SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2217451Class e: Multi-domain proteins (alpha and beta) [56572] (69 folds)
  3. 2220074Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
    divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
  4. 2220075Superfamily e.8.1: DNA/RNA polymerases [56672] (7 families) (S)
    "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain
  5. 2220913Family e.8.1.4: RNA-dependent RNA-polymerase [56694] (3 protein domains)
  6. 2221226Protein automated matches [190260] (28 species)
    not a true protein

Species:

  1. 2221227Bovine viral diarrhea virus [TaxId:11099] [255087] (1 PDB entry)
  2. 2221229Coxsackievirus b3 [TaxId:103903] [188493] (5 PDB entries)
    1. Domain for 3cdu:
    2. Domain for 3cdw:
    3. Domain for 4wfx:
    4. Domain for 4wfy:
    5. Domain for 4wfz:
  3. 2221235Coxsackievirus b3 [TaxId:12072] [271111] (10 PDB entries)
    1. Domain for 4y2a:
    2. Domain for 4y34:
    3. Domain for 4zp6:
    4. Domain for 4zp7:
    5. Domain for 4zp8:
    6. Domain for 4zp9:
    7. Domain for 4zpa:
    8. Domain for 4zpb:
    9. Domain for 4zpc:
    10. Domain for 4zpd:
  4. 2221238Foot-and-mouth disease virus [TaxId:12120] [272422] (2 PDB entries)
    1. Domain for 4wyl:
    2. Domain for 4wyw:
  5. 2221241Hepatitis B virus [TaxId:10407] [259720] (1 PDB entry)
  6. 2221243Hepatitis c virus (isolate 1) [TaxId:11104] [261697] (1 PDB entry)
  7. 2221245Hepatitis C virus isolate bk [TaxId:11105] [188687] (11 PDB entries)
    1. Domains for 3bsa:
      1. 2221260Domain d3bsaa_: 3bsa A: [172807]
        automated match to d1nb4a_
        protein/RNA complex; complexed with 1pd
      2. 2221261Domain d3bsab_: 3bsa B: [172808]
        automated match to d1nb4a_
        protein/RNA complex; complexed with 1pd
    2. Domains for 3bsc:
      1. 2221264Domain d3bsca_: 3bsc A: [172809]
        automated match to d1nb4a_
        protein/RNA complex; complexed with 2pd
      2. 2221265Domain d3bscb_: 3bsc B: [172810]
        automated match to d1nb4a_
        protein/RNA complex; complexed with 2pd
    3. Domains for 3co9:
      1. 2221252Domain d3co9a_: 3co9 A: [173368]
        automated match to d1nb4a_
        protein/RNA complex; complexed with 3ms
      2. 2221253Domain d3co9b_: 3co9 B: [173369]
        automated match to d1nb4a_
        protein/RNA complex; complexed with 3ms
    4. Domains for 3cvk:
      1. 2221258Domain d3cvka_: 3cvk A: [173501]
        automated match to d1nb4a_
        protein/RNA complex; complexed with n34
      2. 2221259Domain d3cvkb_: 3cvk B: [173502]
        automated match to d1nb4a_
        protein/RNA complex; complexed with n34
    5. Domains for 3d28:
      1. 2221262Domain d3d28a_: 3d28 A: [173632]
        automated match to d1nb4a_
        protein/RNA complex; complexed with b34
      2. 2221263Domain d3d28b_: 3d28 B: [173633]
        automated match to d1nb4a_
        protein/RNA complex; complexed with b34
    6. Domains for 3d5m:
      1. 2221256Domain d3d5ma_: 3d5m A: [173699]
        automated match to d1nb4a_
        protein/RNA complex; complexed with 4ms
      2. 2221257Domain d3d5mb_: 3d5m B: [173700]
        automated match to d1nb4a_
        protein/RNA complex; complexed with 4ms
    7. Domains for 3e51:
      1. 2221250Domain d3e51a_: 3e51 A: [174667]
        automated match to d1nb4a_
        protein/RNA complex; complexed with n35
      2. 2221251Domain d3e51b_: 3e51 B: [174668]
        automated match to d1nb4a_
        protein/RNA complex; complexed with n35
    8. Domains for 3gyn:
      1. 2221254Domain d3gyna_: 3gyn A: [177096]
        automated match to d1nb4a_
        protein/RNA complex; complexed with b42
      2. 2221255Domain d3gynb_: 3gyn B: [177097]
        automated match to d1nb4a_
        protein/RNA complex; complexed with b42
    9. Domains for 3h2l:
      1. 2221248Domain d3h2la_: 3h2l A: [177153]
        automated match to d1nb4a_
        protein/RNA complex; complexed with yak
      2. 2221249Domain d3h2lb_: 3h2l B: [177154]
        automated match to d1nb4a_
        protein/RNA complex; complexed with yak
    10. Domains for 3h98:
      1. 2221246Domain d3h98a1: 3h98 A:2-562 [177329]
        Other proteins in same PDB: d3h98a2, d3h98b2
        automated match to d1nb4a_
