Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2217451Class e: Multi-domain proteins (alpha and beta) [56572] (69 folds)
  3. 2220074Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
    divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
  4. 2220075Superfamily e.8.1: DNA/RNA polymerases [56672] (7 families) (S)
    "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain
  5. 2220913Family e.8.1.4: RNA-dependent RNA-polymerase [56694] (3 protein domains)
  6. 2221226Protein automated matches [190260] (29 species)
    not a true protein

Species:

  1. 2221227Bovine viral diarrhea virus [TaxId:11099] [255087] (1 PDB entry)
  2. 2221229Coxsackievirus b3 [TaxId:103903] [188493] (5 PDB entries)
    1. Domain for 3cdu:
    2. Domain for 3cdw:
    3. Domain for 4wfx:
    4. Domain for 4wfy:
    5. Domain for 4wfz:
  3. 2221235Coxsackievirus b3 [TaxId:12072] [271111] (10 PDB entries)
    1. Domain for 4y2a:
    2. Domain for 4y34:
    3. Domain for 4zp6:
    4. Domain for 4zp7:
    5. Domain for 4zp8:
    6. Domain for 4zp9:
    7. Domain for 4zpa:
    8. Domain for 4zpb:
    9. Domain for 4zpc:
    10. Domain for 4zpd:
  4. 2221238Foot-and-mouth disease virus [TaxId:12120] [272422] (2 PDB entries)
    1. Domain for 4wyl:
    2. Domain for 4wyw:
  5. 2221241Hepatitis B virus [TaxId:10407] [259720] (1 PDB entry)
  6. 2221243Hepatitis c virus (isolate 1) [TaxId:11104] [261697] (1 PDB entry)
  7. 2221245Hepatitis C virus isolate bk [TaxId:11105] [188687] (11 PDB entries)
    1. Domains for 3bsa:
      1. 2221260Domain d3bsaa_: 3bsa A: [172807]
        automated match to d1nb4a_
        protein/RNA complex; complexed with 1pd
      2. 2221261Domain d3bsab_: 3bsa B: [172808]
        automated match to d1nb4a_
        protein/RNA complex; complexed with 1pd
    2. Domains for 3bsc:
      1. 2221264Domain d3bsca_: 3bsc A: [172809]
        automated match to d1nb4a_
        protein/RNA complex; complexed with 2pd
      2. 2221265Domain d3bscb_: 3bsc B: [172810]
        automated match to d1nb4a_
        protein/RNA complex; complexed with 2pd
    3. Domains for 3co9:
      1. 2221252Domain d3co9a_: 3co9 A: [173368]
        automated match to d1nb4a_
        protein/RNA complex; complexed with 3ms
      2. 2221253Domain d3co9b_: 3co9 B: [173369]
        automated match to d1nb4a_
        protein/RNA complex; complexed with 3ms
    4. Domains for 3cvk:
      1. 2221258Domain d3cvka_: 3cvk A: [173501]
        automated match to d1nb4a_
        protein/RNA complex; complexed with n34
      2. 2221259Domain d3cvkb_: 3cvk B: [173502]
        automated match to d1nb4a_
        protein/RNA complex; complexed with n34
    5. Domains for 3d28:
      1. 2221262Domain d3d28a_: 3d28 A: [173632]
        automated match to d1nb4a_
        protein/RNA complex; complexed with b34
      2. 2221263Domain d3d28b_: 3d28 B: [173633]
        automated match to d1nb4a_
        protein/RNA complex; complexed with b34
    6. Domains for 3d5m:
      1. 2221256Domain d3d5ma_: 3d5m A: [173699]
        automated match to d1nb4a_
        protein/RNA complex; complexed with 4ms
      2. 2221257Domain d3d5mb_: 3d5m B: [173700]
        automated match to d1nb4a_
        protein/RNA complex; complexed with 4ms
    7. Domains for 3e51:
      1. 2221250Domain d3e51a_: 3e51 A: [174667]
        automated match to d1nb4a_
        protein/RNA complex; complexed with n35
      2. 2221251Domain d3e51b_: 3e51 B: [174668]
        automated match to d1nb4a_
        protein/RNA complex; complexed with n35
    8. Domains for 3gyn:
      1. 2221254Domain d3gyna_: 3gyn A: [177096]
        automated match to d1nb4a_
        protein/RNA complex; complexed with b42
      2. 2221255Domain d3gynb_: 3gyn B: [177097]
        automated match to d1nb4a_
        protein/RNA complex; complexed with b42
    9. Domains for 3h2l:
      1. 2221248Domain d3h2la_: 3h2l A: [177153]
        automated match to d1nb4a_
        protein/RNA complex; complexed with yak
      2. 2221249Domain d3h2lb_: 3h2l B: [177154]
        automated match to d1nb4a_
        protein/RNA complex; complexed with yak
    10. Domains for 3h98:
      1. 2221246Domain d3h98a1: 3h98 A:2-562 [177329]
        Other proteins in same PDB: d3h98a2, d3h98b2
        automated match to d1nb4a_
        complexed with b5p, gol
