PDB entry 3udl

View 3udl on RCSB PDB site
Description: 3-heterocyclyl quinolone bound to HCV NS5B
Class: hydrolase/hydrolase inhibitor
Keywords: HCV, polymerase, drug design, HYDROLASE-HYDROLASE INHIBITOR complex
Deposited on 2011-10-28, released 2011-12-21
The last revision prior to the SCOPe 2.07 freeze date was dated 2011-12-21, with a file datestamp of 2011-12-16.
Experiment type: XRAY
Resolution: 2.17 Å
R-factor: 0.197
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: hcv ns5b polymerase
    Species: Hepatitis C virus subtype 1b [TaxId:31647]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3udla_
  • Chain 'B':
    Compound: hcv ns5b polymerase
    Species: Hepatitis C virus subtype 1b [TaxId:31647]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3udlb_
  • Chain 'C':
    Compound: hcv ns5b polymerase
    Species: Hepatitis C virus subtype 1b [TaxId:31647]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3udlc_
  • Chain 'D':
    Compound: hcv ns5b polymerase
    Species: Hepatitis C virus subtype 1b [TaxId:31647]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3udld_
  • Heterogens: KLI, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3udlA (A:)
hhhhhhsmsytwtgalitpcaaeesklpinalsnsllrhhnmvyattsrsaglrqkkvtf
drlqvlddhyrdvlkemkakastvkakllsveeackltpphsakskfgygakdvrnlssk
avnhihsvwkdlledtvtpidttimaknevfcvqpekggrkparlivfpdlgvrvcekma
lydvvstlpqvvmgssygfqyspgqrveflvntwkskknpmgfsydtrcfdstvtendir
veesiyqccdlapearqaikslterlyiggpltnskgqncgyrrcrasgvlttscgntlt
cylkasaacraaklqdctmlvngddlvvicesagtqedaaslrvfteamtrysappgdpp
qpeydlelitscssnvsvahdasgkrvyyltrdpttplaraawetarhtpvnswlgniim
yaptlwarmilmthffsillaqeqlekaldcqiygacysiepldlpqiierlhglsafsl
hsyspgeinrvasclrklgvpplrvwrhrarsvrarllsqggraatcgkylfnwavktkl
kltpipaasqldlsgwfvagysggdiyhslsrarpr

    Sequence, based on observed residues (ATOM records): (download) 
    >3udlA (A:)
smsytwtgalitpcaaeesklplsnsllrhhnmvyattsrsaglrqkkvtfdrlqvlddh
yrdvlkemkakastvkakllsveeackltpphsakskfgygakdvrnlsskavnhihsvw
kdlledtvtpidttimaknevfcvqrkparlivfpdlgvrvcekmalydvvstlpqvvmg
ssygfqyspgqrveflvntwkskknpmgfsydtrcfdstvtendirveesiyqccdlape
arqaikslterlyiggpltnskgqncgyrrcrasgvlttscgntltcylkasaacraakl
qdctmlvngddlvvicesagtqedaaslrvfteamtrysappgdppqpeydlelitscss
nvsvahdasgkrvyyltrdpttplaraawetarhtpvnswlgniimyaptlwarmilmth
ffsillaqeqlekaldcqiygacysiepldlpqiierlhglsafslhsyspgeinrvasc
lrklgvpplrvwrhrarsvrarllsqggraatcgkylfnwavktklkltpipaasqldls
gwfvagysggdiyhs

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3udlB (B:)
hhhhhhsmsytwtgalitpcaaeesklpinalsnsllrhhnmvyattsrsaglrqkkvtf
drlqvlddhyrdvlkemkakastvkakllsveeackltpphsakskfgygakdvrnlssk
avnhihsvwkdlledtvtpidttimaknevfcvqpekggrkparlivfpdlgvrvcekma
lydvvstlpqvvmgssygfqyspgqrveflvntwkskknpmgfsydtrcfdstvtendir
veesiyqccdlapearqaikslterlyiggpltnskgqncgyrrcrasgvlttscgntlt
cylkasaacraaklqdctmlvngddlvvicesagtqedaaslrvfteamtrysappgdpp
qpeydlelitscssnvsvahdasgkrvyyltrdpttplaraawetarhtpvnswlgniim
yaptlwarmilmthffsillaqeqlekaldcqiygacysiepldlpqiierlhglsafsl
hsyspgeinrvasclrklgvpplrvwrhrarsvrarllsqggraatcgkylfnwavktkl
kltpipaasqldlsgwfvagysggdiyhslsrarpr