        complexed with b5p, gol
      2. 2221247Domain d3h98b1: 3h98 B:2-563 [177330]
        Other proteins in same PDB: d3h98a2, d3h98b2
        automated match to d1nb4a_
        complexed with b5p, gol
    11. Domains for 3igv:
      1. 2221266Domain d3igva_: 3igv A: [178317]
        automated match to d1nb4a_
        protein/RNA complex; complexed with b80
      2. 2221267Domain d3igvb_: 3igv B: [178318]
        automated match to d1nb4a_
        protein/RNA complex; complexed with b80
  8. 2221268Hepatitis c virus isolate hc-j6 [TaxId:11113] [189608] (1 PDB entry)
  9. 2221270Hepatitis c virus isolate hc-j8 [TaxId:11115] [188981] (2 PDB entries)
    1. Domains for 3gsz:
      1. 2221271Domain d3gsza_: 3gsz A: [176976]
        automated match to d1nb4a_
      2. 2221272Domain d3gszb_: 3gsz B: [176977]
        automated match to d1nb4a_
    2. Domains for 3hvo:
      1. 2221273Domain d3hvoa_: 3hvo A: [177875]
        automated match to d1nb4a_
        complexed with vgi
      2. 2221274Domain d3hvob_: 3hvo B: [177876]
        automated match to d1nb4a_
        complexed with vgi
  10. 2221275Hepatitis c virus isolate [TaxId:420174] [188851] (1 PDB entry)
  11. 2221278Hepatitis c virus jfh-1 [TaxId:356411] [189047] (3 PDB entries)
    1. Domains for 3i5k:
      1. 2221279Domain d3i5ka1: 3i5k A:1-565 [178099]
        Other proteins in same PDB: d3i5ka2, d3i5kb2, d3i5kc2, d3i5kd2
        automated match to d1nb4a_
        complexed with po4
      2. 2221280Domain d3i5kb1: 3i5k B:1-565 [178100]
        Other proteins in same PDB: d3i5ka2, d3i5kb2, d3i5kc2, d3i5kd2
        automated match to d1nb4a_
        complexed with po4
      3. 2221281Domain d3i5kc1: 3i5k C:1-565 [178101]
        Other proteins in same PDB: d3i5ka2, d3i5kb2, d3i5kc2, d3i5kd2
        automated match to d1nb4a_
        complexed with po4
      4. 2221282Domain d3i5kd1: 3i5k D:1-565 [178102]
        Other proteins in same PDB: d3i5ka2, d3i5kb2, d3i5kc2, d3i5kd2
        automated match to d1nb4a_
        complexed with po4
    2. Domain for 4obc:
    3. Domain for 4wt9:
  12. 2221285Hepatitis c virus subtype 1a [TaxId:31646] [189338] (1 PDB entry)
  13. 2221289Hepatitis c virus subtype 1b [TaxId:31647] [187148] (4 PDB entries)
    1. Domains for 2ijn:
      1. 2221292Domain d2ijna2: 2ijn A:3-564 [137478]
        Other proteins in same PDB: d2ijna3, d2ijnb3
        automated match to d1c2pb_
        complexed with 221
      2. 2221293Domain d2ijnb2: 2ijn B:3-566 [137479]
        Other proteins in same PDB: d2ijna3, d2ijnb3
        automated match to d1c2pb_
        complexed with 221
    2. Domains for 3hhk:
      1. 2221290Domain d3hhka_: 3hhk A: [177578]
        automated match to d1nb4a_
        protein/RNA complex; complexed with 77z
      2. 2221291Domain d3hhkb_: 3hhk B: [177579]
        automated match to d1nb4a_
        protein/RNA complex; complexed with 77z
    3. Domains for 3udl:
      1. 2221294Domain d3udla_: 3udl A: [186234]
        automated match to d1nb4a_
        complexed with kli
      2. 2221295Domain d3udlb_: 3udl B: [186235]
        automated match to d1nb4a_
        complexed with kli
      3. 2221296Domain d3udlc_: 3udl C: [186236]
        automated match to d1nb4a_
        complexed with kli
      4. 2221297Domain d3udld_: 3udl D: [186237]
        automated match to d1nb4a_
        complexed with kli
    4. Domains for 5czb:
      1. 2275090Domain d5czba1: 5czb A:1-562 [318391]
        Other proteins in same PDB: d5czba2
        automated match to d2ax0a_
        complexed with 55w, gol, mes, peg, so4
      2. 2275256Domain d5czbb_: 5czb B: [318557]
        Other proteins in same PDB: d5czba2
        automated match to d2ax0a_
        complexed with 55w, gol, mes, peg, so4
  14. 2221298Hepatitis C virus [TaxId:11103] [187048] (44 PDB entries)
    1. Domain for 1yuy:
    2. Domain for 1yv2:
    3. Domain for 1yvf:
      • 2221360Domain d1yvfa_: 1yvf A: [162311]
        automated match to d1nb4a_
        protein/RNA complex; complexed with cl, gol, ph7, po4
    4. Domain for 1yvx:
    5. Domain for 1yvz:
    6. Domain for 1z4u:
      • 2221361Domain d1z4ua_: 1z4u A: [162385]
        automated match to d1nb4a_
        protein/RNA complex; complexed with cl, gol, ph9, po4
    7. Domains for 2awz:
      1. 2221331Domain d2awza_: 2awz A: [162937]
