Species:

1. Bovine viral diarrhea virus [TaxId:11099] [255087] (1 PDB entry)

   • Domain for 2cjq:

     • Domain d2cjqa_: 2cjq A: [241454] automated match to d1s48a_

2. Coxsackievirus b3 [TaxId:103903] [188493] (5 PDB entries)

   1. Domain for 3cdu:

      • Domain d3cdua1: 3cdu A:1-462 [173167] Other proteins in same PDB: d3cdua2 automated match to d1ra6a_ protein/RNA complex; complexed with act, cl, gol, pop, so4

   2. Domain for 3cdw:

      • Domain d3cdwa1: 3cdw A:1-462 [173169] Other proteins in same PDB: d3cdwa2 automated match to d1ra6a_ protein/RNA complex; complexed with act, cl, gol, pop

   3. Domain for 4wfx:

      • Domain d4wfxa_: 4wfx A: [260849] automated match to d4k4za_ complexed with na; mutant

   4. Domain for 4wfy:

      • Domain d4wfya_: 4wfy A: [260614] automated match to d4k4za_ complexed with gol, so4; mutant

   5. Domain for 4wfz:

      • Domain d4wfza_: 4wfz A: [260608] automated match to d4k4za_ complexed with na

3. Coxsackievirus b3 [TaxId:12072] [271111] (10 PDB entries)

   1. Domain for 4y2a:

      • Domain d4y2aa1: 4y2a A:1-462 [271112] Other proteins in same PDB: d4y2aa2 automated match to d4wfza_ complexed with 1fs, gol, so4

   2. Domain for 4y34:

      • Domain d4y34a1: 4y34 A:1-462 [271113] Other proteins in same PDB: d4y34a2 automated match to d4wfza_ complexed with 45z, gol, so4

   3. Domain for 4zp6:

      • Domain d4zp6a1: 4zp6 A:1-462 [317356] Other proteins in same PDB: d4zp6a2 automated match to d4nlya_ complexed with so4; mutant

   4. Domain for 4zp7:

      • Domain d4zp7a_: 4zp7 A: [317341] automated match to d4nlya_ mutant

   5. Domain for 4zp8:

      • Domain d4zp8a_: 4zp8 A: [317346] automated match to d4nlya_ mutant

   6. Domain for 4zp9:

      • Domain d4zp9a_: 4zp9 A: [317355] automated match to d4nlya_ mutant

   7. Domain for 4zpa:

      • Domain d4zpaa_: 4zpa A: [317316] automated match to d4nlya_ complexed with so4; mutant

   8. Domain for 4zpb:

      • Domain d4zpba_: 4zpb A: [317342] automated match to d4nlya_ mutant

   9. Domain for 4zpc:

      • Domain d4zpca_: 4zpc A: [317375] automated match to d4nlya_ mutant

   10. Domain for 4zpd:

       • Domain d4zpda_: 4zpd A: [317348] automated match to d4nlya_ mutant

4. Enterovirus d68 [TaxId:42789] [336371] (3 PDB entries)

   1. Domain for 5xe0:

      • Domain d5xe0a_: 5xe0 A: [336372] automated match to d4wfxa_ protein/RNA complex; complexed with gtp

   2. Domain for 5ziu:

      • Domain d5ziua_: 5ziu A: [367958] automated match to d5xe0a_ protein/RNA complex; complexed with gol, peg

   3. Domain for 6l4r:

      • Domain d6l4ra_: 6l4r A: [387205] automated match to d5xe0a_

5. Foot-and-mouth disease virus [TaxId:12120] [272422] (2 PDB entries)

   1. Domain for 4wyl:

      • Domain d4wyla1: 4wyl A:1-470 [272423] Other proteins in same PDB: d4wyla2 automated match to d3nkya_ complexed with act, gol, mn; mutant

   2. Domain for 4wyw:

      • Domain d4wywa1: 4wyw A:1-470 [272424] Other proteins in same PDB: d4wywa2 automated match to d3nkya_ complexed with 3po, act, gol; mutant

6. Hepacivirus c [TaxId:11103] [360486] (4 PDB entries)

   1. Domain for 5qj0:

      • Domain d5qj0a_: 5qj0 A: [360505] automated match to d5pzoa_ protein/RNA complex; complexed with 2pe, gol, j6d, scn

   2. Domain for 5qj1:

      • Domain d5qj1a_: 5qj1 A: [360487] automated match to d5pzoa_ protein/RNA complex; complexed with gol, j6j, pg4, so4

   3. Domain for 6gp9:

      • Domain d6gp9a_: 6gp9 A: [390102] automated match to d1yvfa_

   4. Domains for 6mvo:

      1. Domain d6mvoa_: 6mvo A: [373655] automated match to d2ax0a_ complexed with k4p, so4

      2. Domain d6mvob_: 6mvo B: [373631] automated match to d2ax0a_ complexed with k4p, so4

7. Hepatitis B virus [TaxId:10407] [259720] (1 PDB entry)

   • Domain for 4tn2:

     • Domain d4tn2a_: 4tn2 A: [259721] automated match to d3gnwb_ complexed with 33j

8. Hepatitis C virus (isolate 1) [TaxId:11104] [261697] (1 PDB entry)

   • Domain for 4tlr:

     • Domain d4tlra_: 4tlr A: [261698] automated match to d3gnwb_ complexed with 33h, 79z

9. Hepatitis C virus genotype 1b (isolate bk) [TaxId:11105] [188687] (17 PDB entries)

   1. Domain for 2wcx:

      • Domain d2wcxa_: 2wcx A: [206770] automated match to d4e78a_ protein/RNA complex; complexed with mn, vgc