      2. 2221247Domain d3h98b1: 3h98 B:2-563 [177330]
        Other proteins in same PDB: d3h98a2, d3h98b2
        automated match to d1nb4a_
        complexed with b5p, gol
    11. Domains for 3igv:
      1. 2221266Domain d3igva_: 3igv A: [178317]
        automated match to d1nb4a_
        protein/RNA complex; complexed with b80
      2. 2221267Domain d3igvb_: 3igv B: [178318]
        automated match to d1nb4a_
        protein/RNA complex; complexed with b80
  8. 2221268Hepatitis c virus isolate hc-j6 [TaxId:11113] [189608] (1 PDB entry)
  9. 2221270Hepatitis c virus isolate hc-j8 [TaxId:11115] [188981] (2 PDB entries)
    1. Domains for 3gsz:
      1. 2221271Domain d3gsza_: 3gsz A: [176976]
        automated match to d1nb4a_
      2. 2221272Domain d3gszb_: 3gsz B: [176977]
        automated match to d1nb4a_
    2. Domains for 3hvo:
      1. 2221273Domain d3hvoa_: 3hvo A: [177875]
        automated match to d1nb4a_
        complexed with vgi
      2. 2221274Domain d3hvob_: 3hvo B: [177876]
        automated match to d1nb4a_
        complexed with vgi
  10. 2221275Hepatitis c virus isolate [TaxId:420174] [188851] (1 PDB entry)
  11. 2221278Hepatitis c virus jfh-1 [TaxId:356411] [189047] (3 PDB entries)
    1. Domains for 3i5k:
      1. 2221279Domain d3i5ka1: 3i5k A:1-565 [178099]
        Other proteins in same PDB: d3i5ka2, d3i5kb2, d3i5kc2, d3i5kd2
        automated match to d1nb4a_
        complexed with po4
      2. 2221280Domain d3i5kb1: 3i5k B:1-565 [178100]
        Other proteins in same PDB: d3i5ka2, d3i5kb2, d3i5kc2, d3i5kd2
        automated match to d1nb4a_
        complexed with po4
      3. 2221281Domain d3i5kc1: 3i5k C:1-565 [178101]
        Other proteins in same PDB: d3i5ka2, d3i5kb2, d3i5kc2, d3i5kd2
        automated match to d1nb4a_
        complexed with po4
      4. 2221282Domain d3i5kd1: 3i5k D:1-565 [178102]
        Other proteins in same PDB: d3i5ka2, d3i5kb2, d3i5kc2, d3i5kd2
        automated match to d1nb4a_
        complexed with po4
    2. Domain for 4obc:
    3. Domain for 4wt9:
  12. 2221285Hepatitis c virus subtype 1a [TaxId:31646] [189338] (1 PDB entry)
  13. 2221289Hepatitis c virus subtype 1b [TaxId:31647] [187148] (4 PDB entries)
    1. Domains for 2ijn:
      1. 2221292Domain d2ijna2: 2ijn A:3-564 [137478]
        Other proteins in same PDB: d2ijna3, d2ijnb3
        automated match to d1c2pb_
        complexed with 221
      2. 2221293Domain d2ijnb2: 2ijn B:3-566 [137479]
        Other proteins in same PDB: d2ijna3, d2ijnb3
        automated match to d1c2pb_
        complexed with 221
    2. Domains for 3hhk:
      1. 2221290Domain d3hhka_: 3hhk A: [177578]
        automated match to d1nb4a_
        protein/RNA complex; complexed with 77z
      2. 2221291Domain d3hhkb_: 3hhk B: [177579]
        automated match to d1nb4a_
        protein/RNA complex; complexed with 77z
    3. Domains for 3udl:
      1. 2221294Domain d3udla_: 3udl A: [186234]
        automated match to d1nb4a_
        complexed with kli
      2. 2221295Domain d3udlb_: 3udl B: [186235]
        automated match to d1nb4a_
        complexed with kli
      3. 2221296Domain d3udlc_: 3udl C: [186236]
        automated match to d1nb4a_
        complexed with kli
      4. 2221297Domain d3udld_: 3udl D: [186237]
        automated match to d1nb4a_
        complexed with kli
    4. Domains for 5czb:
      1. 2275090Domain d5czba1: 5czb A:1-562 [318391]
        Other proteins in same PDB: d5czba2
        automated match to d2ax0a_
        complexed with 55w, gol, mes, peg, so4
      2. 2275256Domain d5czbb_: 5czb B: [318557]
        Other proteins in same PDB: d5czba2
        automated match to d2ax0a_
        complexed with 55w, gol, mes, peg, so4
  14. 2221298Hepatitis C virus [TaxId:11103] [187048] (44 PDB entries)
    1. Domain for 1yuy:
    2. Domain for 1yv2:
    3. Domain for 1yvf:
      • 2221360Domain d1yvfa_: 1yvf A: [162311]
        automated match to d1nb4a_
        protein/RNA complex; complexed with cl, gol, ph7, po4
    4. Domain for 1yvx:
    5. Domain for 1yvz:
    6. Domain for 1z4u:
      • 2221361Domain d1z4ua_: 1z4u A: [162385]
        automated match to d1nb4a_
        protein/RNA complex; complexed with cl, gol, ph9, po4
    7. Domains for 2awz:
      1. 2221331Domain d2awza_: 2awz A: [162937]