        automated match to d1nb4a_
        protein/RNA complex; complexed with 5h, so4
      2. 2221332Domain d2awzb_: 2awz B: [162938]
        automated match to d1nb4a_
        protein/RNA complex; complexed with 5h, so4
    8. Domains for 2ax0:
      1. 2221320Domain d2ax0a_: 2ax0 A: [162939]
        automated match to d1nb4a_
        protein/RNA complex; complexed with 5x, so4
      2. 2221321Domain d2ax0b_: 2ax0 B: [162940]
        automated match to d1nb4a_
        protein/RNA complex; complexed with 5x, so4
    9. Domains for 2ax1:
      1. 2221325Domain d2ax1a_: 2ax1 A: [162941]
        automated match to d1nb4a_
        protein/RNA complex; complexed with 5ee, so4
      2. 2221326Domain d2ax1b_: 2ax1 B: [162942]
        automated match to d1nb4a_
        protein/RNA complex; complexed with 5ee, so4
    10. Domains for 2d3u:
      1. 2221318Domain d2d3ua_: 2d3u A: [131232]
        automated match to d1nb4a_
        protein/RNA complex; complexed with cct
      2. 2221319Domain d2d3ub_: 2d3u B: [131233]
        automated match to d1nb4a_
        protein/RNA complex; complexed with cct
    11. Domains for 2d3z:
      1. 2221307Domain d2d3za_: 2d3z A: [131234]
        automated match to d1nb4a_
        protein/RNA complex; complexed with fih
      2. 2221308Domain d2d3zb_: 2d3z B: [131235]
        automated match to d1nb4a_
        protein/RNA complex; complexed with fih
    12. Domains for 2d41:
      1. 2221329Domain d2d41a_: 2d41 A: [131236]
        automated match to d1nb4a_
        protein/RNA complex; complexed with snh
      2. 2221330Domain d2d41b_: 2d41 B: [131237]
        automated match to d1nb4a_
        protein/RNA complex; complexed with snh
    13. Domains for 2dxs:
      1. 2221341Domain d2dxsa_: 2dxs A: [204047]
        automated match to d3vqsd_
        protein/RNA complex; complexed with jtp
      2. 2221342Domain d2dxsb_: 2dxs B: [204048]
        automated match to d3vqsd_
        protein/RNA complex; complexed with jtp
    14. Domains for 2gc8:
      1. 2221339Domain d2gc8a_: 2gc8 A: [134970]
        automated match to d1nb4a_
        complexed with 885
      2. 2221340Domain d2gc8b_: 2gc8 B: [134971]
        automated match to d1nb4a_
        complexed with 885
    15. Domains for 2hwh:
      1. 2221354Domain d2hwha2: 2hwh A:3-564 [136822]
        Other proteins in same PDB: d2hwha3, d2hwhb3
        automated match to d1c2pb_
        protein/RNA complex; complexed with rna
      2. 2221355Domain d2hwhb2: 2hwh B:3-566 [136823]
        Other proteins in same PDB: d2hwha3, d2hwhb3
        automated match to d1c2pb_
        protein/RNA complex; complexed with rna
    16. Domains for 2hwi:
      1. 2221327Domain d2hwia2: 2hwi A:3-564 [136824]
        Other proteins in same PDB: d2hwia3, d2hwib3
        automated match to d1c2pb_
        protein/RNA complex; complexed with vrx
      2. 2221328Domain d2hwib2: 2hwi B:3-566 [136825]
        Other proteins in same PDB: d2hwia3, d2hwib3
        automated match to d1c2pb_
        protein/RNA complex; complexed with vrx
    17. Domains for 2i1r:
      1. 2221352Domain d2i1ra2: 2i1r A:3-564 [136986]
        Other proteins in same PDB: d2i1ra3, d2i1rb3
        automated match to d1c2pb_
        protein/RNA complex; complexed with vxr
      2. 2221353Domain d2i1rb2: 2i1r B:3-566 [136987]
        Other proteins in same PDB: d2i1ra3, d2i1rb3
        automated match to d1c2pb_
        protein/RNA complex; complexed with vxr
    18. Domains for 2jc0:
      1. 2221333Domain d2jc0a_: 2jc0 A: [165991]
        automated match to d1nb4a_
        complexed with 699
      2. 2221334Domain d2jc0b_: 2jc0 B: [165992]
        automated match to d1nb4a_
        complexed with 699
    19. Domains for 2jc1:
      1. 2221316Domain d2jc1a_: 2jc1 A: [165993]
        automated match to d1nb4a_
        complexed with 698
      2. 2221317Domain d2jc1b_: 2jc1 B: [165994]
        automated match to d1nb4a_
        complexed with 698
    20. Domains for 2o5d:
      1. 2221337Domain d2o5da2: 2o5d A:3-564 [138918]
        Other proteins in same PDB: d2o5da3, d2o5db3
        automated match to d1c2pb_
        protein/RNA complex; complexed with vr1
      2. 2221338Domain d2o5db2: 2o5d B:3-566 [138919]
        Other proteins in same PDB: d2o5da3, d2o5db3
        automated match to d1c2pb_
        protein/RNA complex; complexed with vr1
    21. Domains for 2xhu:
      1. 2221335Domain d2xhua_: 2xhu A: [170098]
        automated match to d1nb4a_
        complexed with so4
      2. 2221336Domain d2xhub_: 2xhu B: [170099]
        automated match to d1nb4a_
        complexed with so4
    22. Domains for 2xhv:
      1. 2221309Domain d2xhva_: 2xhv A: [170100]
        automated match to d1nb4a_
        complexed with mg, so4; mutant
      2. 2221310Domain d2xhvb_: 2xhv B: [170101]
        automated match to d1nb4a_
        complexed with mg, so4; mutant
    23. Domain for 2xhw:
    24. Domains for 2xi2:
      1. 2221301Domain d2xi2a_: 2xi2 A: [170103]
        automated match to d1nb4a_
        complexed with so4
      2. 2221302Domain d2xi2b_: 2xi2 B: [170104]
        automated match to d1nb4a_
        complexed with so4
      3. 2221303Domain d2xi2c_: 2xi2 C: [170105]
        automated match to d1nb4a_
        complexed with so4
    25. Domains for 2xi3:
      1. 2221299Domain d2xi3a_: 2xi3 A: [170106]
        automated match to d1nb4a_
        complexed with gtp, mg
      2. 2221300Domain d2xi3b_: 2xi3 B: [170107]
        automated match to d1nb4a_
        complexed with gtp, mg
    26. Domain for 2xwy:
    27. Domain for 2xxd:
    28. Domains for 3br9:
      1. 2221343Domain d3br9a_: 3br9 A: [172796]
        automated match to d1nb4a_
        protein/RNA complex; complexed with dey
      2. 2221344Domain d3br9b_: 3br9 B: [172797]
        automated match to d1nb4a_
        protein/RNA complex; complexed with dey
    29. Domains for 3cde:
      1. 2221323Domain d3cdea_: 3cde A: [173147]
        automated match to d1nb4a_
        protein/RNA complex; complexed with n3h
      2. 2221324Domain d3cdeb_: 3cde B: [173148]
        automated match to d1nb4a_
        protein/RNA complex; complexed with n3h
    30. Domains for 3cwj:
      1. 2221358Domain d3cwja_: 3cwj A: [173515]
        automated match to d1nb4a_
        protein/RNA complex; complexed with 321
      2. 2221359Domain d3cwjb_: 3cwj B: [173516]
        automated match to d1nb4a_
        protein/RNA complex; complexed with 321
    31. Domains for 3phe:
      1. 2221347Domain d3phea_: 3phe A: [183740]
        automated match to d1nb4a_
        protein/RNA complex; complexed with c9a
      2. 2221348Domain d3pheb_: 3phe B: [183741]
        automated match to d1nb4a_
        protein/RNA complex; complexed with c9a
      3. 2221349Domain d3phec_: 3phe C: [183742]
        automated match to d1nb4a_
        protein/RNA complex; complexed with c9a
      4. 2221350Domain d3phed_: 3phe D: [183743]
        automated match to d1nb4a_
        protein/RNA complex; complexed with c9a
    32. Domains for 3vqs:
      1. 2221311Domain d3vqsa_: 3vqs A: [194829]
        automated match to d3gnwb_
        protein/RNA complex; complexed with cl, jt1
      2. 2221312Domain d3vqsb_: 3vqs B: [194831]
        automated match to d3gnwb_
        protein/RNA complex; complexed with cl, jt1
      3. 2221313Domain d3vqsc_: 3vqs C: [194828]
        automated match to d3gnwb_
        protein/RNA complex; complexed with cl, jt1
      4. 2221314Domain d3vqsd_: 3vqs D: [194830]
        automated match to d3gnwb_
        protein/RNA complex; complexed with cl, jt1
    33. Domain for 4adp:
    34. Domain for 4aep:
    35. Domains for 4aex:
      1. 2221345Domain d4aexa_: 4aex A: [195482]
        automated match to d3gnwb_
        complexed with po4
      2. 2221346Domain d4aexb_: 4aex B: [195481]
        automated match to d3gnwb_
        complexed with po4
    36. Domains for 4txs:
      1. 2221371Domain d4txsa_: 4txs A: [272392]
        automated match to d4mz4a_
        complexed with 3aq
      2. 2221372Domain d4txsb_: 4txs B: [272394]
        automated match to d4mz4a_
        complexed with 3aq
      3. 2221373Domain d4txsc_: 4txs C: [272393]
        automated match to d4mz4a_
        complexed with 3aq
      4. 2221374Domain d4txsd_: 4txs D: [272395]
        automated match to d4mz4a_
        complexed with 3aq
    37. Domains for 4ty8:
      1. 2221367Domain d4ty8a_: 4ty8 A: [272390]
        automated match to d4mz4a_
        complexed with 3av
      2. 2221368Domain d4ty8b_: 4ty8 B: [272388]
        automated match to d4mz4a_
        complexed with 3av
      3. 2221369Domain d4ty8c_: 4ty8 C: [272396]
        automated match to d4mz4a_
        complexed with 3av
      4. 2221370Domain d4ty8d_: 4ty8 D: [272389]
        automated match to d4mz4a_
        complexed with 3av
    38. Domains for 4ty9:
      1. 2221363Domain d4ty9a_: 4ty9 A: [272397]
        automated match to d4mz4a_
        complexed with 3b0
      2. 2221364Domain d4ty9b_: 4ty9 B: [272401]
        automated match to d4mz4a_
        complexed with 3b0
      3. 2221365Domain d4ty9c_: 4ty9 C: [272402]
        automated match to d4mz4a_
        complexed with 3b0
      4. 2221366Domain d4ty9d_: 4ty9 D: [272403]
        automated match to d4mz4a_
        complexed with 3b0
    39. Domains for 4tya:
      1. 2221379Domain d4tyaa_: 4tya A: [272391]
        automated match to d4mz4a_
        complexed with 3ae
      2. 2221380Domain d4tyab_: 4tya B: [272398]
        automated match to d4mz4a_
        complexed with 3ae
      3. 2221381Domain d4tyac_: 4tya C: [272400]
        automated match to d4mz4a_
        complexed with 3ae
      4. 2221382Domain d4tyad_: 4tya D: [272399]
        automated match to d4mz4a_
        complexed with 3ae
    40. Domains for 4tyb:
      1. 2221375Domain d4tyba_: 4tyb A: [272995]
        automated match to d3qgda_
        complexed with 3b1
      2. 2221376Domain d4tybb_: 4tyb B: [272997]
        automated match to d3qgda_
        complexed with 3b1
      3. 2221377Domain d4tybc_: 4tyb C: [272996]
        automated match to d3qgda_
        complexed with 3b1
      4. 2221378Domain d4tybd_: 4tyb D: [272998]
        automated match to d3qgda_
        complexed with 3b1
    41. Domains for 5trh:
      1. 2283512Domain d5trhb_: 5trh B: [326813]
        automated match to d3q0za_
        protein/RNA complex; complexed with 23e, 7hl, so4
      2. 2283533Domain d5trha_: 5trh A: [326834]
        automated match to d3q0za_
        protein/RNA complex; complexed with 23e, 7hl, so4
    42. Domains for 5tri:
      1. 2283513Domain d5tria_: 5tri A: [326814]
        automated match to d3q0za_
        protein/RNA complex; complexed with 23e, 7hm, so4
      2. 2283521Domain d5trib_: 5tri B: [326822]
        automated match to d3q0za_
        protein/RNA complex; complexed with 23e, 7hm, so4
    43. Domains for 5trj:
      1. 2283464Domain d5trja_: 5trj A: [326765]
        automated match to d3q0za_
        protein/RNA complex; complexed with 23e, 7ho, so4
      2. 2283496Domain d5trjb_: 5trj B: [326797]
        automated match to d3q0za_
        protein/RNA complex; complexed with 23e, 7ho, so4
    44. Domains for 5trk:
      1. 2283462Domain d5trka_: 5trk A: [326763]
        automated match to d3q0za_
        protein/RNA complex; complexed with 23e, 7hh, so4
      2. 2283520Domain d5trkb_: 5trk B: [326821]
        automated match to d3q0za_
        protein/RNA complex; complexed with 23e, 7hh, so4
  15. 2221383Hepatitis C virus [TaxId:11105] [188793] (3 PDB entries)
    1. Domain for 2wcx:
    2. Domains for 3fqk:
      1. 2221387Domain d3fqka1: 3fqk A:2-562 [175979]
        Other proteins in same PDB: d3fqka2, d3fqkb2
        automated match to d1nb4a_
        complexed with 79z
      2. 2221388Domain d3fqkb1: 3fqk B:2-562 [175980]
        Other proteins in same PDB: d3fqka2, d3fqkb2
        automated match to d1nb4a_
        complexed with 79z
    3. Domains for 3g86:
      1. 2221385Domain d3g86a1: 3g86 A:2-562 [176414]
        Other proteins in same PDB: d3g86a2, d3g86b2
        automated match to d1nb4a_
        complexed with ni, t18
      2. 2221386Domain d3g86b1: 3g86 B:2-562 [176415]
        Other proteins in same PDB: d3g86a2, d3g86b2
        automated match to d1nb4a_
        complexed with ni, t18
  16. 2221389Hepatitis C virus [TaxId:333284] [188792] (1 PDB entry)
  17. 2221391Hepatitis C virus [TaxId:356411] [189609] (1 PDB entry)
  18. 2221393Hepatitis C virus [TaxId:420174] [189885] (4 PDB entries)
    1. Domains for 2yoj:
      1. 2221399Domain d2yoja_: 2yoj A: [228281]
        automated match to d3upia_
        complexed with 8y6, po4
      2. 2221400Domain d2yojb_: 2yoj B: [228282]
        automated match to d3upia_
        complexed with 8y6, po4
    2. Domain for 3ska:
    3. Domains for 3uph:
      1. 2221395Domain d3upha_: 3uph A: [186370]
        automated match to d1nb4a_
        complexed with 0c1, po4
      2. 2221396Domain d3uphb_: 3uph B: [186371]
        automated match to d1nb4a_
        complexed with 0c1, po4
    4. Domains for 3upi:
      1. 2221397Domain d3upia_: 3upi A: [186372]
        automated match to d1nb4a_
        complexed with 0c2, po4
      2. 2221398Domain d3upib_: 3upi B: [186373]
        automated match to d1nb4a_
        complexed with 0c2, po4
  19. 2221401Human coxsackievirus B3 [TaxId:12072] [193138] (3 PDB entries)
    1. Domains for 4k4x:
      1. 2221406Domain d4k4xa1: 4k4x A:1-462 [193139]
        Other proteins in same PDB: d4k4xa2, d4k4xe2, d4k4xi2, d4k4xm2
        automated match to d1ra6a_
        protein/RNA complex; complexed with gol, mg
      2. 2221407Domain d4k4xe1: 4k4x E:1-462 [202827]
        Other proteins in same PDB: d4k4xa2, d4k4xe2, d4k4xi2, d4k4xm2
        automated match to d4k4xa_
        protein/RNA complex; complexed with gol, mg
      3. 2221408Domain d4k4xi1: 4k4x I:1-462 [202828]
        Other proteins in same PDB: d4k4xa2, d4k4xe2, d4k4xi2, d4k4xm2
        automated match to d4k4xa_
        protein/RNA complex; complexed with gol, mg
      4. 2221409Domain d4k4xm1: 4k4x M:1-462 [193140]
        Other proteins in same PDB: d4k4xa2, d4k4xe2, d4k4xi2, d4k4xm2
        automated match to d1ra6a_
        protein/RNA complex; complexed with gol, mg
    2. Domains for 4k4y:
      1. 2221410Domain d4k4ya1: 4k4y A:1-462 [197201]
        Other proteins in same PDB: d4k4ya2, d4k4ye2, d4k4yi2, d4k4ym2
        automated match to d1ra6a_
        protein/RNA complex; complexed with act, dct, gol
      2. 2221411Domain d4k4ye1: 4k4y E:1-462 [202829]
        Other proteins in same PDB: d4k4ya2, d4k4ye2, d4k4yi2, d4k4ym2
        automated match to d4k4xa_
        protein/RNA complex; complexed with act, dct, gol
      3. 2221412Domain d4k4yi1: 4k4y I:1-462 [202830]
        Other proteins in same PDB: d4k4ya2, d4k4ye2, d4k4yi2, d4k4ym2
        automated match to d4k4xa_
        protein/RNA complex; complexed with act, dct, gol
      4. 2221413Domain d4k4ym1: 4k4y M:1-462 [202831]
        Other proteins in same PDB: d4k4ya2, d4k4ye2, d4k4yi2, d4k4ym2
        automated match to d4k4xa_
        protein/RNA complex; complexed with act, dct, gol
    3. Domains for 4k4z:
      1. 2221402Domain d4k4za_: 4k4z A: [224165]
        automated match to d4k4xa_
        protein/RNA complex; complexed with mg
      2. 2221403Domain d4k4ze_: 4k4z E: [224166]
        automated match to d4k4xa_
        protein/RNA complex; complexed with mg
      3. 2221404Domain d4k4zi_: 4k4z I: [224167]
        automated match to d4k4xa_
        protein/RNA complex; complexed with mg
      4. 2221405Domain d4k4zm_: 4k4z M: [224168]
        automated match to d4k4xa_
        protein/RNA complex; complexed with mg
  20. 2221414Human coxsackievirus [TaxId:12072] [188608] (1 PDB entry)
  21. 2221416Human enterovirus 71 [TaxId:39054] [189988] (4 PDB entries)
    1. Domain for 3n6l:
    2. Domain for 3n6m:
    3. Domain for 3n6n:
    4. Domain for 4ika:
  22. 2221421Human poliovirus 1 [TaxId:12081] [193135] (16 PDB entries)
    1. Domains for 4k4s:
      1. 2221423Domain d4k4sa1: 4k4s A:1-461 [224161]
        Other proteins in same PDB: d4k4sa2, d4k4se2
        automated match to d4k4ta_
        protein/RNA complex; complexed with gol, zn
      2. 2221424Domain d4k4se1: 4k4s E:1-461 [224162]
        Other proteins in same PDB: d4k4sa2, d4k4se2
        automated match to d4k4ta_
        protein/RNA complex; complexed with gol, zn
    2. Domains for 4k4t:
      1. 2221435Domain d4k4ta1: 4k4t A:1-461 [193136]
        Other proteins in same PDB: d4k4ta2, d4k4te2
        automated match to d1ra6a_
        protein/RNA complex; complexed with gol, zn
      2. 2221436Domain d4k4te1: 4k4t E:1-461 [202825]
        Other proteins in same PDB: d4k4ta2, d4k4te2
        automated match to d4k4ta_
        protein/RNA complex; complexed with gol, zn
    3. Domains for 4k4u:
      1. 2221439Domain d4k4ua1: 4k4u A:1-461 [224163]
        Other proteins in same PDB: d4k4ua2, d4k4ue2
        automated match to d4k4va_
        protein/RNA complex; complexed with so4
      2. 2221440Domain d4k4ue1: 4k4u E:1-461 [224164]
        Other proteins in same PDB: d4k4ua2, d4k4ue2