    Sequence, based on observed residues (ATOM records): (download) 
    >3udlB (B:)
smsytwtgalitpcaaeesklplsnsllrhhnmvyattsrsaglrqkkvtfdrlqvlddh
yrdvlkemkakastvkakllsveeackltpphsakskfgygakdvrnlsskavnhihsvw
kdlledtvtpidttimaknevfcvqrkparlivfpdlgvrvcekmalydvvstlpqvvmg
ssygfqyspgqrveflvntwkskknpmgfsydtrcfdstvtendirveesiyqccdlape
arqaikslterlyiggpltnskgqncgyrrcrasgvlttscgntltcylkasaacraakl
qdctmlvngddlvvicesagtqedaaslrvfteamtrysappgdppqpeydlelitscss
nvsvahdasgkrvyyltrdpttplaraawetarhtpvnswlgniimyaptlwarmilmth
ffsillaqeqlekaldcqiygacysiepldlpqiierlhglsafslhsyspgeinrvasc
lrklgvpplrvwrhrarsvrarllsqggraatcgkylfnwavktklkltpipaasqldls
gwfvagysggdiyhs

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3udlC (C:)
hhhhhhsmsytwtgalitpcaaeesklpinalsnsllrhhnmvyattsrsaglrqkkvtf
drlqvlddhyrdvlkemkakastvkakllsveeackltpphsakskfgygakdvrnlssk
avnhihsvwkdlledtvtpidttimaknevfcvqpekggrkparlivfpdlgvrvcekma
lydvvstlpqvvmgssygfqyspgqrveflvntwkskknpmgfsydtrcfdstvtendir
veesiyqccdlapearqaikslterlyiggpltnskgqncgyrrcrasgvlttscgntlt
cylkasaacraaklqdctmlvngddlvvicesagtqedaaslrvfteamtrysappgdpp
qpeydlelitscssnvsvahdasgkrvyyltrdpttplaraawetarhtpvnswlgniim
yaptlwarmilmthffsillaqeqlekaldcqiygacysiepldlpqiierlhglsafsl
hsyspgeinrvasclrklgvpplrvwrhrarsvrarllsqggraatcgkylfnwavktkl
kltpipaasqldlsgwfvagysggdiyhslsrarpr

    Sequence, based on observed residues (ATOM records): (download) 
    >3udlC (C:)
smsytwtgalitpcaaeesklplsnsllrhhnmvyattsrsaglrqkkvtfdrlqvlddh
yrdvlkemkakastvkakllsveeackltpphsakskfgygakdvrnlsskavnhihsvw
kdlledtvtpidttimaknevfcvqrkparlivfpdlgvrvcekmalydvvstlpqvvmg
ssygfqyspgqrveflvntwkskknpmgfsydtrcfdstvtendirveesiyqccdlape
arqaikslterlyiggpltnskgqncgyrrcrasgvlttscgntltcylkasaacraakl
qdctmlvngddlvvicesagtqedaaslrvfteamtrysappgdppqpeydlelitscss
nvsvahdasgkrvyyltrdpttplaraawetarhtpvnswlgniimyaptlwarmilmth
ffsillaqeqlekaldcqiygacysiepldlpqiierlhglsafslhsyspgeinrvasc
lrklgvpplrvwrhrarsvrarllsqggraatcgkylfnwavktklkltpipaasqldls
gwfvagysggdiyhs

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3udlD (D:)
hhhhhhsmsytwtgalitpcaaeesklpinalsnsllrhhnmvyattsrsaglrqkkvtf
drlqvlddhyrdvlkemkakastvkakllsveeackltpphsakskfgygakdvrnlssk
avnhihsvwkdlledtvtpidttimaknevfcvqpekggrkparlivfpdlgvrvcekma
lydvvstlpqvvmgssygfqyspgqrveflvntwkskknpmgfsydtrcfdstvtendir
veesiyqccdlapearqaikslterlyiggpltnskgqncgyrrcrasgvlttscgntlt
cylkasaacraaklqdctmlvngddlvvicesagtqedaaslrvfteamtrysappgdpp
qpeydlelitscssnvsvahdasgkrvyyltrdpttplaraawetarhtpvnswlgniim
yaptlwarmilmthffsillaqeqlekaldcqiygacysiepldlpqiierlhglsafsl
hsyspgeinrvasclrklgvpplrvwrhrarsvrarllsqggraatcgkylfnwavktkl
kltpipaasqldlsgwfvagysggdiyhslsrarpr

    Sequence, based on observed residues (ATOM records): (download) 
    >3udlD (D:)
smsytwtgalitpcaaeesklplsnsllrhhnmvyattsrsaglrqkkvtfdrlqvlddh
yrdvlkemkakastvkakllsveeackltpphsakskfgygakdvrnlsskavnhihsvw
kdlledtvtpidttimaknevfcvqrkparlivfpdlgvrvcekmalydvvstlpqvvmg
ssygfqyspgqrveflvntwkskknpmgfsydtrcfdstvtendirveesiyqccdlape
arqaikslterlyiggpltnskgqncgyrrcrasgvlttscgntltcylkasaacraakl
qdctmlvngddlvvicesagtqedaaslrvfteamtrysappgdppqpeydlelitscss
nvsvahdasgkrvyyltrdpttplaraawetarhtpvnswlgniimyaptlwarmilmth
ffsillaqeqlekaldcqiygacysiepldlpqiierlhglsafslhsyspgeinrvasc
lrklgvpplrvwrhrarsvrarllsqggraatcgkylfnwavktklkltpipaasqldls
gwfvagysggdiyhs