        automated match to d1nb4a_
        protein/RNA complex; complexed with 5h, so4
      2. 2221332Domain d2awzb_: 2awz B: [162938]
        automated match to d1nb4a_
        protein/RNA complex; complexed with 5h, so4
    8. Domains for 2ax0:
      1. 2221320Domain d2ax0a_: 2ax0 A: [162939]
        automated match to d1nb4a_
        protein/RNA complex; complexed with 5x, so4
      2. 2221321Domain d2ax0b_: 2ax0 B: [162940]
        automated match to d1nb4a_
        protein/RNA complex; complexed with 5x, so4
    9. Domains for 2ax1:
      1. 2221325Domain d2ax1a_: 2ax1 A: [162941]
        automated match to d1nb4a_
        protein/RNA complex; complexed with 5ee, so4
      2. 2221326Domain d2ax1b_: 2ax1 B: [162942]
        automated match to d1nb4a_
        protein/RNA complex; complexed with 5ee, so4
    10. Domains for 2d3u:
      1. 2221318Domain d2d3ua_: 2d3u A: [131232]
        automated match to d1nb4a_
        protein/RNA complex; complexed with cct
      2. 2221319Domain d2d3ub_: 2d3u B: [131233]
        automated match to d1nb4a_
        protein/RNA complex; complexed with cct
    11. Domains for 2d3z:
      1. 2221307Domain d2d3za_: 2d3z A: [131234]
        automated match to d1nb4a_
        protein/RNA complex; complexed with fih
      2. 2221308Domain d2d3zb_: 2d3z B: [131235]
        automated match to d1nb4a_
        protein/RNA complex; complexed with fih
    12. Domains for 2d41:
      1. 2221329Domain d2d41a_: 2d41 A: [131236]
        automated match to d1nb4a_
        protein/RNA complex; complexed with snh
      2. 2221330Domain d2d41b_: 2d41 B: [131237]
        automated match to d1nb4a_
        protein/RNA complex; complexed with snh
    13. Domains for 2dxs:
      1. 2221341Domain d2dxsa_: 2dxs A: [204047]
        automated match to d3vqsd_
        protein/RNA complex; complexed with jtp
      2. 2221342Domain d2dxsb_: 2dxs B: [204048]
        automated match to d3vqsd_
        protein/RNA complex; complexed with jtp
    14. Domains for 2gc8:
      1. 2221339Domain d2gc8a_: 2gc8 A: [134970]
        automated match to d1nb4a_
        complexed with 885
      2. 2221340Domain d2gc8b_: 2gc8 B: [134971]
        automated match to d1nb4a_
        complexed with 885
    15. Domains for 2hwh:
      1. 2221354Domain d2hwha2: 2hwh A:3-564 [136822]
        Other proteins in same PDB: d2hwha3, d2hwhb3
        automated match to d1c2pb_
        protein/RNA complex; complexed with rna
      2. 2221355Domain d2hwhb2: 2hwh B:3-566 [136823]
        Other proteins in same PDB: d2hwha3, d2hwhb3
        automated match to d1c2pb_
        protein/RNA complex; complexed with rna
    16. Domains for 2hwi:
      1. 2221327Domain d2hwia2: 2hwi A:3-564 [136824]
        Other proteins in same PDB: d2hwia3, d2hwib3
        automated match to d1c2pb_
        protein/RNA complex; complexed with vrx
      2. 2221328Domain d2hwib2: 2hwi B:3-566 [136825]
        Other proteins in same PDB: d2hwia3, d2hwib3
        automated match to d1c2pb_
        protein/RNA complex; complexed with vrx
    17. Domains for 2i1r:
      1. 2221352Domain d2i1ra2: 2i1r A:3-564 [136986]
        Other proteins in same PDB: d2i1ra3, d2i1rb3
        automated match to d1c2pb_
        protein/RNA complex; complexed with vxr
      2. 2221353Domain d2i1rb2: 2i1r B:3-566 [136987]
        Other proteins in same PDB: d2i1ra3, d2i1rb3
        automated match to d1c2pb_
        protein/RNA complex; complexed with vxr
    18. Domains for 2jc0:
      1. 2221333Domain d2jc0a_: 2jc0 A: [165991]
        automated match to d1nb4a_
        complexed with 699
      2. 2221334Domain d2jc0b_: 2jc0 B: [165992]
        automated match to d1nb4a_
        complexed with 699
    19. Domains for 2jc1:
      1. 2221316Domain d2jc1a_: 2jc1 A: [165993]
        automated match to d1nb4a_
        complexed with 698
      2. 2221317Domain d2jc1b_: 2jc1 B: [165994]
        automated match to d1nb4a_
        complexed with 698
    20. Domains for 2o5d:
      1. 2221337Domain d2o5da2: 2o5d A:3-564 [138918]
        Other proteins in same PDB: d2o5da3, d2o5db3
        automated match to d1c2pb_
        protein/RNA complex; complexed with vr1
      2. 2221338Domain d2o5db2: 2o5d B:3-566 [138919]
        Other proteins in same PDB: d2o5da3, d2o5db3
        automated match to d1c2pb_
