      2. 2484015Domain d5v2kb_: 5v2k B: [333990]
        automated match to d2pq6a1
        complexed with 7wv, bgc, lb2, udp
  28. 3050943Acinetobacter baumannii [TaxId:470] [351005] (3 PDB entries)
    1. Domain for 5xvs:
    2. Domains for 5zlr:
      1. 3052224Domain d5zlra1: 5zlr A:1-378 [352286]
        Other proteins in same PDB: d5zlra2, d5zlrb2
        automated match to d4zhtd_
        complexed with li, so4
      2. 3052263Domain d5zlrb1: 5zlr B:1-378 [352325]
        Other proteins in same PDB: d5zlra2, d5zlrb2
        automated match to d4zhtd_
        complexed with li, so4
    3. Domains for 5zlt:
      1. 3052238Domain d5zltb1: 5zlt B:1-378 [352300]
        Other proteins in same PDB: d5zlta2, d5zltb2, d5zltc2, d5zltd2
        automated match to d4zhtd_
        complexed with so4, udp
      2. 3052267Domain d5zlta1: 5zlt A:1-378 [352329]
        Other proteins in same PDB: d5zlta2, d5zltb2, d5zltc2, d5zltd2
        automated match to d4zhtd_
        complexed with so4, udp
      3. 3052276Domain d5zltc1: 5zlt C:1-378 [352338]
        Other proteins in same PDB: d5zlta2, d5zltb2, d5zltc2, d5zltd2
        automated match to d4zhtd_
        complexed with so4, udp
      4. 3052281Domain d5zltd1: 5zlt D:1-378 [352343]
        Other proteins in same PDB: d5zlta2, d5zltb2, d5zltc2, d5zltd2
        automated match to d4zhtd_
        complexed with so4, udp

More info for Protein automated matches from c.87.1.0: automated matches

Timeline for Protein automated matches from c.87.1.0: automated matches: