SCOPe 2.07: Domain d3upfc_: 3upf C:

Lineage for d3upfc_ (3upf C:)

1. Root: SCOPe 2.07

2. Class e: Multi-domain proteins (alpha and beta) [56572] (71 folds)

3. Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
   divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members

4. Superfamily e.8.1: DNA/RNA polymerases [56672] (8 families)
   "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain

5. Family e.8.1.4: RNA-dependent RNA-polymerase [56694] (3 proteins)

6. Protein automated matches [190260] (25 species)
   not a true protein

7. Species Murine norovirus 1 [TaxId:223997] [189982] (9 PDB entries)

8. Domain d3upfc_: 3upf C: [217474]
   automated match to d1sh0a_
   protein/RNA complex; complexed with 0bu, so4

Details for d3upfc_

PDB Entry: 3upf, 2.6 Å

PDB Description: Crystal structure of murine norovirus RNA-dependent RNA polymerase bound to NF023

PDB Compounds: (C:) RNA-dependent RNA polymerase

SCOPe Domain Sequences for d3upfc_:

Sequence, based on SEQRES records:

>d3upfc_ e.8.1.4 (C:) automated matches {Murine norovirus 1 [TaxId: 223997]}
psgtyaglpiadygdapplstktmfwrtspeklppgawepaylgskdervdgpslqqvmr
dqlkpyseprgllppqeildavcdaienrlentlepqkpwtfkkacesldkntssgypyh
kqkskdwtgsafigdlgdqathannmyemgksmrpiytaalkdelvkpdkiygkikkrll
wgsdlgtmiraarafgpfcdalketcifnpirvgmsmnedgpfifarhanfryhmdadyt
rwdstqqrailkragdimvrlspepdlarvvmddllapslldvgdykivveeglpsgcpc
ttqlnslahwiltlcamvevtrvdpdivmqesefsfygddevvstnleldmvkytmalrr
ygllptradkeegplerrqtlqgisflrraivgdqfgwygrldrasidrqllwtkgpnhq
npfetlpghaqrpsqlmallgeaamhgekyyrtvasrvskeaaqsgiemvvprhrsvlrw
vrfg

Sequence, based on observed residues (ATOM records):

>d3upfc_ e.8.1.4 (C:) automated matches {Murine norovirus 1 [TaxId: 223997]}
psgtyaglpiadygdapplstktmfwrtspeklppgawepaylgskdervdgpslqqvmr
dqlkpyseprgllppqeildavcdaienrlentlepqkpwtfkkacesldkntssgypyh
kqkskdwtgsafigdlgdqathannmyemgksmrpiytaalkdelvkpdkiygkikkrll
wgsdlgtmiraarafgpfcdalketcifnpirvgmsmnedgpfifarhanfryhmdadyt
rwdstqqrailkragdimvrlspepdlarvvmddllapslldvgdykivveeglpsgctt
qlnslahwiltlcamvevtrvdpdivmqesefsfygddevvstnleldmvkytmalrryg
llptradkeegplerrqtlqgisflrraivgdqfgwygrldrasidrqllwtkgpnhqnp
fetlpgqrpsqlmallgeaamhgekyyrtvasrvskevprhrsvlrwvrfg

Timeline for d3upfc_:

• d3upfc_ first appeared in SCOPe 2.03
  
• d3upfc_ appears in SCOPe 2.06
  
• d3upfc_ appears in the current release, SCOPe 2.08