SCOPe 2.08: Domain d4amgb1: 4amg B:13-389

Lineage for d4amgb1 (4amg B:13-389)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.87: UDP-Glycosyltransferase/glycogen phosphorylase [53755] (1 superfamily)
   consists of two non-similar domains with 3 layers (a/b/a) each
   domain 1: parallel beta-sheet of 7 strands, order 3214567
   domain 2: parallel beta-sheet of 6 strands, order 321456

4. Superfamily c.87.1: UDP-Glycosyltransferase/glycogen phosphorylase [53756] (14 families)

5. Family c.87.1.0: automated matches [191559] (1 protein)
   not a true family

6. Protein automated matches [190965] (40 species)
   not a true protein

7. Species Streptomyces nogalater [TaxId:38314] [311356] (3 PDB entries)

8. Domain d4amgb1: 4amg B:13-389 [307011]
   Other proteins in same PDB: d4amga2, d4amgb2
   automated match to d2p6pb_

Details for d4amgb1

PDB Entry: 4amg, 2.59 Å

PDB Description: Crystal structure of the glycosyltransferase SnogD from Streptomyces nogalater

PDB Compounds: (B:) snogd

SCOPe Domain Sequences for d4amgb1:

Sequence, based on SEQRES records:

>d4amgb1 c.87.1.0 (B:13-389) automated matches {Streptomyces nogalater [TaxId: 38314]}
mralfitspglshilptvplaqalralghevryatggdiravaeaglcavdvspgvnyak
lfvpddtdvtdpmhseglgegffaemfarvsavavdgalrtarswrpdlvvhtptqgagp
ltaaalqlpcvelplgpadsepglgalirramskdyerhgvtgeptgsvrltttppsvea
llpedrrspgawpmryvpynggavlpdwlppaagrrriavtlgsidalsggiaklaplfs
evadvdaefvltlgggdlallgelpanvrvvewiplgalletcdaiihhggsgtlltala
agvpqcviphgsyqdtnrdvltglgigfdaeagslgaeqcrrllddaglreaalrvrqem
sempppaetaaklvala

Sequence, based on observed residues (ATOM records):

>d4amgb1 c.87.1.0 (B:13-389) automated matches {Streptomyces nogalater [TaxId: 38314]}
mralfitspglshilptvplaqalralghevryatggdiravaeaglcavdvspgvnyak
lfvpddpmhseglgegffaemfarvsavavdgalrtarswrpdlvvhtptqgagpltaaa
lqlpcvelplgpadsepglgalirramskdyerhgvtgeptgsvrltttppsveallped
rrspgawpmryvpynggavlpdwlppaagrrriavtlgsidalsggiaklaplfsevadv
daefvltlgggdlallgelpanvrvvewiplgalletcdaiihhggsgtlltalaagvpq
cviphgtnrdvltglgigfdaeagslgaeqcrrllddaglreaalrvrqemsempppaet
aaklvala

Timeline for d4amgb1:

• d4amgb1 first appeared in SCOPe 2.06
  
• d4amgb1 appears in SCOPe 2.07