   2. Domains for 3bsa:

      1. Domain d3bsaa_: 3bsa A: [172807] automated match to d1nb4a_ protein/RNA complex; complexed with 1pd

      2. Domain d3bsab_: 3bsa B: [172808] automated match to d1nb4a_ protein/RNA complex; complexed with 1pd

   3. Domains for 3bsc:

      1. Domain d3bsca_: 3bsc A: [172809] automated match to d1nb4a_ protein/RNA complex; complexed with 2pd

      2. Domain d3bscb_: 3bsc B: [172810] automated match to d1nb4a_ protein/RNA complex; complexed with 2pd

   4. Domains for 3co9:

      1. Domain d3co9a_: 3co9 A: [173368] automated match to d1nb4a_ protein/RNA complex; complexed with 3ms

      2. Domain d3co9b_: 3co9 B: [173369] automated match to d1nb4a_ protein/RNA complex; complexed with 3ms

   5. Domains for 3cvk:

      1. Domain d3cvka_: 3cvk A: [173501] automated match to d1nb4a_ protein/RNA complex; complexed with n34

      2. Domain d3cvkb_: 3cvk B: [173502] automated match to d1nb4a_ protein/RNA complex; complexed with n34

   6. Domains for 3d28:

      1. Domain d3d28a_: 3d28 A: [173632] automated match to d1nb4a_ protein/RNA complex; complexed with b34

      2. Domain d3d28b_: 3d28 B: [173633] automated match to d1nb4a_ protein/RNA complex; complexed with b34

   7. Domains for 3d5m:

      1. Domain d3d5ma_: 3d5m A: [173699] automated match to d1nb4a_ protein/RNA complex; complexed with 4ms

      2. Domain d3d5mb_: 3d5m B: [173700] automated match to d1nb4a_ protein/RNA complex; complexed with 4ms

   8. Domains for 3e51:

      1. Domain d3e51a_: 3e51 A: [174667] automated match to d1nb4a_ protein/RNA complex; complexed with n35

      2. Domain d3e51b_: 3e51 B: [174668] automated match to d1nb4a_ protein/RNA complex; complexed with n35

   9. Domains for 3fqk:

      1. Domain d3fqka1: 3fqk A:2-562 [175979] Other proteins in same PDB: d3fqka2, d3fqkb2 automated match to d1nb4a_ complexed with 79z

      2. Domain d3fqkb1: 3fqk B:2-562 [175980] Other proteins in same PDB: d3fqka2, d3fqkb2 automated match to d1nb4a_ complexed with 79z

   10. Domains for 3g86:

       1. Domain d3g86a1: 3g86 A:2-562 [176414] Other proteins in same PDB: d3g86a2, d3g86b2 automated match to d1nb4a_ complexed with ni, t18

       2. Domain d3g86b1: 3g86 B:2-562 [176415] Other proteins in same PDB: d3g86a2, d3g86b2 automated match to d1nb4a_ complexed with ni, t18

   11. Domains for 3gyn:

       1. Domain d3gyna_: 3gyn A: [177096] automated match to d1nb4a_ protein/RNA complex; complexed with b42

       2. Domain d3gynb_: 3gyn B: [177097] automated match to d1nb4a_ protein/RNA complex; complexed with b42

   12. Domains for 3h2l:

       1. Domain d3h2la_: 3h2l A: [177153] automated match to d1nb4a_ protein/RNA complex; complexed with yak

       2. Domain d3h2lb_: 3h2l B: [177154] automated match to d1nb4a_ protein/RNA complex; complexed with yak

   13. Domains for 3h98:

       1. Domain d3h98a1: 3h98 A:2-562 [177329] Other proteins in same PDB: d3h98a2, d3h98b2 automated match to d1nb4a_ complexed with b5p, gol

       2. Domain d3h98b1: 3h98 B:2-563 [177330] Other proteins in same PDB: d3h98a2, d3h98b2 automated match to d1nb4a_ complexed with b5p, gol

   14. Domains for 3igv:

       1. Domain d3igva_: 3igv A: [178317] automated match to d1nb4a_ protein/RNA complex; complexed with b80

       2. Domain d3igvb_: 3igv B: [178318] automated match to d1nb4a_ protein/RNA complex; complexed with b80

   15. Domains for 5w2e:

       1. Domain d5w2ea1: 5w2e A:3-564 [337993] Other proteins in same PDB: d5w2ea2, d5w2eb2 automated match to d3q0za_ protein/RNA complex; complexed with 9vy

       2. Domain d5w2eb1: 5w2e B:3-564 [337980] Other proteins in same PDB: d5w2ea2, d5w2eb2 automated match to d3q0za_ protein/RNA complex; complexed with 9vy

   16. Domains for 6mvp:

       1. Domain d6mvpa_: 6mvp A: [373639] automated match to d5pzoa_ complexed with k4s

       2. Domain d6mvpb_: 6mvp B: [373630] automated match to d5pzoa_ complexed with k4s

   17. Domains for 6w4g:

       1. Domain d6w4ga1: 6w4g A:2-562 [396140] Other proteins in same PDB: d6w4ga2, d6w4gb2 automated match to d2ax0a_ complexed with sl4

       2. Domain d6w4gb1: 6w4g B:2-562 [396061] Other proteins in same PDB: d6w4ga2, d6w4gb2 automated match to d2ax0a_ complexed with sl4

10. Hepatitis C virus genotype 1b (isolate con1) [TaxId:333284] [188792] (8 PDB entries)

    1. Domain for 3fql:

       • Domain d3fqla1: 3fql A:2-565 [175981] Other proteins in same PDB: d3fqla2 automated match to d1c2pb_ complexed with 79z, gol

    2. Domains for 5pzk:

       1. Domain d5pzka_: 5pzk A: [334263] automated match to d3q0za_ protein/RNA complex; complexed with 23e, 2n5, gol, pg4, so4

       2. Domain d5pzkb_: 5pzk B: [334242] automated match to d3q0za_ protein/RNA complex; complexed with 23e, 2n5, gol, pg4, so4