        protein/RNA complex; complexed with vr1
    21. Domains for 2xhu:
      1. 2221335Domain d2xhua_: 2xhu A: [170098]
        automated match to d1nb4a_
        complexed with so4
      2. 2221336Domain d2xhub_: 2xhu B: [170099]
        automated match to d1nb4a_
        complexed with so4
    22. Domains for 2xhv:
      1. 2221309Domain d2xhva_: 2xhv A: [170100]
        automated match to d1nb4a_
        complexed with mg, so4; mutant
      2. 2221310Domain d2xhvb_: 2xhv B: [170101]
        automated match to d1nb4a_
        complexed with mg, so4; mutant
    23. Domain for 2xhw:
    24. Domains for 2xi2:
      1. 2221301Domain d2xi2a_: 2xi2 A: [170103]
        automated match to d1nb4a_
        complexed with so4
      2. 2221302Domain d2xi2b_: 2xi2 B: [170104]
        automated match to d1nb4a_
        complexed with so4
      3. 2221303Domain d2xi2c_: 2xi2 C: [170105]
        automated match to d1nb4a_
        complexed with so4
    25. Domains for 2xi3:
      1. 2221299Domain d2xi3a_: 2xi3 A: [170106]
        automated match to d1nb4a_
        complexed with gtp, mg
      2. 2221300Domain d2xi3b_: 2xi3 B: [170107]
        automated match to d1nb4a_
        complexed with gtp, mg
    26. Domain for 2xwy:
    27. Domain for 2xxd:
    28. Domains for 3br9:
      1. 2221343Domain d3br9a_: 3br9 A: [172796]
        automated match to d1nb4a_
        protein/RNA complex; complexed with dey
      2. 2221344Domain d3br9b_: 3br9 B: [172797]
        automated match to d1nb4a_
        protein/RNA complex; complexed with dey
    29. Domains for 3cde:
      1. 2221323Domain d3cdea_: 3cde A: [173147]
        automated match to d1nb4a_
        protein/RNA complex; complexed with n3h
      2. 2221324Domain d3cdeb_: 3cde B: [173148]
        automated match to d1nb4a_
        protein/RNA complex; complexed with n3h
    30. Domains for 3cwj:
      1. 2221358Domain d3cwja_: 3cwj A: [173515]
        automated match to d1nb4a_
        protein/RNA complex; complexed with 321
      2. 2221359Domain d3cwjb_: 3cwj B: [173516]
        automated match to d1nb4a_
        protein/RNA complex; complexed with 321
    31. Domains for 3phe:
      1. 2221347Domain d3phea_: 3phe A: [183740]
        automated match to d1nb4a_
        protein/RNA complex; complexed with c9a
      2. 2221348Domain d3pheb_: 3phe B: [183741]
        automated match to d1nb4a_
        protein/RNA complex; complexed with c9a
      3. 2221349Domain d3phec_: 3phe C: [183742]
        automated match to d1nb4a_
        protein/RNA complex; complexed with c9a
      4. 2221350Domain d3phed_: 3phe D: [183743]
        automated match to d1nb4a_
        protein/RNA complex; complexed with c9a
    32. Domains for 3vqs:
      1. 2221311Domain d3vqsa_: 3vqs A: [194829]
        automated match to d3gnwb_
        protein/RNA complex; complexed with cl, jt1
      2. 2221312Domain d3vqsb_: 3vqs B: [194831]
        automated match to d3gnwb_
        protein/RNA complex; complexed with cl, jt1
      3. 2221313Domain d3vqsc_: 3vqs C: [194828]
        automated match to d3gnwb_
        protein/RNA complex; complexed with cl, jt1
      4. 2221314Domain d3vqsd_: 3vqs D: [194830]
        automated match to d3gnwb_
        protein/RNA complex; complexed with cl, jt1
    33. Domain for 4adp:
    34. Domain for 4aep:
    35. Domains for 4aex:
      1. 2221345Domain d4aexa_: 4aex A: [195482]
        automated match to d3gnwb_
        complexed with po4
      2. 2221346Domain d4aexb_: 4aex B: [195481]
        automated match to d3gnwb_
        complexed with po4
    36. Domains for 4txs:
      1. 2221371Domain d4txsa_: 4txs A: [272392]
        automated match to d4mz4a_
        complexed with 3aq
      2. 2221372Domain d4txsb_: 4txs B: [272394]
        automated match to d4mz4a_
        complexed with 3aq
      3. 2221373Domain d4txsc_: 4txs C: [272393]
        automated match to d4mz4a_
        complexed with 3aq
      4. 2221374Domain d4txsd_: 4txs D: [272395]
        automated match to d4mz4a_
        complexed with 3aq
    37. Domains for 4ty8:
      1. 2221367Domain d4ty8a_: 4ty8 A: [272390]
        automated match to d4mz4a_
        complexed with 3av
      2. 2221368Domain d4ty8b_: 4ty8 B: [272388]
        automated match to d4mz4a_
        complexed with 3av
      3. 2221369Domain d4ty8c_: 4ty8 C: [272396]
