SCOPe 2.07: Domain d5y3db_: 5y3d B:

Lineage for d5y3db_ (5y3d B:)

1. Root: SCOPe 2.07

2. Class e: Multi-domain proteins (alpha and beta) [56572] (71 folds)

3. Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
   divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members

4. Superfamily e.8.1: DNA/RNA polymerases [56672] (8 families)
   "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain

5. Family e.8.1.4: RNA-dependent RNA-polymerase [56694] (3 proteins)

6. Protein automated matches [190260] (25 species)
   not a true protein

7. Species Murine norovirus 1 [TaxId:223997] [189982] (9 PDB entries)

8. Domain d5y3db_: 5y3d B: [355029]
   automated match to d1sh0b_

Details for d5y3db_

PDB Entry: 5y3d, 3.14 Å

PDB Description: structural insight into the interaction between rna polymerase and vpg for norovirus replication

PDB Compounds: (B:) RNA-dependent RNA polymerase

SCOPe Domain Sequences for d5y3db_:

Sequence, based on SEQRES records:

>d5y3db_ e.8.1.4 (B:) automated matches {Murine norovirus 1 [TaxId: 223997]}
psgtyaglpiadygdapplstktmfwrtspeklppgawepaylgskdervdgpslqqvmr
dqlkpyseprgllppqeildavcdaienrlentlepqkpwtfkkacesldkntssgypyh
kqkskdwtgsafigdlgdqathannmyemgksmrpiytaalkdelvkpdkiygkikkrll
wgsdlgtmiraarafgpfcdalketcifnpirvgmsmnedgpfifarhanfryhmdadyt
rwdstqqrailkragdimvrlspepdlarvvmddllapslldvgdykivveeglpsgcpc
ttqlnslahwiltlcamvevtrvdpdivmqesefsfygddevvstnleldmvkytmalrr
ygllptradkeegplerrqtlqgisflrraivgdqfgwygrldrasidrqllwtkgpnhq
npfetlpghaqrpsqlmallgeaamhgekyyrtvasrvskeaaqsgiemvvprhrsvlrw
vrfg

Sequence, based on observed residues (ATOM records):

>d5y3db_ e.8.1.4 (B:) automated matches {Murine norovirus 1 [TaxId: 223997]}
psgtyaglpiadygdapplstktmfwrtspeklppgawepaylgskdervdgpslqqvmr
dqlkpyseprgllppqeildavcdaienrlentlepqkpwtfkkacesldkntssgypyh
kqkskdwtgsafigdlgdqathannmyemgksmrpiytaalkdelvkpdkiygkikkrll
wgsdlgtmiraarafgpfcdalketcifnpirvgmsmnedgpfifarhanfryhmdadyt
rwdstqqrailkragdimvrlspepdlarvvmddllapslldvgdykivveeglpsgcpc
ttqlnslahwiltlcamvevtrvdpdivmqesefsfygddevvstnleldmvkytmalrr
ygllptradkeegplerrqtlqgisflrraivgdqfgwygrldrasidrqllwtkgpnhq
npfetlpgsqlmallgeaamhgekyyrtvasrvskeaaqsgiemvvprhrsvlrwvrfg

Timeline for d5y3db_:

• d5y3db_ is new in SCOPe 2.07-stable
  
• d5y3db_ appears in the current release, SCOPe 2.08