PDB entry 6vlc

View 6vlc on RCSB PDB site
Description: Crystal structure of UDP-GlcNAc 2-epimerase from Neisseria meningitidis bound to UDP-GlcNAc
Class: isomerase
Keywords: Epimerase UDP-GlcNAc UDP-ManNAc UDP-GlcNAc 2-epimerase, ISOMERASE
Deposited on 2020-01-23, released 2020-11-11
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-11-18, with a file datestamp of 2020-11-13.
Experiment type: XRAY
Resolution: 2.15 Å
R-factor: N/A
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: udp-n-acetylglucosamine 2-epimerase
    Species: Neisseria meningitidis Z2491 [TaxId:122587]
    Gene: sacA, NMA0199
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6vlca_
  • Chain 'B':
    Compound: udp-n-acetylglucosamine 2-epimerase
    Species: Neisseria meningitidis Z2491 [TaxId:122587]
    Gene: sacA, NMA0199
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6vlcb_
  • Chain 'C':
    Compound: udp-n-acetylglucosamine 2-epimerase
    Species: Neisseria meningitidis Z2491 [TaxId:122587]
    Gene: sacA, NMA0199
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6vlcc_
  • Chain 'D':
    Compound: udp-n-acetylglucosamine 2-epimerase
    Species: Neisseria meningitidis Z2491 [TaxId:122587]
    Gene: sacA, NMA0199
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6vlcd_
  • Heterogens: UD1, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6vlcA (A:)
mkvltvfgtrpeaikmapvilelqkhntitskvcitaqhremldqvlslfeikadydlni
mkpnqslqeittniissltdvledfkpdcvlvhgdttttfaaslaafyqkipvghieagl
rtynlyspwpeeanrrltsvlsqwhfaptedsknnllsesipsdkvivtgntvidalmvs
leklkittikkqmeqafpfiqdnskvilitahrrenhgegikniglsilelakkyptfsf
viplhlnpnvrkpiqdllssvhnvhliepqeylpfvylmskshiilsdsggiqeeapslg
kpvlvlrdtterpeavaagtvklvgsetqniiesftqlieypeyyekmanienpygigna
skiivetllknrlehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6vlcA (A:)
mkvltvfgtrpeaikmapvilelqkhntitskvcitaqhremldqvlslfeikadydlni
mkpnqslqeittniissltdvledfkpdcvlvhgdttttfaaslaafyqkipvghieagl
rtynlyspwpeeanrrltsvlsqwhfaptedsknnllsesipsdkvivtgntvidalmvs
leklkittikkqmeqafpfiqdnskvilitahrrenhgegikniglsilelakkyptfsf
viplhlnpnvrkpiqdllssvhnvhliepqeylpfvylmskshiilsdsggiqeeapslg
kpvlvlrdtterpeavaagtvklvgsetqniiesftqlieypeyyekmanienpygigna
skiivetllkn

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6vlcB (B:)
mkvltvfgtrpeaikmapvilelqkhntitskvcitaqhremldqvlslfeikadydlni
mkpnqslqeittniissltdvledfkpdcvlvhgdttttfaaslaafyqkipvghieagl
rtynlyspwpeeanrrltsvlsqwhfaptedsknnllsesipsdkvivtgntvidalmvs
leklkittikkqmeqafpfiqdnskvilitahrrenhgegikniglsilelakkyptfsf
viplhlnpnvrkpiqdllssvhnvhliepqeylpfvylmskshiilsdsggiqeeapslg
kpvlvlrdtterpeavaagtvklvgsetqniiesftqlieypeyyekmanienpygigna
skiivetllknrlehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6vlcB (B:)
mkvltvfgtrpeaikmapvilelqkhntitskvcitaqhremldqvlslfeikadydlni
mkpnqslqeittniissltdvledfkpdcvlvhgdttttfaaslaafyqkipvghieagl
rtynlyspwpeeanrrltsvlsqwhfaptedsknnllsesipsdkvivtgntvidalmvs
leklkittikkqmeqafpfiqdnskvilitahgegikniglsilelakkyptfsfviplh
lnpnvrkpiqdllssvhnvhliepqeylpfvylmskshiilsdsggiqeeapslgkpvlv
lrdtterpeavaagtvklvgsetqniiesftqlieypeyyekmanienpygignaskiiv
etllkn

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6vlcC (C:)
mkvltvfgtrpeaikmapvilelqkhntitskvcitaqhremldqvlslfeikadydlni
mkpnqslqeittniissltdvledfkpdcvlvhgdttttfaaslaafyqkipvghieagl
rtynlyspwpeeanrrltsvlsqwhfaptedsknnllsesipsdkvivtgntvidalmvs
leklkittikkqmeqafpfiqdnskvilitahrrenhgegikniglsilelakkyptfsf
viplhlnpnvrkpiqdllssvhnvhliepqeylpfvylmskshiilsdsggiqeeapslg
kpvlvlrdtterpeavaagtvklvgsetqniiesftqlieypeyyekmanienpygigna
skiivetllknrlehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6vlcC (C:)
mkvltvfgtrpeaikmapvilelqkhntitskvcitaqhremldqvlslfeikadydlni
mkpnqslqeittniissltdvledfkpdcvlvhgdttttfaaslaafyqkipvghieagl
rtynlyspwpeeanrrltsvlsqwhfaptedsknnllsesipsdkvivtgntvidalmvs
leklkittikkqmeqafpfiqdnskvilitahrrenhgegikniglsilelakkyptfsf
viplhlnpnvrkpiqdllssvhnvhliepqeylpfvylmskshiilsdsggiqeeapslg
kpvlvlrdtterpeavaagtvklvgsetqniiesftqlieypeyyekmanienpygigna
skiivetllkn

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6vlcD (D:)
mkvltvfgtrpeaikmapvilelqkhntitskvcitaqhremldqvlslfeikadydlni
mkpnqslqeittniissltdvledfkpdcvlvhgdttttfaaslaafyqkipvghieagl
rtynlyspwpeeanrrltsvlsqwhfaptedsknnllsesipsdkvivtgntvidalmvs
leklkittikkqmeqafpfiqdnskvilitahrrenhgegikniglsilelakkyptfsf
viplhlnpnvrkpiqdllssvhnvhliepqeylpfvylmskshiilsdsggiqeeapslg
kpvlvlrdtterpeavaagtvklvgsetqniiesftqlieypeyyekmanienpygigna
skiivetllknrlehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6vlcD (D:)
mkvltvfgtrpeaikmapvilelqkhntitskvcitaqhremldqvlslfeikadydlni
mkpnqslqeittniissltdvledfkpdcvlvhgdttttfaaslaafyqkipvghieagl
rtynlyspwpeeanrrltsvlsqwhfaptedsknnllsesipsdkvivtgntvidalmvs
leklkittikkqmeqafpfiqdnskvilitahegikniglsilelakkyptfsfviplhl
npnvrkpiqdllssvhnvhliepqeylpfvylmskshiilsdsggiqeeapslgkpvlvl
rdtterpeavaagtvklvgsetqniiesftqlieypeyyekmanienpygignaskiive
tllkn