PDB entry 5v0t

View 5v0t on RCSB PDB site
Description: Crystal structure of an alpha,alpha-trehalose-phosphate synthase (UDP-forming) from Burkholderia xenovorans in complex with glucose-6-phosphate
Class: transferase
Keywords: SSGCID, Burkholderia xenovorans, alpha, alpha-trehalose-phosphate synthase, UDP, glucose-6-phosphate, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, TRANSFERASE
Deposited on 2017-02-28, released 2017-04-05
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 1.95 Å
R-factor: N/A
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Alpha,alpha-trehalose-phosphate synthase (UDP-forming)
    Species: Burkholderia xenovorans (strain LB400) [TaxId:266265]
    Gene: Bxe_A1242
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5v0ta_
  • Chain 'B':
    Compound: Alpha,alpha-trehalose-phosphate synthase (UDP-forming)
    Species: Burkholderia xenovorans (strain LB400) [TaxId:266265]
    Gene: Bxe_A1242
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5v0tb_
  • Chain 'C':
    Compound: Alpha,alpha-trehalose-phosphate synthase (UDP-forming)
    Species: Burkholderia xenovorans (strain LB400) [TaxId:266265]
    Gene: Bxe_A1242
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5v0tc_
  • Chain 'D':
    Compound: Alpha,alpha-trehalose-phosphate synthase (UDP-forming)
    Species: Burkholderia xenovorans (strain LB400) [TaxId:266265]
    Gene: Bxe_A1242
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5v0td_
  • Chain 'E':
    Compound: Alpha,alpha-trehalose-phosphate synthase (UDP-forming)
    Species: Burkholderia xenovorans (strain LB400) [TaxId:266265]
    Gene: Bxe_A1242
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5v0te_
  • Chain 'F':
    Compound: Alpha,alpha-trehalose-phosphate synthase (UDP-forming)
    Species: Burkholderia xenovorans (strain LB400) [TaxId:266265]
    Gene: Bxe_A1242
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5v0tf_
  • Chain 'G':
    Compound: Alpha,alpha-trehalose-phosphate synthase (UDP-forming)
    Species: Burkholderia xenovorans (strain LB400) [TaxId:266265]
    Gene: Bxe_A1242
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5v0tg_
  • Chain 'H':
    Compound: Alpha,alpha-trehalose-phosphate synthase (UDP-forming)
    Species: Burkholderia xenovorans (strain LB400) [TaxId:266265]
    Gene: Bxe_A1242
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5v0th_
  • Heterogens: UDP, G6P, EDO, ACT, OXD, FMT, TAR, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5v0tA (A:)
mahhhhhhmgrliivsnrvapiseggpaagglavgvydalketggmwfgwsgdvlssgqp
qikveergpvtfatialmrrdydqyyrgfsnatlwpafhyradllqydrhdfegywrvna
wlaqqlvpllreddviwvhdyhlipfaqalraagvknrigfflhipfpasqvllavpphr
elvealcsfdllgfqtapdlrafcdyivneangtadpsasgpltihafgrtlraaaypig
vypdeiaelakagergkpvrtmkatlhsrklimsvdrldyskglverfraferllehsta
qrnkvsflqiapptradmhayqdirlqlegesgringrfaeldwtpilyihkqyersvla
alfrtahvgyvtplrdgmnlvakeyvsaqdpenpgvlvlsrfagaaqeldgalivnpvdi
dgmaealaraldmplaerqarhrdmmvqlrennvsvwrdnfmrdlqgvagakgtrngkar
avagkkaaretqag