        automated match to d4k4va_
        protein/RNA complex; complexed with so4
    4. Domains for 4k4v:
      1. 2221441Domain d4k4va1: 4k4v A:1-461 [193137]
        Other proteins in same PDB: d4k4va2, d4k4ve2
        automated match to d1ra6a_
        protein/RNA complex; complexed with so4
      2. 2221442Domain d4k4ve1: 4k4v E:1-461 [202826]
        Other proteins in same PDB: d4k4va2, d4k4ve2
        automated match to d4k4va_
        protein/RNA complex; complexed with so4
    5. Domains for 4k4w:
      1. 2221433Domain d4k4wa1: 4k4w A:1-461 [193141]
        Other proteins in same PDB: d4k4wa2, d4k4we2
        automated match to d1ra6a_
        protein/RNA complex
      2. 2221434Domain d4k4we1: 4k4w E:1-461 [193144]
        Other proteins in same PDB: d4k4wa2, d4k4we2
        automated match to d1ra6a_
        protein/RNA complex
    6. Domain for 4nlo:
    7. Domain for 4nlp:
    8. Domain for 4nlq:
    9. Domain for 4nlr:
    10. Domain for 4nls:
    11. Domain for 4nlt:
    12. Domain for 4nlu:
    13. Domain for 4nlv:
    14. Domain for 4nlw:
    15. Domain for 4nlx:
    16. Domain for 4nly:
  23. 2221443Human rhinovirus a16 [TaxId:31708] [193142] (1 PDB entry)
  24. 2221445Murine norovirus 1 [TaxId:223997] [189982] (8 PDB entries)
    1. Domains for 3nah:
      1. 2221470Domain d3naha_: 3nah A: [182114]
        automated match to d1sh0a_
        complexed with so4
      2. 2221471Domain d3nahb_: 3nah B: [182115]
        automated match to d1sh0a_
        complexed with so4
      3. 2221472Domain d3nahc_: 3nah C: [182116]
        automated match to d1sh0a_
        complexed with so4
    2. Domains for 3nai:
      1. 2221455Domain d3naia_: 3nai A: [182117]
        automated match to d1sh0a_
        complexed with gol, mg, mn3, so4, urf
      2. 2221456Domain d3naib_: 3nai B: [182118]
        automated match to d1sh0a_
        complexed with gol, mg, mn3, so4, urf
      3. 2221457Domain d3naic_: 3nai C: [182119]
        automated match to d1sh0a_
        complexed with gol, mg, mn3, so4, urf
    3. Domains for 3qid:
      1. 2221467Domain d3qida_: 3qid A: [184400]
        automated match to d1sh0a_
        complexed with gol, mn3, so4
      2. 2221468Domain d3qidb_: 3qid B: [184401]
        automated match to d1sh0a_
        complexed with gol, mn3, so4
      3. 2221469Domain d3qidc_: 3qid C: [184402]
        automated match to d1sh0a_
        complexed with gol, mn3, so4
    4. Domains for 3sfg:
      1. 2221446Domain d3sfga_: 3sfg A: [216381]
        automated match to d3naha_
        protein/RNA complex; complexed with 2tu, gol, mg, so4
      2. 2221447Domain d3sfgb_: 3sfg B: [216382]
        automated match to d3naha_
        protein/RNA complex; complexed with 2tu, gol, mg, so4
      3. 2221448Domain d3sfgc_: 3sfg C: [216383]
        automated match to d3naha_
        protein/RNA complex; complexed with 2tu, gol, mg, so4
    5. Domains for 3sfu:
      1. 2221449Domain d3sfua_: 3sfu A: [216384]
        automated match to d3naha_
        protein/RNA complex; complexed with gol, mg, rbv, so4
      2. 2221450Domain d3sfub_: 3sfu B: [216385]
        automated match to d3naha_
        protein/RNA complex; complexed with gol, mg, rbv, so4
      3. 2221451Domain d3sfuc_: 3sfu C: [216386]
        automated match to d3naha_
        protein/RNA complex; complexed with gol, mg, rbv, so4
    6. Domains for 3upf:
      1. 2221452Domain d3upfa_: 3upf A: [217472]
        automated match to d1sh0a_
        protein/RNA complex; complexed with 0bu, so4
      2. 2221453Domain d3upfb_: 3upf B: [217473]
        automated match to d1sh0a_
        protein/RNA complex; complexed with 0bu, so4
      3. 2221454Domain d3upfc_: 3upf C: [217474]
        automated match to d1sh0a_
        protein/RNA complex; complexed with 0bu, so4
    7. Domains for 4nru:
      1. 2221458Domain d4nrua_: 4nru A: [260332]
        automated match to d1sh0b_
        protein/RNA complex; complexed with 2ng, mg
      2. 2221459Domain d4nrub_: 4nru B: [263215]
        automated match to d1sh0b_
        protein/RNA complex; complexed with 2ng, mg
      3. 2221460Domain d4nruc_: 4nru C: [263216]
        automated match to d1sh0b_
        protein/RNA complex; complexed with 2ng, mg
      4. 2221461Domain d4nrud_: 4nru D: [263217]