        automated match to d4mz4a_
        complexed with 3av
      4. 2221370Domain d4ty8d_: 4ty8 D: [272389]
        automated match to d4mz4a_
        complexed with 3av
    38. Domains for 4ty9:
      1. 2221363Domain d4ty9a_: 4ty9 A: [272397]
        automated match to d4mz4a_
        complexed with 3b0
      2. 2221364Domain d4ty9b_: 4ty9 B: [272401]
        automated match to d4mz4a_
        complexed with 3b0
      3. 2221365Domain d4ty9c_: 4ty9 C: [272402]
        automated match to d4mz4a_
        complexed with 3b0
      4. 2221366Domain d4ty9d_: 4ty9 D: [272403]
        automated match to d4mz4a_
        complexed with 3b0
    39. Domains for 4tya:
      1. 2221379Domain d4tyaa_: 4tya A: [272391]
        automated match to d4mz4a_
        complexed with 3ae
      2. 2221380Domain d4tyab_: 4tya B: [272398]
        automated match to d4mz4a_
        complexed with 3ae
      3. 2221381Domain d4tyac_: 4tya C: [272400]
        automated match to d4mz4a_
        complexed with 3ae
      4. 2221382Domain d4tyad_: 4tya D: [272399]
        automated match to d4mz4a_
        complexed with 3ae
    40. Domains for 4tyb:
      1. 2221375Domain d4tyba_: 4tyb A: [272995]
        automated match to d3qgda_
        complexed with 3b1
      2. 2221376Domain d4tybb_: 4tyb B: [272997]
        automated match to d3qgda_
        complexed with 3b1
      3. 2221377Domain d4tybc_: 4tyb C: [272996]
        automated match to d3qgda_
        complexed with 3b1
      4. 2221378Domain d4tybd_: 4tyb D: [272998]
        automated match to d3qgda_
        complexed with 3b1
    41. Domains for 5trh:
      1. 2283512Domain d5trhb_: 5trh B: [326813]
        automated match to d3q0za_
        protein/RNA complex; complexed with 23e, 7hl, so4
      2. 2283533Domain d5trha_: 5trh A: [326834]
        automated match to d3q0za_
        protein/RNA complex; complexed with 23e, 7hl, so4
    42. Domains for 5tri:
      1. 2283513Domain d5tria_: 5tri A: [326814]
        automated match to d3q0za_
        protein/RNA complex; complexed with 23e, 7hm, so4
      2. 2283521Domain d5trib_: 5tri B: [326822]
        automated match to d3q0za_
        protein/RNA complex; complexed with 23e, 7hm, so4
    43. Domains for 5trj:
      1. 2283464Domain d5trja_: 5trj A: [326765]
        automated match to d3q0za_
        protein/RNA complex; complexed with 23e, 7ho, so4
      2. 2283496Domain d5trjb_: 5trj B: [326797]
        automated match to d3q0za_
        protein/RNA complex; complexed with 23e, 7ho, so4
    44. Domains for 5trk:
      1. 2283462Domain d5trka_: 5trk A: [326763]
        automated match to d3q0za_
        protein/RNA complex; complexed with 23e, 7hh, so4
      2. 2283520Domain d5trkb_: 5trk B: [326821]
        automated match to d3q0za_
        protein/RNA complex; complexed with 23e, 7hh, so4
  15. 2221383Hepatitis C virus [TaxId:11105] [188793] (3 PDB entries)
    1. Domain for 2wcx:
    2. Domains for 3fqk:
      1. 2221387Domain d3fqka1: 3fqk A:2-562 [175979]
        Other proteins in same PDB: d3fqka2, d3fqkb2
        automated match to d1nb4a_
        complexed with 79z
      2. 2221388Domain d3fqkb1: 3fqk B:2-562 [175980]
        Other proteins in same PDB: d3fqka2, d3fqkb2
        automated match to d1nb4a_
        complexed with 79z
    3. Domains for 3g86:
      1. 2221385Domain d3g86a1: 3g86 A:2-562 [176414]
        Other proteins in same PDB: d3g86a2, d3g86b2
        automated match to d1nb4a_
        complexed with ni, t18
      2. 2221386Domain d3g86b1: 3g86 B:2-562 [176415]
        Other proteins in same PDB: d3g86a2, d3g86b2
        automated match to d1nb4a_
        complexed with ni, t18
  16. 2221389Hepatitis C virus [TaxId:333284] [188792] (1 PDB entry)
  17. 2221391Hepatitis C virus [TaxId:356411] [189609] (1 PDB entry)
  18. 2221393Hepatitis C virus [TaxId:420174] [189885] (4 PDB entries)
    1. Domains for 2yoj:
      1. 2221399Domain d2yoja_: 2yoj A: [228281]
        automated match to d3upia_
        complexed with 8y6, po4
      2. 2221400Domain d2yojb_: 2yoj B: [228282]
        automated match to d3upia_
        complexed with 8y6, po4
    2. Domain for 3ska:
    3. Domains for 3uph:
      1. 2221395Domain d3upha_: 3uph A: [186370]
        automated match to d1nb4a_
        complexed with 0c1, po4