    3. Domains for 5pzl:

       1. Domain d5pzla_: 5pzl A: [334248] automated match to d3q0za_ protein/RNA complex; complexed with 23e, 8xv, so4

       2. Domain d5pzlb_: 5pzl B: [334292] automated match to d3q0za_ protein/RNA complex; complexed with 23e, 8xv, so4

    4. Domains for 5pzm:

       1. Domain d5pzma_: 5pzm A: [334251] automated match to d3q0za_ protein/RNA complex; complexed with 23e, 8xs, gol, so4

       2. Domain d5pzmb_: 5pzm B: [334265] automated match to d3q0za_ protein/RNA complex; complexed with 23e, 8xs, gol, so4

    5. Domains for 5pzn:

       1. Domain d5pzna_: 5pzn A: [334238] automated match to d3q0za_ protein/RNA complex; complexed with 23e, 8xp, gol, so4

       2. Domain d5pznb_: 5pzn B: [334245] automated match to d3q0za_ protein/RNA complex; complexed with 23e, 8xp, gol, so4

    6. Domains for 5pzo:

       1. Domain d5pzoa_: 5pzo A: [334240] automated match to d3q0za_ protein/RNA complex; complexed with 23e, 8xm, gol, so4

       2. Domain d5pzob_: 5pzo B: [334257] automated match to d3q0za_ protein/RNA complex; complexed with 23e, 8xm, gol, so4

    7. Domains for 5pzp:

       1. Domain d5pzpa_: 5pzp A: [334324] automated match to d3q0za_ protein/RNA complex; complexed with 23e, 8xj, gol, so4

       2. Domain d5pzpb_: 5pzp B: [334237] automated match to d3q0za_ protein/RNA complex; complexed with 23e, 8xj, gol, so4

    8. Domains for 5twn:

       1. Domain d5twna_: 5twn A: [331358] automated match to d3q0za_ protein/RNA complex; complexed with 23e, 7ng, so4

       2. Domain d5twnb_: 5twn B: [331389] automated match to d3q0za_ protein/RNA complex; complexed with 23e, 7ng, so4

11. Hepatitis C virus genotype 2a (isolate jfh-1) [TaxId:356411] [189047] (4 PDB entries)

    1. Domain for 2xym:

       • Domain d2xyma_: 2xym A: [170486] automated match to d1nb4a_ complexed with po4; mutant

    2. Domains for 3i5k:

       1. Domain d3i5ka1: 3i5k A:1-565 [178099] Other proteins in same PDB: d3i5ka2, d3i5kb2, d3i5kc2, d3i5kd2 automated match to d1nb4a_ complexed with po4

       2. Domain d3i5kb1: 3i5k B:1-565 [178100] Other proteins in same PDB: d3i5ka2, d3i5kb2, d3i5kc2, d3i5kd2 automated match to d1nb4a_ complexed with po4

       3. Domain d3i5kc1: 3i5k C:1-565 [178101] Other proteins in same PDB: d3i5ka2, d3i5kb2, d3i5kc2, d3i5kd2 automated match to d1nb4a_ complexed with po4

       4. Domain d3i5kd1: 3i5k D:1-565 [178102] Other proteins in same PDB: d3i5ka2, d3i5kb2, d3i5kc2, d3i5kd2 automated match to d1nb4a_ complexed with po4

    3. Domain for 4obc:

       • Domain d4obca1: 4obc A:1-553 [259411] Other proteins in same PDB: d4obca2 automated match to d3gnwb_ complexed with cl, gol, mes, pg6; mutant

    4. Domain for 4wt9:

       • Domain d4wt9a1: 4wt9 A:1-551 [269530] Other proteins in same PDB: d4wt9a2 automated match to d3gnwb_ complexed with cl, epe, pg6; mutant

12. Hepatitis C virus isolate hc-j6 [TaxId:11113] [189608] (1 PDB entry)

    • Domain for 2xwh:

      • Domain d2xwha_: 2xwh A: [170439] automated match to d1nb4a_ complexed with 15p, peg

13. Hepatitis C virus isolate hc-j8 [TaxId:11115] [188981] (2 PDB entries)

    1. Domains for 3gsz:

       1. Domain d3gsza_: 3gsz A: [176976] automated match to d1nb4a_

       2. Domain d3gszb_: 3gsz B: [176977] automated match to d1nb4a_

    2. Domains for 3hvo:

       1. Domain d3hvoa_: 3hvo A: [177875] automated match to d1nb4a_ complexed with vgi

       2. Domain d3hvob_: 3hvo B: [177876] automated match to d1nb4a_ complexed with vgi

14. Hepatitis C virus subtype 1a [TaxId:31646] [189338] (1 PDB entry)

    • Domains for 3hkw:

      1. Domain d3hkwa_: 3hkw A: [177657] automated match to d1nb4a_ complexed with gol, ix6, so4

      2. Domain d3hkwb_: 3hkw B: [177658] automated match to d1nb4a_ complexed with gol, ix6, so4

      3. Domain d3hkwc_: 3hkw C: [177659] automated match to d1nb4a_ complexed with gol, ix6, so4

15. Hepatitis C virus subtype 1b [TaxId:31647] [187148] (6 PDB entries)

    1. Domains for 2ijn:

       1. Domain d2ijna2: 2ijn A:3-564 [137478] Other proteins in same PDB: d2ijna3, d2ijnb3 automated match to d1c2pb_ complexed with 221

       2. Domain d2ijnb2: 2ijn B:3-566 [137479] Other proteins in same PDB: d2ijna3, d2ijnb3 automated match to d1c2pb_ complexed with 221

    2. Domains for 3hhk:

       1. Domain d3hhka_: 3hhk A: [177578] automated match to d1nb4a_ protein/RNA complex; complexed with 77z

       2. Domain d3hhkb_: 3hhk B: [177579] automated match to d1nb4a_ protein/RNA complex; complexed with 77z

    3. Domains for 3udl:

       1. Domain d3udla_: 3udl A: [186234] automated match to d1nb4a_ complexed with kli

       2. Domain d3udlb_: 3udl B: [186235] automated match to d1nb4a_ complexed with kli

       3. Domain d3udlc_: 3udl C: [186236] automated match to d1nb4a_ complexed with kli

       4. Domain d3udld_: 3udl D: [186237] automated match to d1nb4a_ complexed with kli

    4. Domains for 5czb:

       1. Domain d5czba1: 5czb A:1-562 [318391] Other proteins in same PDB: d5czba2 automated match to d2ax0a_ complexed with 55w, gol, mes, peg, so4

       2. Domain d5czbb_: 5czb B: [318557] Other proteins in same PDB: d5czba2 automated match to d2ax0a_ complexed with 55w, gol, mes, peg, so4

    5. Domains for 6mvk:

       1. Domain d6mvka_: 6mvk A: [373628] automated match to d2xwha_ complexed with k4j

       2. Domain d6mvkb_: 6mvk B: [373659] automated match to d2xwha_ complexed with k4j

    6. Domains for 6mvq:

       1. Domain d6mvqa_: 6mvq A: [373629] automated match to d2xwha_ complexed with k4m

       2. Domain d6mvqb_: 6mvq B: [373627] automated match to d2xwha_ complexed with k4m

16. Hepatitis C virus [TaxId:11103] [187048] (44 PDB entries)

    1. Domain for 1yuy:

       • Domain d1yuya_: 1yuy A: [162306] automated match to d1nb4a_ complexed with so4

    2. Domain for 1yv2:

       • Domain d1yv2a_: 1yv2 A: [162307] automated match to d1nb4a_ complexed with gol, so4

    3. Domain for 1yvf:

       • Domain d1yvfa_: 1yvf A: [162311] automated match to d1nb4a_ protein/RNA complex; complexed with cl, gol, ph7, po4

    4. Domain for 1yvx:

       • Domain d1yvxa_: 1yvx A: [162313] automated match to d1nb4a_ protein/RNA complex; complexed with ipc, so4

    5. Domain for 1yvz:

       • Domain d1yvza_: 1yvz A: [162314] automated match to d1nb4a_ protein/RNA complex; complexed with jpc, so4

    6. Domain for 1z4u:

       • Domain d1z4ua_: 1z4u A: [162385] automated match to d1nb4a_ protein/RNA complex; complexed with cl, gol, ph9, po4

    7. Domains for 2awz:

       1. Domain d2awza_: 2awz A: [162937] automated match to d1nb4a_ protein/RNA complex; complexed with 5h, so4

       2. Domain d2awzb_: 2awz B: [162938] automated match to d1nb4a_ protein/RNA complex; complexed with 5h, so4

    8. Domains for 2ax0:

       1. Domain d2ax0a_: 2ax0 A: [162939] automated match to d1nb4a_ protein/RNA complex; complexed with 5x, so4

       2. Domain d2ax0b_: 2ax0 B: [162940] automated match to d1nb4a_ protein/RNA complex; complexed with 5x, so4

    9. Domains for 2ax1:

       1. Domain d2ax1a_: 2ax1 A: [162941] automated match to d1nb4a_ protein/RNA complex; complexed with 5ee, so4

       2. Domain d2ax1b_: 2ax1 B: [162942] automated match to d1nb4a_ protein/RNA complex; complexed with 5ee, so4

    10. Domains for 2d3u:

        1. Domain d2d3ua_: 2d3u A: [131232] automated match to d1nb4a_ protein/RNA complex; complexed with cct

        2. Domain d2d3ub_: 2d3u B: [131233] automated match to d1nb4a_ protein/RNA complex; complexed with cct

    11. Domains for 2d3z:

        1. Domain d2d3za_: 2d3z A: [131234] automated match to d1nb4a_ protein/RNA complex; complexed with fih

        2. Domain d2d3zb_: 2d3z B: [131235] automated match to d1nb4a_ protein/RNA complex; complexed with fih

    12. Domains for 2d41:

        1. Domain d2d41a_: 2d41 A: [131236] automated match to d1nb4a_ protein/RNA complex; complexed with snh

        2. Domain d2d41b_: 2d41 B: [131237] automated match to d1nb4a_ protein/RNA complex; complexed with snh

    13. Domains for 2dxs:

        1. Domain d2dxsa_: 2dxs A: [204047] automated match to d3vqsd_ protein/RNA complex; complexed with jtp

        2. Domain d2dxsb_: 2dxs B: [204048] automated match to d3vqsd_ protein/RNA complex; complexed with jtp

    14. Domains for 2gc8:

        1. Domain d2gc8a_: 2gc8 A: [134970] automated match to d1nb4a_ complexed with 885

        2. Domain d2gc8b_: 2gc8 B: [134971] automated match to d1nb4a_ complexed with 885

    15. Domains for 2hwh:

        1. Domain d2hwha2: 2hwh A:3-564 [136822] Other proteins in same PDB: d2hwha3, d2hwhb3 automated match to d1c2pb_ protein/RNA complex; complexed with rna

        2. Domain d2hwhb2: 2hwh B:3-566 [136823] Other proteins in same PDB: d2hwha3, d2hwhb3 automated match to d1c2pb_ protein/RNA complex; complexed with rna

    16. Domains for 2hwi:

        1. Domain d2hwia2: 2hwi A:3-564 [136824] Other proteins in same PDB: d2hwia3, d2hwib3 automated match to d1c2pb_ protein/RNA complex; complexed with vrx

        2. Domain d2hwib2: 2hwi B:3-566 [136825] Other proteins in same PDB: d2hwia3, d2hwib3 automated match to d1c2pb_ protein/RNA complex; complexed with vrx

    17. Domains for 2i1r:

        1. Domain d2i1ra2: 2i1r A:3-564 [136986] Other proteins in same PDB: d2i1ra3, d2i1rb3 automated match to d1c2pb_ protein/RNA complex; complexed with vxr

        2. Domain d2i1rb2: 2i1r B:3-566 [136987] Other proteins in same PDB: d2i1ra3, d2i1rb3 automated match to d1c2pb_ protein/RNA complex; complexed with vxr

    18. Domains for 2jc0:

        1. Domain d2jc0a_: 2jc0 A: [165991] automated match to d1nb4a_ complexed with 699

        2. Domain d2jc0b_: 2jc0 B: [165992] automated match to d1nb4a_ complexed with 699

    19. Domains for 2jc1:

        1. Domain d2jc1a_: 2jc1 A: [165993] automated match to d1nb4a_ complexed with 698

        2. Domain d2jc1b_: 2jc1 B: [165994] automated match to d1nb4a_ complexed with 698

    20. Domains for 2o5d:

        1. Domain d2o5da2: 2o5d A:3-564 [138918] Other proteins in same PDB: d2o5da3, d2o5db3 automated match to d1c2pb_ protein/RNA complex; complexed with vr1

        2. Domain d2o5db2: 2o5d B:3-566 [138919] Other proteins in same PDB: d2o5da3, d2o5db3 automated match to d1c2pb_ protein/RNA complex; complexed with vr1

    21. Domains for 2xhu:

        1. Domain d2xhua_: 2xhu A: [170098] automated match to d1nb4a_ complexed with so4

        2. Domain d2xhub_: 2xhu B: [170099] automated match to d1nb4a_ complexed with so4

    22. Domains for 2xhv:

        1. Domain d2xhva_: 2xhv A: [170100] automated match to d1nb4a_ complexed with mg, so4; mutant

        2. Domain d2xhvb_: 2xhv B: [170101] automated match to d1nb4a_ complexed with mg, so4; mutant

    23. Domain for 2xhw:

        • Domain d2xhwa_: 2xhw A: [170102] automated match to d1nb4a_

    24. Domains for 2xi2:

        1. Domain d2xi2a_: 2xi2 A: [170103] automated match to d1nb4a_ complexed with so4

        2. Domain d2xi2b_: 2xi2 B: [170104] automated match to d1nb4a_ complexed with so4

        3. Domain d2xi2c_: 2xi2 C: [170105] automated match to d1nb4a_ complexed with so4

    25. Domains for 2xi3:

        1. Domain d2xi3a_: 2xi3 A: [170106] automated match to d1nb4a_ complexed with gtp, mg

        2. Domain d2xi3b_: 2xi3 B: [170107] automated match to d1nb4a_ complexed with gtp, mg

    26. Domain for 2xwy:

        • Domain d2xwya_: 2xwy A: [207371] automated match to d4e78a_ complexed with ib8, mn

    27. Domain for 2xxd:

        • Domain d2xxda_: 2xxd A: [170465] automated match to d1nb4a_ complexed with po4

    28. Domains for 3br9:

        1. Domain d3br9a_: 3br9 A: [172796] automated match to d1nb4a_ protein/RNA complex; complexed with dey

        2. Domain d3br9b_: 3br9 B: [172797] automated match to d1nb4a_ protein/RNA complex; complexed with dey

    29. Domains for 3cde:

        1. Domain d3cdea_: 3cde A: [173147] automated match to d1nb4a_ protein/RNA complex; complexed with n3h

        2. Domain d3cdeb_: 3cde B: [173148] automated match to d1nb4a_ protein/RNA complex; complexed with n3h

    30. Domains for 3cwj:

        1. Domain d3cwja_: 3cwj A: [173515] automated match to d1nb4a_ protein/RNA complex; complexed with 321

        2. Domain d3cwjb_: 3cwj B: [173516] automated match to d1nb4a_ protein/RNA complex; complexed with 321

    31. Domains for 3phe:

        1. Domain d3phea_: 3phe A: [183740] automated match to d1nb4a_ protein/RNA complex; complexed with c9a

        2. Domain d3pheb_: 3phe B: [183741] automated match to d1nb4a_ protein/RNA complex; complexed with c9a

        3. Domain d3phec_: 3phe C: [183742] automated match to d1nb4a_ protein/RNA complex; complexed with c9a

        4. Domain d3phed_: 3phe D: [183743] automated match to d1nb4a_ protein/RNA complex; complexed with c9a

    32. Domains for 3vqs:

        1. Domain d3vqsa_: 3vqs A: [194829] automated match to d3gnwb_ protein/RNA complex; complexed with cl, jt1

        2. Domain d3vqsb_: 3vqs B: [194831] automated match to d3gnwb_ protein/RNA complex; complexed with cl, jt1

        3. Domain d3vqsc_: 3vqs C: [194828] automated match to d3gnwb_ protein/RNA complex; complexed with cl, jt1

        4. Domain d3vqsd_: 3vqs D: [194830] automated match to d3gnwb_ protein/RNA complex; complexed with cl, jt1

    33. Domain for 4adp:

        • Domain d4adpa_: 4adp A: [195483] automated match to d3gnwb_ mutant

    34. Domain for 4aep:

        • Domain d4aepa_: 4aep A: [195480] automated match to d3gnwb_ complexed with po4

    35. Domains for 4aex:

        1. Domain d4aexa_: 4aex A: [195482] automated match to d3gnwb_ complexed with po4

        2. Domain d4aexb_: 4aex B: [195481] automated match to d3gnwb_ complexed with po4

    36. Domains for 4txs:

        1. Domain d4txsa_: 4txs A: [272392] automated match to d4mz4a_ complexed with 3aq

        2. Domain d4txsb_: 4txs B: [272394] automated match to d4mz4a_ complexed with 3aq

        3. Domain d4txsc_: 4txs C: [272393] automated match to d4mz4a_ complexed with 3aq

        4. Domain d4txsd_: 4txs D: [272395] automated match to d4mz4a_ complexed with 3aq

    37. Domains for 4ty8:

        1. Domain d4ty8a_: 4ty8 A: [272390] automated match to d4mz4a_ complexed with 3av

        2. Domain d4ty8b_: 4ty8 B: [272388] automated match to d4mz4a_ complexed with 3av

        3. Domain d4ty8c_: 4ty8 C: [272396] automated match to d4mz4a_ complexed with 3av

        4. Domain d4ty8d_: 4ty8 D: [272389] automated match to d4mz4a_ complexed with 3av

    38. Domains for 4ty9:

        1. Domain d4ty9a_: 4ty9 A: [272397] automated match to d4mz4a_ complexed with 3b0

        2. Domain d4ty9b_: 4ty9 B: [272401] automated match to d4mz4a_ complexed with 3b0

        3. Domain d4ty9c_: 4ty9 C: [272402] automated match to d4mz4a_ complexed with 3b0

        4. Domain d4ty9d_: 4ty9 D: [272403] automated match to d4mz4a_ complexed with 3b0

    39. Domains for 4tya:

        1. Domain d4tyaa_: 4tya A: [272391] automated match to d4mz4a_ complexed with 3ae

        2. Domain d4tyab_: 4tya B: [272398] automated match to d4mz4a_ complexed with 3ae

        3. Domain d4tyac_: 4tya C: [272400] automated match to d4mz4a_ complexed with 3ae

        4. Domain d4tyad_: 4tya D: [272399] automated match to d4mz4a_ complexed with 3ae

    40. Domains for 4tyb:

        1. Domain d4tyba_: 4tyb A: [272995] automated match to d3qgda_ complexed with 3b1

        2. Domain d4tybb_: 4tyb B: [272997] automated match to d3qgda_ complexed with 3b1

        3. Domain d4tybc_: 4tyb C: [272996] automated match to d3qgda_ complexed with 3b1

        4. Domain d4tybd_: 4tyb D: [272998] automated match to d3qgda_ complexed with 3b1

    41. Domains for 5trh:

        1. Domain d5trha_: 5trh A: [326834] automated match to d3q0za_ protein/RNA complex; complexed with 23e, 7hl, so4

        2. Domain d5trhb_: 5trh B: [326813] automated match to d3q0za_ protein/RNA complex; complexed with 23e, 7hl, so4

    42. Domains for 5tri:

        1. Domain d5tria_: 5tri A: [326814] automated match to d3q0za_ protein/RNA complex; complexed with 23e, 7hm, so4

        2. Domain d5trib_: 5tri B: [326822] automated match to d3q0za_ protein/RNA complex; complexed with 23e, 7hm, so4

    43. Domains for 5trj:

        1. Domain d5trja_: 5trj A: [326765] automated match to d3q0za_ protein/RNA complex; complexed with 23e, 7ho, so4

        2. Domain d5trjb_: 5trj B: [326797] automated match to d3q0za_ protein/RNA complex; complexed with 23e, 7ho, so4

    44. Domains for 5trk:

        1. Domain d5trka_: 5trk A: [326763] automated match to d3q0za_ protein/RNA complex; complexed with 23e, 7hh, so4

        2. Domain d5trkb_: 5trk B: [326821] automated match to d3q0za_ protein/RNA complex; complexed with 23e, 7hh, so4

17. Hepatitis C virus [TaxId:420174] [189885] (5 PDB entries)

    1. Domains for 2yoj:

       1. Domain d2yoja_: 2yoj A: [228281] automated match to d3upia_ complexed with 8y6, po4

       2. Domain d2yojb_: 2yoj B: [228282] automated match to d3upia_ complexed with 8y6, po4

    2. Domains for 3cso:

       1. Domain d3csoa_: 3cso A: [173436] automated match to d1nb4a_ complexed with xni

       2. Domain d3csob_: 3cso B: [173437] automated match to d1nb4a_ complexed with xni

    3. Domain for 3ska:

       • Domain d3skaa_: 3ska A: [216429] Other proteins in same PDB: d3skab_ automated match to d3upha_ protein/RNA complex; complexed with 053, po4

    4. Domains for 3uph:

       1. Domain d3upha_: 3uph A: [186370] automated match to d1nb4a_ complexed with 0c1, po4

       2. Domain d3uphb_: 3uph B: [186371] automated match to d1nb4a_ complexed with 0c1, po4

    5. Domains for 3upi:

       1. Domain d3upia_: 3upi A: [186372] automated match to d1nb4a_ complexed with 0c2, po4

       2. Domain d3upib_: 3upi B: [186373] automated match to d1nb4a_ complexed with 0c2, po4

18. Human coxsackievirus B3 [TaxId:12072] [193138] (3 PDB entries)

    1. Domains for 4k4x:

       1. Domain d4k4xa1: 4k4x A:1-462 [193139] Other proteins in same PDB: d4k4xa2, d4k4xe2, d4k4xi2, d4k4xm2 automated match to d1ra6a_ protein/RNA complex; complexed with gol, mg

       2. Domain d4k4xe1: 4k4x E:1-462 [202827] Other proteins in same PDB: d4k4xa2, d4k4xe2, d4k4xi2, d4k4xm2 automated match to d4k4xa_ protein/RNA complex; complexed with gol, mg

       3. Domain d4k4xi1: 4k4x I:1-462 [202828] Other proteins in same PDB: d4k4xa2, d4k4xe2, d4k4xi2, d4k4xm2 automated match to d4k4xa_ protein/RNA complex; complexed with gol, mg

       4. Domain d4k4xm1: 4k4x M:1-462 [193140] Other proteins in same PDB: d4k4xa2, d4k4xe2, d4k4xi2, d4k4xm2 automated match to d1ra6a_ protein/RNA complex; complexed with gol, mg

    2. Domains for 4k4y:

       1. Domain d4k4ya1: 4k4y A:1-462 [197201] Other proteins in same PDB: d4k4ya2, d4k4ye2, d4k4yi2, d4k4ym2 automated match to d1ra6a_ protein/RNA complex; complexed with act, dct, gol

       2. Domain d4k4ye1: 4k4y E:1-462 [202829] Other proteins in same PDB: d4k4ya2, d4k4ye2, d4k4yi2, d4k4ym2 automated match to d4k4xa_ protein/RNA complex; complexed with act, dct, gol

       3. Domain d4k4yi1: 4k4y I:1-462 [202830] Other proteins in same PDB: d4k4ya2, d4k4ye2, d4k4yi2, d4k4ym2 automated match to d4k4xa_ protein/RNA complex; complexed with act, dct, gol

       4. Domain d4k4ym1: 4k4y M:1-462 [202831] Other proteins in same PDB: d4k4ya2, d4k4ye2, d4k4yi2, d4k4ym2 automated match to d4k4xa_ protein/RNA complex; complexed with act, dct, gol

    3. Domains for 4k4z:

       1. Domain d4k4za_: 4k4z A: [224165] automated match to d4k4xa_ protein/RNA complex; complexed with mg

       2. Domain d4k4ze_: 4k4z E: [224166] automated match to d4k4xa_ protein/RNA complex; complexed with mg

       3. Domain d4k4zi_: 4k4z I: [224167] automated match to d4k4xa_ protein/RNA complex; complexed with mg

       4. Domain d4k4zm_: 4k4z M: [224168] automated match to d4k4xa_ protein/RNA complex; complexed with mg

19. Human coxsackievirus [TaxId:12072] [188608] (1 PDB entry)

    • Domain for 3ddk:

      • Domain d3ddka_: 3ddk A: [173836] automated match to d1ra6a_ complexed with na, so4

20. Human enterovirus 71 [TaxId:39054] [189988] (4 PDB entries)

    1. Domain for 3n6l:

       • Domain d3n6la_: 3n6l A: [181940] automated match to d1ra6a_ complexed with ni

    2. Domain for 3n6m:

       • Domain d3n6ma_: 3n6m A: [181941] automated match to d1ra6a_ complexed with gtp, ni

    3. Domain for 3n6n:

       • Domain d3n6na_: 3n6n A: [181942] automated match to d1ra6a_ complexed with bup, ni

    4. Domain for 4ika:

       • Domain d4ikaa_: 4ika A: [227711] automated match to d3ol9a_ complexed with ni

21. Human poliovirus 1 [TaxId:12081] [193135] (16 PDB entries)

    1. Domains for 4k4s:

       1. Domain d4k4sa1: 4k4s A:1-461 [224161] Other proteins in same PDB: d4k4sa2, d4k4se2 automated match to d4k4ta_ protein/RNA complex; complexed with gol, zn

       2. Domain d4k4se1: 4k4s E:1-461 [224162] Other proteins in same PDB: d4k4sa2, d4k4se2 automated match to d4k4ta_ protein/RNA complex; complexed with gol, zn

    2. Domains for 4k4t:

       1. Domain d4k4ta1: 4k4t A:1-461 [193136] Other proteins in same PDB: d4k4ta2, d4k4te2 automated match to d1ra6a_ protein/RNA complex; complexed with gol, zn

       2. Domain d4k4te1: 4k4t E:1-461 [202825] Other proteins in same PDB: d4k4ta2, d4k4te2 automated match to d4k4ta_ protein/RNA complex; complexed with gol, zn

    3. Domains for 4k4u:

       1. Domain d4k4ua1: 4k4u A:1-461 [224163] Other proteins in same PDB: d4k4ua2, d4k4ue2 automated match to d4k4va_ protein/RNA complex; complexed with so4

       2. Domain d4k4ue1: 4k4u E:1-461 [224164] Other proteins in same PDB: d4k4ua2, d4k4ue2 automated match to d4k4va_ protein/RNA complex; complexed with so4

    4. Domains for 4k4v:

       1. Domain d4k4va1: 4k4v A:1-461 [193137] Other proteins in same PDB: d4k4va2, d4k4ve2 automated match to d1ra6a_ protein/RNA complex; complexed with so4

       2. Domain d4k4ve1: 4k4v E:1-461 [202826] Other proteins in same PDB: d4k4va2, d4k4ve2 automated match to d4k4va_ protein/RNA complex; complexed with so4

    5. Domains for 4k4w:

       1. Domain d4k4wa1: 4k4w A:1-461 [193141] Other proteins in same PDB: d4k4wa2, d4k4we2 automated match to d1ra6a_ protein/RNA complex

       2. Domain d4k4we1: 4k4w E:1-461 [193144] Other proteins in same PDB: d4k4wa2, d4k4we2 automated match to d1ra6a_ protein/RNA complex

    6. Domain for 4nlo:

       • Domain d4nloa_: 4nlo A: [236241] automated match to d3ddka_ complexed with 1pe, acy, na; mutant

    7. Domain for 4nlp:

       • Domain d4nlpa_: 4nlp A: [236235] automated match to d3ddka_ complexed with 1pe, acy, na; mutant

    8. Domain for 4nlq:

       • Domain d4nlqa_: 4nlq A: [236248] automated match to d3ddka_ complexed with 1pe, acy, na; mutant

    9. Domain for 4nlr:

       • Domain d4nlra_: 4nlr A: [236238] automated match to d3ddka_ complexed with 1pe, acy, na; mutant

    10. Domain for 4nls:

        • Domain d4nlsa_: 4nls A: [236237] automated match to d3ddka_ complexed with 1pe, acy, na; mutant

    11. Domain for 4nlt:

        • Domain d4nlta_: 4nlt A: [236247] automated match to d3ddka_ complexed with 1pe, acy, na; mutant

    12. Domain for 4nlu:

        • Domain d4nlua_: 4nlu A: [236242] automated match to d3ddka_ complexed with 1pe, acy, na; mutant

    13. Domain for 4nlv:

        • Domain d4nlva_: 4nlv A: [236240] automated match to d3ddka_ complexed with 1pe, acy, na; mutant

    14. Domain for 4nlw:

        • Domain d4nlwa_: 4nlw A: [236239] automated match to d3ddka_ complexed with 1pe, acy, na; mutant

    15. Domain for 4nlx:

        • Domain d4nlxa_: 4nlx A: [236249] automated match to d3ddka_ complexed with 1pe, acy, na; mutant

    16. Domain for 4nly:

        • Domain d4nlya_: 4nly A: [236236] automated match to d3ddka_ complexed with 1pe, acy, na; mutant

22. Human rhinovirus a16 [TaxId:31708] [193142] (1 PDB entry)

    • Domain for 4k50:

      • Domain d4k50i_: 4k50 I: [193143] Other proteins in same PDB: d4k50a_, d4k50e_, d4k50m_ automated match to d1tp7a_ protein/RNA complex; complexed with act, gol, so4

23. Murine norovirus 1 [TaxId:223997] [189982] (9 PDB entries)

    1. Domains for 3nah:

       1. Domain d3naha_: 3nah A: [182114] automated match to d1sh0a_ complexed with so4

       2. Domain d3nahb_: 3nah B: [182115] automated match to d1sh0a_ complexed with so4

       3. Domain d3nahc_: 3nah C: [182116] automated match to d1sh0a_ complexed with so4

    2. Domains for 3nai:

       1. Domain d3naia_: 3nai A: [182117] automated match to d1sh0a_ complexed with gol, mg, mn3, so4, urf

       2. Domain d3naib_: 3nai B: [182118] automated match to d1sh0a_ complexed with gol, mg, mn3, so4, urf

       3. Domain d3naic_: 3nai C: [182119] automated match to d1sh0a_ complexed with gol, mg, mn3, so4, urf

    3. Domains for 3qid:

       1. Domain d3qida_: 3qid A: [184400] automated match to d1sh0a_ complexed with gol, mn3, so4

       2. Domain d3qidb_: 3qid B: [184401] automated match to d1sh0a_ complexed with gol, mn3, so4

       3. Domain d3qidc_: 3qid C: [184402] automated match to d1sh0a_ complexed with gol, mn3, so4

    4. Domains for 3sfg:

       1. Domain d3sfga_: 3sfg A: [216381] automated match to d3naha_ protein/RNA complex; complexed with 2tu, gol, mg, so4

       2. Domain d3sfgb_: 3sfg B: [216382] automated match to d3naha_ protein/RNA complex; complexed with 2tu, gol, mg, so4

       3. Domain d3sfgc_: 3sfg C: [216383] automated match to d3naha_ protein/RNA complex; complexed with 2tu, gol, mg, so4

    5. Domains for 3sfu:

       1. Domain d3sfua_: 3sfu A: [216384] automated match to d3naha_ protein/RNA complex; complexed with gol, mg, rbv, so4

       2. Domain d3sfub_: 3sfu B: [216385] automated match to d3naha_ protein/RNA complex; complexed with gol, mg, rbv, so4

       3. Domain d3sfuc_: 3sfu C: [216386] automated match to d3naha_ protein/RNA complex; complexed with gol, mg, rbv, so4

    6. Domains for 3upf:

       1. Domain d3upfa_: 3upf A: [217472] automated match to d1sh0a_ protein/RNA complex; complexed with 0bu, so4

       2. Domain d3upfb_: 3upf B: [217473] automated match to d1sh0a_ protein/RNA complex; complexed with 0bu, so4

       3. Domain d3upfc_: 3upf C: [217474] automated match to d1sh0a_ protein/RNA complex; complexed with 0bu, so4

    7. Domains for 4nru:

       1. Domain d4nrua_: 4nru A: [260332] automated match to d1sh0b_ protein/RNA complex; complexed with 2ng, mg

       2. Domain d4nrub_: 4nru B: [263215] automated match to d1sh0b_ protein/RNA complex; complexed with 2ng, mg

       3. Domain d4nruc_: 4nru C: [263216] automated match to d1sh0b_ protein/RNA complex; complexed with 2ng, mg

       4. Domain d4nrud_: 4nru D: [263217] automated match to d1sh0b_ protein/RNA complex; complexed with 2ng, mg

       5. Domain d4nrue_: 4nru E: [263218] automated match to d1sh0b_ protein/RNA complex; complexed with 2ng, mg

       6. Domain d4nruf_: 4nru F: [263219] automated match to d1sh0b_ protein/RNA complex; complexed with 2ng, mg

    8. Domains for 4o4r:

       1. Domain d4o4ra_: 4o4r A: [263246] automated match to d1sh0b_ protein/RNA complex; complexed with 20v, so4

       2. Domain d4o4rb_: 4o4r B: [263247] automated match to d1sh0b_ protein/RNA complex; complexed with 20v, so4

       3. Domain d4o4rc_: 4o4r C: [260714] automated match to d1sh0b_ protein/RNA complex; complexed with 20v, so4

    9. Domains for 5y3d:

       1. Domain d5y3da_: 5y3d A: [355020] automated match to d1sh0b_

       2. Domain d5y3db_: 5y3d B: [355029] automated match to d1sh0b_

       3. Domain d5y3dc_: 5y3d C: [355007] automated match to d1sh0b_

       4. Domain d5y3dd_: 5y3d D: [355018] automated match to d1sh0b_

       5. Domain d5y3de_: 5y3d E: [355068] automated match to d1sh0b_

       6. Domain d5y3df_: 5y3d F: [355008] automated match to d1sh0b_

24. Murine norovirus [TaxId:223997] [226374] (2 PDB entries)

    1. Domains for 3uqs:

       1. Domain d3uqsa_: 3uqs A: [217492] automated match to d1sh0b_ complexed with so4

       2. Domain d3uqsb_: 3uqs B: [217493] automated match to d1sh0b_ complexed with so4

       3. Domain d3uqsc_: 3uqs C: [217494] automated match to d1sh0b_ complexed with so4

    2. Domains for 3ur0:

       1. Domain d3ur0a_: 3ur0 A: [217497] automated match to d1sh0b_ protein/RNA complex; complexed with so4, svr

       2. Domain d3ur0b_: 3ur0 B: [217498] automated match to d1sh0b_ protein/RNA complex; complexed with so4, svr

       3. Domain d3ur0c_: 3ur0 C: [217499] automated match to d1sh0b_ protein/RNA complex; complexed with so4, svr

25. Norwalk-like virus [TaxId:95340] [260334] (1 PDB entry)

    • Domain for 4nrt:

      • Domain d4nrta_: 4nrt A: [260335] automated match to d1sh0b_ protein/RNA complex; complexed with 2ng

More info for Protein automated matches from e.8.1.4: RNA-dependent RNA-polymerase

Timeline for Protein automated matches from e.8.1.4: RNA-dependent RNA-polymerase:

• Protein automated matches from e.8.1.4: RNA-dependent RNA-polymerase first appeared in SCOPe 2.01
  
• Protein automated matches from e.8.1.4: RNA-dependent RNA-polymerase appears in SCOPe 2.06
  
• Protein automated matches from e.8.1.4: RNA-dependent RNA-polymerase appears in the current release, SCOPe 2.08