    Sequence, based on observed residues (ATOM records): (download) 
    >5v0tA (A:)
grliivsnrvapipaagglavgvydalketggmwfgwsgdvlssgqpqikveergpvtfa
tialmrrdydqyyrgfsnatlwpafhyradllqydrhdfegywrvnawlaqqlvpllred
dviwvhdyhlipfaqalraagvknrigfflhipfpasqvllavpphrelvealcsfdllg
fqtapdlrafcdyivneangtadpsasgpltihafgrtlraaaypigvypdeiaelakag
ergkpvrtmkatlhsrklimsvdrldyskglverfraferllehstaqrnkvsflqiapp
tradmhayqdirlqlegesgringrfaeldwtpilyihkqyersvlaalfrtahvgyvtp
lrdgmnlvakeyvsaqdpenpgvlvlsrfagaaqeldgalivnpvdidgmaealaraldm
plaerqarhrdmmvqlrennvsvwrdnfmrdlqg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5v0tB (B:)
mahhhhhhmgrliivsnrvapiseggpaagglavgvydalketggmwfgwsgdvlssgqp
qikveergpvtfatialmrrdydqyyrgfsnatlwpafhyradllqydrhdfegywrvna
wlaqqlvpllreddviwvhdyhlipfaqalraagvknrigfflhipfpasqvllavpphr
elvealcsfdllgfqtapdlrafcdyivneangtadpsasgpltihafgrtlraaaypig
vypdeiaelakagergkpvrtmkatlhsrklimsvdrldyskglverfraferllehsta
qrnkvsflqiapptradmhayqdirlqlegesgringrfaeldwtpilyihkqyersvla
alfrtahvgyvtplrdgmnlvakeyvsaqdpenpgvlvlsrfagaaqeldgalivnpvdi
dgmaealaraldmplaerqarhrdmmvqlrennvsvwrdnfmrdlqgvagakgtrngkar
avagkkaaretqag

    Sequence, based on observed residues (ATOM records): (download) 
    >5v0tB (B:)
grliivsnrvappaagglavgvydalketggmwfgwsgdvlssgqpqikveergpvtfat
ialmrrdydqyyrgfsnatlwpafhyradllqydrhdfegywrvnawlaqqlvpllredd
viwvhdyhlipfaqalraagvknrigfflhipfpasqvllavpphrelvealcsfdllgf
qtapdlrafcdyivneangtadpsasgpltihafgrtlraaaypigvypdeiaelakage
rgkpvrtmkatlhsrklimsvdrldyskglverfraferllehstaqrnkvsflqiappt
radmhayqdirlqlegesgringrfaeldwtpilyihkqyersvlaalfrtahvgyvtpl
rdgmnlvakeyvsaqdpenpgvlvlsrfagaaqeldgalivnpvdidgmaealaraldmp
laerqarhrdmmvqlrennvsvwrdnfmrdlqg

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5v0tC (C:)
mahhhhhhmgrliivsnrvapiseggpaagglavgvydalketggmwfgwsgdvlssgqp
qikveergpvtfatialmrrdydqyyrgfsnatlwpafhyradllqydrhdfegywrvna
wlaqqlvpllreddviwvhdyhlipfaqalraagvknrigfflhipfpasqvllavpphr
elvealcsfdllgfqtapdlrafcdyivneangtadpsasgpltihafgrtlraaaypig
vypdeiaelakagergkpvrtmkatlhsrklimsvdrldyskglverfraferllehsta
qrnkvsflqiapptradmhayqdirlqlegesgringrfaeldwtpilyihkqyersvla
alfrtahvgyvtplrdgmnlvakeyvsaqdpenpgvlvlsrfagaaqeldgalivnpvdi
dgmaealaraldmplaerqarhrdmmvqlrennvsvwrdnfmrdlqgvagakgtrngkar
avagkkaaretqag

    Sequence, based on observed residues (ATOM records): (download) 
    >5v0tC (C:)
grliivsnrvapipaagglavgvydalketggmwfgwsgdvlssgqpqikveergpvtfa
tialmrrdydqyyrgfsnatlwpafhyradllqydrhdfegywrvnawlaqqlvpllred
dviwvhdyhlipfaqalraagvknrigfflhipfpasqvllavpphrelvealcsfdllg
fqtapdlrafcdyivneangtadpsgpltihafgrtlraaaypigvypdeiaelakager
gkpvrtmkatlhsrklimsvdrldyskglverfraferllehstaqrnkvsflqiapptr
admhayqdirlqlegesgringrfaeldwtpilyihkqyersvlaalfrtahvgyvtplr
dgmnlvakeyvsaqdpenpgvlvlsrfagaaqeldgalivnpvdidgmaealaraldmpl
aerqarhrdmmvqlrennvsvwrdnfmrdlqg

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5v0tD (D:)
mahhhhhhmgrliivsnrvapiseggpaagglavgvydalketggmwfgwsgdvlssgqp
qikveergpvtfatialmrrdydqyyrgfsnatlwpafhyradllqydrhdfegywrvna
wlaqqlvpllreddviwvhdyhlipfaqalraagvknrigfflhipfpasqvllavpphr
elvealcsfdllgfqtapdlrafcdyivneangtadpsasgpltihafgrtlraaaypig
vypdeiaelakagergkpvrtmkatlhsrklimsvdrldyskglverfraferllehsta
qrnkvsflqiapptradmhayqdirlqlegesgringrfaeldwtpilyihkqyersvla
alfrtahvgyvtplrdgmnlvakeyvsaqdpenpgvlvlsrfagaaqeldgalivnpvdi
dgmaealaraldmplaerqarhrdmmvqlrennvsvwrdnfmrdlqgvagakgtrngkar
avagkkaaretqag

    Sequence, based on observed residues (ATOM records): (download) 
    >5v0tD (D:)
grliivsnrvapipaagglavgvydalketggmwfgwsgdvlssgqpqikveergpvtfa
tialmrrdydqyyrgfsnatlwpafhyradllqydrhdfegywrvnawlaqqlvpllred
dviwvhdyhlipfaqalraagvknrigfflhipfpasqvllavpphrelvealcsfdllg
fqtapdlrafcdyivneangtadpsgpltihafgrtlraaaypigvypdeiaelakager
gkpvrtmkatlhsrklimsvdrldyskglverfraferllehstaqrnkvsflqiapptr
admhayqdirlqlegesgringrfaeldwtpilyihkqyersvlaalfrtahvgyvtplr
dgmnlvakeyvsaqdpenpgvlvlsrfagaaqeldgalivnpvdidgmaealaraldmpl
aerqarhrdmmvqlrennvsvwrdnfmrdlqg

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >5v0tE (E:)
mahhhhhhmgrliivsnrvapiseggpaagglavgvydalketggmwfgwsgdvlssgqp
qikveergpvtfatialmrrdydqyyrgfsnatlwpafhyradllqydrhdfegywrvna
wlaqqlvpllreddviwvhdyhlipfaqalraagvknrigfflhipfpasqvllavpphr
elvealcsfdllgfqtapdlrafcdyivneangtadpsasgpltihafgrtlraaaypig
vypdeiaelakagergkpvrtmkatlhsrklimsvdrldyskglverfraferllehsta
qrnkvsflqiapptradmhayqdirlqlegesgringrfaeldwtpilyihkqyersvla
alfrtahvgyvtplrdgmnlvakeyvsaqdpenpgvlvlsrfagaaqeldgalivnpvdi
dgmaealaraldmplaerqarhrdmmvqlrennvsvwrdnfmrdlqgvagakgtrngkar
avagkkaaretqag

    Sequence, based on observed residues (ATOM records): (download) 
    >5v0tE (E:)
grliivsnrvapiseggpaagglavgvydalketggmwfgwsgdvlssgqpqikveergp
vtfatialmrrdydqyyrgfsnatlwpafhyradllqydrhdfegywrvnawlaqqlvpl
lreddviwvhdyhlipfaqalraagvknrigfflhipfpasqvllavpphrelvealcsf
dllgfqtapdlrafcdyivneangtadpsasgpltihafgrtlraaaypigvypdeiael
akagergkpvrtmkatlhsrklimsvdrldyskglverfraferllehstaqrnkvsflq
iapptradmhayqdirlqlegesgringrfaeldwtpilyihkqyersvlaalfrtahvg
yvtplrdgmnlvakeyvsaqdpenpgvlvlsrfagaaqeldgalivnpvdidgmaealar
aldmplaerqarhrdmmvqlrennvsvwrdnfmrdlq

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >5v0tF (F:)
mahhhhhhmgrliivsnrvapiseggpaagglavgvydalketggmwfgwsgdvlssgqp
qikveergpvtfatialmrrdydqyyrgfsnatlwpafhyradllqydrhdfegywrvna
wlaqqlvpllreddviwvhdyhlipfaqalraagvknrigfflhipfpasqvllavpphr
elvealcsfdllgfqtapdlrafcdyivneangtadpsasgpltihafgrtlraaaypig
vypdeiaelakagergkpvrtmkatlhsrklimsvdrldyskglverfraferllehsta
qrnkvsflqiapptradmhayqdirlqlegesgringrfaeldwtpilyihkqyersvla
alfrtahvgyvtplrdgmnlvakeyvsaqdpenpgvlvlsrfagaaqeldgalivnpvdi
dgmaealaraldmplaerqarhrdmmvqlrennvsvwrdnfmrdlqgvagakgtrngkar
avagkkaaretqag

    Sequence, based on observed residues (ATOM records): (download) 
    >5v0tF (F:)
grliivsnrvapiseggpaagglavgvydalketggmwfgwsgdvlssgqpqikveergp
vtfatialmrrdydqyyrgfsnatlwpafhyradllqydrhdfegywrvnawlaqqlvpl
lreddviwvhdyhlipfaqalraagvknrigfflhipfpasqvllavpphrelvealcsf
dllgfqtapdlrafcdyivneangtadpgpltihafgrtlraaaypigvypdeiaelaka
gergkpvrtmkatlhsrklimsvdrldyskglverfraferllehstaqrnkvsflqiap
ptradmhayqdirlqlegesgringrfaeldwtpilyihkqyersvlaalfrtahvgyvt
plrdgmnlvakeyvsaqdpenpgvlvlsrfagaaqeldgalivnpvdidgmaealarald
mplaerqarhrdmmvqlrennvsvwrdnfmrdlqg

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >5v0tG (G:)
mahhhhhhmgrliivsnrvapiseggpaagglavgvydalketggmwfgwsgdvlssgqp
qikveergpvtfatialmrrdydqyyrgfsnatlwpafhyradllqydrhdfegywrvna
wlaqqlvpllreddviwvhdyhlipfaqalraagvknrigfflhipfpasqvllavpphr
elvealcsfdllgfqtapdlrafcdyivneangtadpsasgpltihafgrtlraaaypig
vypdeiaelakagergkpvrtmkatlhsrklimsvdrldyskglverfraferllehsta
qrnkvsflqiapptradmhayqdirlqlegesgringrfaeldwtpilyihkqyersvla
alfrtahvgyvtplrdgmnlvakeyvsaqdpenpgvlvlsrfagaaqeldgalivnpvdi
dgmaealaraldmplaerqarhrdmmvqlrennvsvwrdnfmrdlqgvagakgtrngkar
avagkkaaretqag

    Sequence, based on observed residues (ATOM records): (download) 
    >5v0tG (G:)
grliivsnrvapipaagglavgvydalketggmwfgwsgdvlssgqpqikveergpvtfa
tialmrrdydqyyrgfsnatlwpafhyradllqydrhdfegywrvnawlaqqlvpllred
dviwvhdyhlipfaqalraagvknrigfflhipfpasqvllavpphrelvealcsfdllg
fqtapdlrafcdyivneangtadpsasgpltihafgrtlraaaypigvypdeiaelakag
ergkpvrtmkatlhsrklimsvdrldyskglverfraferllehstaqrnkvsflqiapp
tradmhayqdirlqlegesgringrfaeldwtpilyihkqyersvlaalfrtahvgyvtp
lrdgmnlvakeyvsaqdpenpgvlvlsrfagaaqeldgalivnpvdidgmaealaraldm
plaerqarhrdmmvqlrennvsvwrdnfmrdlqg

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >5v0tH (H:)
mahhhhhhmgrliivsnrvapiseggpaagglavgvydalketggmwfgwsgdvlssgqp
qikveergpvtfatialmrrdydqyyrgfsnatlwpafhyradllqydrhdfegywrvna
wlaqqlvpllreddviwvhdyhlipfaqalraagvknrigfflhipfpasqvllavpphr
elvealcsfdllgfqtapdlrafcdyivneangtadpsasgpltihafgrtlraaaypig
vypdeiaelakagergkpvrtmkatlhsrklimsvdrldyskglverfraferllehsta
qrnkvsflqiapptradmhayqdirlqlegesgringrfaeldwtpilyihkqyersvla
alfrtahvgyvtplrdgmnlvakeyvsaqdpenpgvlvlsrfagaaqeldgalivnpvdi
dgmaealaraldmplaerqarhrdmmvqlrennvsvwrdnfmrdlqgvagakgtrngkar
avagkkaaretqag

    Sequence, based on observed residues (ATOM records): (download) 
    >5v0tH (H:)
rliivsnrvapiagglavgvydalketggmwfgwsgdvlssgqpqikveergpvtfatia
lmrrdydqyyrgfsnatlwpafhyradllqydrhdfegywrvnawlaqqlvpllreddvi
wvhdyhlipfaqalraagvknrigfflhipfpasqvllavpphrelvealcsfdllgfqt
apdlrafcdyivneangtadpsasgpltihafgrtlraaaypigvypdeiaelakagerg
kpvrtmkatlhsrklimsvdrldyskglverfraferllehstaqrnkvsflqiapptra
dmhayqdirlqlegesgringrfaeldwtpilyihkqyersvlaalfrtahvgyvtplrd
gmnlvakeyvsaqdpenpgvlvlsrfagaaqeldgalivnpvdidgmaealaraldmpla
erqarhrdmmvqlrennvsvwrdnfmrdlqg