      2. 2221396Domain d3uphb_: 3uph B: [186371]
        automated match to d1nb4a_
        complexed with 0c1, po4
    4. Domains for 3upi:
      1. 2221397Domain d3upia_: 3upi A: [186372]
        automated match to d1nb4a_
        complexed with 0c2, po4
      2. 2221398Domain d3upib_: 3upi B: [186373]
        automated match to d1nb4a_
        complexed with 0c2, po4
  19. 2221401Human coxsackievirus B3 [TaxId:12072] [193138] (3 PDB entries)
    1. Domains for 4k4x:
      1. 2221406Domain d4k4xa1: 4k4x A:1-462 [193139]
        Other proteins in same PDB: d4k4xa2, d4k4xe2, d4k4xi2, d4k4xm2
        automated match to d1ra6a_
        protein/RNA complex; complexed with gol, mg
      2. 2221407Domain d4k4xe1: 4k4x E:1-462 [202827]
        Other proteins in same PDB: d4k4xa2, d4k4xe2, d4k4xi2, d4k4xm2
        automated match to d4k4xa_
        protein/RNA complex; complexed with gol, mg
      3. 2221408Domain d4k4xi1: 4k4x I:1-462 [202828]
        Other proteins in same PDB: d4k4xa2, d4k4xe2, d4k4xi2, d4k4xm2
        automated match to d4k4xa_
        protein/RNA complex; complexed with gol, mg
      4. 2221409Domain d4k4xm1: 4k4x M:1-462 [193140]
        Other proteins in same PDB: d4k4xa2, d4k4xe2, d4k4xi2, d4k4xm2
        automated match to d1ra6a_
        protein/RNA complex; complexed with gol, mg
    2. Domains for 4k4y:
      1. 2221410Domain d4k4ya1: 4k4y A:1-462 [197201]
        Other proteins in same PDB: d4k4ya2, d4k4ye2, d4k4yi2, d4k4ym2
        automated match to d1ra6a_
        protein/RNA complex; complexed with act, dct, gol
      2. 2221411Domain d4k4ye1: 4k4y E:1-462 [202829]
        Other proteins in same PDB: d4k4ya2, d4k4ye2, d4k4yi2, d4k4ym2
        automated match to d4k4xa_
        protein/RNA complex; complexed with act, dct, gol
      3. 2221412Domain d4k4yi1: 4k4y I:1-462 [202830]
        Other proteins in same PDB: d4k4ya2, d4k4ye2, d4k4yi2, d4k4ym2
        automated match to d4k4xa_
        protein/RNA complex; complexed with act, dct, gol
      4. 2221413Domain d4k4ym1: 4k4y M:1-462 [202831]
        Other proteins in same PDB: d4k4ya2, d4k4ye2, d4k4yi2, d4k4ym2
        automated match to d4k4xa_
        protein/RNA complex; complexed with act, dct, gol
    3. Domains for 4k4z:
      1. 2221402Domain d4k4za_: 4k4z A: [224165]
        automated match to d4k4xa_
        protein/RNA complex; complexed with mg
      2. 2221403Domain d4k4ze_: 4k4z E: [224166]
        automated match to d4k4xa_
        protein/RNA complex; complexed with mg
      3. 2221404Domain d4k4zi_: 4k4z I: [224167]
        automated match to d4k4xa_
        protein/RNA complex; complexed with mg
      4. 2221405Domain d4k4zm_: 4k4z M: [224168]
        automated match to d4k4xa_
        protein/RNA complex; complexed with mg
  20. 2221414Human coxsackievirus [TaxId:12072] [188608] (1 PDB entry)
  21. 2221416Human enterovirus 71 [TaxId:39054] [189988] (4 PDB entries)
    1. Domain for 3n6l:
    2. Domain for 3n6m:
    3. Domain for 3n6n:
    4. Domain for 4ika:
  22. 2221421Human poliovirus 1 [TaxId:12081] [193135] (16 PDB entries)
    1. Domains for 4k4s:
      1. 2221423Domain d4k4sa1: 4k4s A:1-461 [224161]
        Other proteins in same PDB: d4k4sa2, d4k4se2
        automated match to d4k4ta_
        protein/RNA complex; complexed with gol, zn
      2. 2221424Domain d4k4se1: 4k4s E:1-461 [224162]
        Other proteins in same PDB: d4k4sa2, d4k4se2
        automated match to d4k4ta_
        protein/RNA complex; complexed with gol, zn
    2. Domains for 4k4t:
      1. 2221435Domain d4k4ta1: 4k4t A:1-461 [193136]
        Other proteins in same PDB: d4k4ta2, d4k4te2
        automated match to d1ra6a_
        protein/RNA complex; complexed with gol, zn
      2. 2221436Domain d4k4te1: 4k4t E:1-461 [202825]
        Other proteins in same PDB: d4k4ta2, d4k4te2
        automated match to d4k4ta_
        protein/RNA complex; complexed with gol, zn
    3. Domains for 4k4u:
      1. 2221439Domain d4k4ua1: 4k4u A:1-461 [224163]
        Other proteins in same PDB: d4k4ua2, d4k4ue2
        automated match to d4k4va_
        protein/RNA complex; complexed with so4
      2. 2221440Domain d4k4ue1: 4k4u E:1-461 [224164]
        Other proteins in same PDB: d4k4ua2, d4k4ue2
        automated match to d4k4va_