        automated match to d1sh0b_
        protein/RNA complex; complexed with 2ng, mg
      5. 2221462Domain d4nrue_: 4nru E: [263218]
        automated match to d1sh0b_
        protein/RNA complex; complexed with 2ng, mg
      6. 2221463Domain d4nruf_: 4nru F: [263219]
        automated match to d1sh0b_
        protein/RNA complex; complexed with 2ng, mg
    8. Domains for 4o4r:
      1. 2221464Domain d4o4ra_: 4o4r A: [263246]
        automated match to d1sh0b_
        protein/RNA complex; complexed with 20v, so4
      2. 2221465Domain d4o4rb_: 4o4r B: [263247]
        automated match to d1sh0b_
        protein/RNA complex; complexed with 20v, so4
      3. 2221466Domain d4o4rc_: 4o4r C: [260714]
        automated match to d1sh0b_
        protein/RNA complex; complexed with 20v, so4
  25. 2221473Murine norovirus [TaxId:223997] [226374] (2 PDB entries)
    1. Domains for 3uqs:
      1. 2221474Domain d3uqsa_: 3uqs A: [217492]
        automated match to d1sh0b_
        complexed with so4
      2. 2221475Domain d3uqsb_: 3uqs B: [217493]
        automated match to d1sh0b_
        complexed with so4
      3. 2221476Domain d3uqsc_: 3uqs C: [217494]
        automated match to d1sh0b_
        complexed with so4
    2. Domains for 3ur0:
      1. 2221477Domain d3ur0a_: 3ur0 A: [217497]
        automated match to d1sh0b_
        protein/RNA complex; complexed with so4, svr
      2. 2221478Domain d3ur0b_: 3ur0 B: [217498]
        automated match to d1sh0b_
        protein/RNA complex; complexed with so4, svr
      3. 2221479Domain d3ur0c_: 3ur0 C: [217499]
        automated match to d1sh0b_
        protein/RNA complex; complexed with so4, svr
  26. 2221480Norwalk-like virus [TaxId:95340] [260334] (1 PDB entry)
  27. 2288056Hepatitis c virus genotype 1b (isolate con1) [TaxId:333284] [331357] (7 PDB entries)
    1. Domains for 5pzk:
      1. 2290941Domain d5pzkb_: 5pzk B: [334242]
        automated match to d3q0za_
        protein/RNA complex; complexed with 23e, 2n5, gol, pg4, so4
      2. 2290962Domain d5pzka_: 5pzk A: [334263]
        automated match to d3q0za_
        protein/RNA complex; complexed with 23e, 2n5, gol, pg4, so4
    2. Domains for 5pzl:
      1. 2290947Domain d5pzla_: 5pzl A: [334248]
        automated match to d3q0za_
        protein/RNA complex; complexed with 23e, 8xv, so4
      2. 2290991Domain d5pzlb_: 5pzl B: [334292]
        automated match to d3q0za_
        protein/RNA complex; complexed with 23e, 8xv, so4
    3. Domains for 5pzm:
      1. 2290950Domain d5pzma_: 5pzm A: [334251]
        automated match to d3q0za_
        protein/RNA complex; complexed with 23e, 8xs, gol, so4
      2. 2290964Domain d5pzmb_: 5pzm B: [334265]
        automated match to d3q0za_
        protein/RNA complex; complexed with 23e, 8xs, gol, so4
    4. Domains for 5pzn:
      1. 2290937Domain d5pzna_: 5pzn A: [334238]
        automated match to d3q0za_
        protein/RNA complex; complexed with 23e, 8xp, gol, so4
      2. 2290944Domain d5pznb_: 5pzn B: [334245]
        automated match to d3q0za_
        protein/RNA complex; complexed with 23e, 8xp, gol, so4
    5. Domains for 5pzo:
      1. 2290939Domain d5pzoa_: 5pzo A: [334240]
        automated match to d3q0za_
        protein/RNA complex; complexed with 23e, 8xm, gol, so4
      2. 2290956Domain d5pzob_: 5pzo B: [334257]
        automated match to d3q0za_
        protein/RNA complex; complexed with 23e, 8xm, gol, so4
    6. Domains for 5pzp:
      1. 2290936Domain d5pzpb_: 5pzp B: [334237]
        automated match to d3q0za_
        protein/RNA complex; complexed with 23e, 8xj, gol, so4
      2. 2291023Domain d5pzpa_: 5pzp A: [334324]
        automated match to d3q0za_
        protein/RNA complex; complexed with 23e, 8xj, gol, so4
    7. Domains for 5twn:
      1. 2288057Domain d5twna_: 5twn A: [331358]
        automated match to d3q0za_
        protein/RNA complex; complexed with 23e, 7ng, so4
      2. 2288088Domain d5twnb_: 5twn B: [331389]
        automated match to d3q0za_
        protein/RNA complex; complexed with 23e, 7ng, so4
  28. 2293070Enterovirus d68 [TaxId:42789] [336371] (1 PDB entry)

More info for Protein automated matches from e.8.1.4: RNA-dependent RNA-polymerase

Timeline for Protein automated matches from e.8.1.4: RNA-dependent RNA-polymerase: