PDB entry 5tmd

View 5tmd on RCSB PDB site
Description: Crystal structure of Os79 from O. sativa in complex with U2F and trichothecene.
Class: transferase
Keywords: mycotoxin, UDP-glucosyltransferase, trichothecene, detoxification, TRANSFERASE
Deposited on 2016-10-12, released 2016-11-02
The last revision prior to the SCOPe 2.08 freeze date was dated 2016-12-21, with a file datestamp of 2016-12-16.
Experiment type: XRAY
Resolution: 2.19 Å
R-factor: N/A
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Glycosyltransferase, Os79
    Species: Oryza sativa subsp. japonica [TaxId:39947]
    Gene: Os04g0206600, Os04g0206600, OSJNBa0052O21.15, OSNPB_040206600
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5tmda_
  • Heterogens: U2F, 7E0, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5tmdA (A:)
gmgsmstpaasanggqvlllpfpaaqghtnpmlqfgrrlayhglrptlvttryvlsttpp
pgdpfrvaaisdgfddasgmaalpdpgeylrtleahgartlaelllsearagrparvlvy
dphlpwarrvaraagvataaflsqpcavdliygevcarrlalpvtptdarglyargvlgv
elgpddvppfvaapeltpafceqsieqfagleddddvlvnsfsdlepkeaaymestwrak
tigpslpsfylddgrlrsntaygfnlfrstvpcmewldkqpprsvvlvsygtvstfdvak
leelgnglcnsgkpflwvvrsneehklsvqlrkkcekrglivpfcpqlevlahkatgcfl
shcgwnstleaivngvplvamphwadqptiskyveslwgmgvrvqldksgilqreeverc
irevmdgdrkedyrrnatrlmkkakesmqeggssdkniaefaakysn

    Sequence, based on observed residues (ATOM records): (download) 
    >5tmdA (A:)
qvlllpfpaaqghtnpmlqfgrrlayhglrptlvttryvlsttpppgdpfrvaaisdgfd
dasgmaalpdpgeylrtleahgartlaelllsearagrparvlvydphlpwarrvaraag
vataaflsqpcavdliygevcarrlalpvtptdarglyargvlgvelgpddvppfvaape
ltpafceqsieqfagleddddvlvnsfsdlepkeaaymestwraktigpslpsfylddgr
frstvpcmewldkqpprsvvlvsygtvstfdvakleelgnglcnsgkpflwvvrsneehk
lsvqlrkkcekrglivpfcpqlevlahkatgcflshcgwnstleaivngvplvamphwad
qptiskyveslwgmgvrvqldksgilqreevercirevmdgdrkedyrrnatrlmkkake
smqeggssdkniaefaakys