        protein/RNA complex; complexed with so4
    4. Domains for 4k4v:
      1. 2221441Domain d4k4va1: 4k4v A:1-461 [193137]
        Other proteins in same PDB: d4k4va2, d4k4ve2
        automated match to d1ra6a_
        protein/RNA complex; complexed with so4
      2. 2221442Domain d4k4ve1: 4k4v E:1-461 [202826]
        Other proteins in same PDB: d4k4va2, d4k4ve2
        automated match to d4k4va_
        protein/RNA complex; complexed with so4
    5. Domains for 4k4w:
      1. 2221433Domain d4k4wa1: 4k4w A:1-461 [193141]
        Other proteins in same PDB: d4k4wa2, d4k4we2
        automated match to d1ra6a_
        protein/RNA complex
      2. 2221434Domain d4k4we1: 4k4w E:1-461 [193144]
        Other proteins in same PDB: d4k4wa2, d4k4we2
        automated match to d1ra6a_
        protein/RNA complex
    6. Domain for 4nlo:
    7. Domain for 4nlp:
    8. Domain for 4nlq:
    9. Domain for 4nlr:
    10. Domain for 4nls:
    11. Domain for 4nlt:
    12. Domain for 4nlu:
    13. Domain for 4nlv:
    14. Domain for 4nlw:
    15. Domain for 4nlx:
    16. Domain for 4nly:
  23. 2221443Human rhinovirus a16 [TaxId:31708] [193142] (1 PDB entry)
  24. 2221445Murine norovirus 1 [TaxId:223997] [189982] (8 PDB entries)
    1. Domains for 3nah:
      1. 2221470Domain d3naha_: 3nah A: [182114]
        automated match to d1sh0a_
        complexed with so4
      2. 2221471Domain d3nahb_: 3nah B: [182115]
        automated match to d1sh0a_
        complexed with so4
      3. 2221472Domain d3nahc_: 3nah C: [182116]
        automated match to d1sh0a_
        complexed with so4
    2. Domains for 3nai:
      1. 2221455Domain d3naia_: 3nai A: [182117]
        automated match to d1sh0a_
        complexed with gol, mg, mn3, so4, urf
      2. 2221456Domain d3naib_: 3nai B: [182118]
        automated match to d1sh0a_
        complexed with gol, mg, mn3, so4, urf
      3. 2221457Domain d3naic_: 3nai C: [182119]
        automated match to d1sh0a_
        complexed with gol, mg, mn3, so4, urf
    3. Domains for 3qid:
      1. 2221467Domain d3qida_: 3qid A: [184400]
        automated match to d1sh0a_
        complexed with gol, mn3, so4
      2. 2221468Domain d3qidb_: 3qid B: [184401]
        automated match to d1sh0a_
        complexed with gol, mn3, so4
      3. 2221469Domain d3qidc_: 3qid C: [184402]
        automated match to d1sh0a_
        complexed with gol, mn3, so4
    4. Domains for 3sfg:
      1. 2221446Domain d3sfga_: 3sfg A: [216381]
        automated match to d3naha_
        protein/RNA complex; complexed with 2tu, gol, mg, so4
      2. 2221447Domain d3sfgb_: 3sfg B: [216382]
        automated match to d3naha_
        protein/RNA complex; complexed with 2tu, gol, mg, so4
      3. 2221448Domain d3sfgc_: 3sfg C: [216383]
        automated match to d3naha_
        protein/RNA complex; complexed with 2tu, gol, mg, so4
    5. Domains for 3sfu:
      1. 2221449Domain d3sfua_: 3sfu A: [216384]
        automated match to d3naha_
        protein/RNA complex; complexed with gol, mg, rbv, so4
      2. 2221450Domain d3sfub_: 3sfu B: [216385]
        automated match to d3naha_
        protein/RNA complex; complexed with gol, mg, rbv, so4
      3. 2221451Domain d3sfuc_: 3sfu C: [216386]
        automated match to d3naha_
        protein/RNA complex; complexed with gol, mg, rbv, so4
    6. Domains for 3upf:
      1. 2221452Domain d3upfa_: 3upf A: [217472]
        automated match to d1sh0a_
        protein/RNA complex; complexed with 0bu, so4
      2. 2221453Domain d3upfb_: 3upf B: [217473]
        automated match to d1sh0a_
        protein/RNA complex; complexed with 0bu, so4
      3. 2221454Domain d3upfc_: 3upf C: [217474]
        automated match to d1sh0a_
        protein/RNA complex; complexed with 0bu, so4
    7. Domains for 4nru:
      1. 2221458Domain d4nrua_: 4nru A: [260332]
        automated match to d1sh0b_
        protein/RNA complex; complexed with 2ng, mg
      2. 2221459Domain d4nrub_: 4nru B: [263215]
        automated match to d1sh0b_
        protein/RNA complex; complexed with 2ng, mg
      3. 2221460Domain d4nruc_: 4nru C: [263216]
        automated match to d1sh0b_
        protein/RNA complex; complexed with 2ng, mg
      4. 2221461Domain d4nrud_: 4nru D: [263217]
        automated match to d1sh0b_
        protein/RNA complex; complexed with 2ng, mg
      5. 2221462Domain d4nrue_: 4nru E: [263218]
        automated match to d1sh0b_
        protein/RNA complex; complexed with 2ng, mg
      6. 2221463Domain d4nruf_: 4nru F: [263219]
        automated match to d1sh0b_
        protein/RNA complex; complexed with 2ng, mg
    8. Domains for 4o4r:
      1. 2221464Domain d4o4ra_: 4o4r A: [263246]
        automated match to d1sh0b_
        protein/RNA complex; complexed with 20v, so4
      2. 2221465Domain d4o4rb_: 4o4r B: [263247]
        automated match to d1sh0b_
        protein/RNA complex; complexed with 20v, so4
      3. 2221466Domain d4o4rc_: 4o4r C: [260714]
        automated match to d1sh0b_
        protein/RNA complex; complexed with 20v, so4
  25. 2221473Murine norovirus [TaxId:223997] [226374] (2 PDB entries)
    1. Domains for 3uqs:
      1. 2221474Domain d3uqsa_: 3uqs A: [217492]
        automated match to d1sh0b_
        complexed with so4
      2. 2221475Domain d3uqsb_: 3uqs B: [217493]
        automated match to d1sh0b_
        complexed with so4
      3. 2221476Domain d3uqsc_: 3uqs C: [217494]
        automated match to d1sh0b_
        complexed with so4
    2. Domains for 3ur0:
      1. 2221477Domain d3ur0a_: 3ur0 A: [217497]
        automated match to d1sh0b_
        protein/RNA complex; complexed with so4, svr
      2. 2221478Domain d3ur0b_: 3ur0 B: [217498]
        automated match to d1sh0b_
        protein/RNA complex; complexed with so4, svr
      3. 2221479Domain d3ur0c_: 3ur0 C: [217499]
        automated match to d1sh0b_
        protein/RNA complex; complexed with so4, svr
  26. 2221480Norwalk-like virus [TaxId:95340] [260334] (1 PDB entry)
  27. 2288056Hepatitis c virus genotype 1b (isolate con1) [TaxId:333284] [331357] (7 PDB entries)
    1. Domains for 5pzk:
      1. 2290941Domain d5pzkb_: 5pzk B: [334242]
        automated match to d3q0za_
        protein/RNA complex; complexed with 23e, 2n5, gol, pg4, so4
      2. 2290962Domain d5pzka_: 5pzk A: [334263]
        automated match to d3q0za_
        protein/RNA complex; complexed with 23e, 2n5, gol, pg4, so4
    2. Domains for 5pzl:
      1. 2290947Domain d5pzla_: 5pzl A: [334248]
        automated match to d3q0za_
        protein/RNA complex; complexed with 23e, 8xv, so4
      2. 2290991Domain d5pzlb_: 5pzl B: [334292]
        automated match to d3q0za_
        protein/RNA complex; complexed with 23e, 8xv, so4
    3. Domains for 5pzm:
      1. 2290950Domain d5pzma_: 5pzm A: [334251]
        automated match to d3q0za_
        protein/RNA complex; complexed with 23e, 8xs, gol, so4
      2. 2290964Domain d5pzmb_: 5pzm B: [334265]
        automated match to d3q0za_
        protein/RNA complex; complexed with 23e, 8xs, gol, so4
    4. Domains for 5pzn:
      1. 2290937Domain d5pzna_: 5pzn A: [334238]
        automated match to d3q0za_
        protein/RNA complex; complexed with 23e, 8xp, gol, so4
      2. 2290944Domain d5pznb_: 5pzn B: [334245]
        automated match to d3q0za_
        protein/RNA complex; complexed with 23e, 8xp, gol, so4
    5. Domains for 5pzo:
      1. 2290939Domain d5pzoa_: 5pzo A: [334240]
        automated match to d3q0za_
        protein/RNA complex; complexed with 23e, 8xm, gol, so4
      2. 2290956Domain d5pzob_: 5pzo B: [334257]
        automated match to d3q0za_
        protein/RNA complex; complexed with 23e, 8xm, gol, so4
    6. Domains for 5pzp:
      1. 2290936Domain d5pzpb_: 5pzp B: [334237]
        automated match to d3q0za_
        protein/RNA complex; complexed with 23e, 8xj, gol, so4
      2. 2291023Domain d5pzpa_: 5pzp A: [334324]
        automated match to d3q0za_
        protein/RNA complex; complexed with 23e, 8xj, gol, so4
    7. Domains for 5twn:
      1. 2288057Domain d5twna_: 5twn A: [331358]
        automated match to d3q0za_
        protein/RNA complex; complexed with 23e, 7ng, so4
      2. 2288088Domain d5twnb_: 5twn B: [331389]
        automated match to d3q0za_
        protein/RNA complex; complexed with 23e, 7ng, so4
  28. 2293070Enterovirus d68 [TaxId:42789] [336371] (1 PDB entry)
  29. 2294678Hepatitis c virus genotype 1b (isolate bk) [TaxId:11105] [337979] (1 PDB entry)

More info for Protein automated matches from e.8.1.4: RNA-dependent RNA-polymerase

Timeline for Protein automated matches from e.8.1.4: RNA-dependent RNA-polymerase: