PDB entry 2cjq

View 2cjq on RCSB PDB site
Description: bovine viral diarrhea virus cp7-r12 RNA-dependent RNA polymerase
Class: transferase
Keywords: transferase, RNA-dependent RNA polymerase, nucleotidyltransferase, bovine viral diarrhea virus, bvdv, helicase, membrane, protease, hydrolase, RNA-directed RNA polymerase, viral polymerase, nucleotide-binding, transmembrane, thiol protease, serine protease, ATP-binding, polyprotein, glycoprotein
Deposited on 2006-04-05, released 2006-07-19
The last revision prior to the SCOPe 2.07 freeze date was dated 2009-06-02, with a file datestamp of 2009-05-29.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.2311
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: RNA-directed RNA polymerase
    Species: BOVINE VIRAL DIARRHEA VIRUS [TaxId:11099]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q96662 (439-End)
      • conflict (114)
      • conflict (147)
      • conflict (347)
    • PDB 2CJQ (437-437)
    Domains in SCOPe 2.07: d2cjqa_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2cjqA (A:)
sswflqatnkqmsltplfeelllrcppkiksnkghmasayqlaqgnwepldcgvhlgtip
arrvkihpyeaylklkdlleeeekkpkcrdtvirehnkwilkkvrhqgnlntkktlnpgk
lseqldreghkrniynnqigtimteagirleklpvvraqtdtksfheairdkidknenqq
spglhdklleifhtiaqpslrhtysdvtweqleagvnrkgaagflekknvgevldsekhl
veqlirdlktgrkiryyetaipknekrdvsddwqsgdlvdekkprviqypeaktrlaitk
vmynwvkqqpvvipgyegktplfnifnkvrkewdlfnepvavsfdtknwdtqvtsrdlrl
igeiqkyyyrkewhkfidtitdhmvevpvitadgevyirngqrgsgqpdtsagnsmlnvl
tmmyafcestgvpyksfnnrvarihvcgddgflitekglglkfanngmqilheagkpqki
tegermkvayrfediefcshtpvpvrwsdntssymagrdtavilskmatrldssgergti
ayekavafsfllmyswnplvrricllvlsqqpettpstqttyyykgdpigaykdvigknl
celkrtgfeklanlnlslstlgiwskhtskriiqdcvtigkeegnwlvnadrlissktgh
lyipdkgytlqgkhyeqlqlqartspvtgvgteryklgpivnlllrrlrvllmaavgass

    Sequence, based on observed residues (ATOM records): (download) 
    >2cjqA (A:)
virehnkwilkkvrhqgnlntkktlnpgklseqniynnqigtimteagirleklpvvtdt
ksfheairdkidknenqqspglhdklleifhtiaqpslrhtysdvtweqleagvnrkgaa
gflekknvgevldsekhlveqlirdlktgrkiryyetaipknprviqypeaktrlaitkv
mynwvkqqpvvipgyegktplfnifnkvrkewdlfnepvavsfdtknwdtqvtsrdlrli
geiqkyyyrkewhkfidtitdhmvevpvitadgevyirngqrgsgqpdtsagnsmlnvlt
mmyafcestgvpyksfnnrvarihvcgddgflitekglglkfanngmqilheagkpqkit
egermkvayrfediefcshtpvpvrwsdntssymagrdtavilskmatrlgtiayekava
fsfllmyswnplvrricllvlsqqpettpstqttyyykgdpigaykdvigknlcelkrtg
feklanlnlslstlgiwskhtskriiqdcvtigkeegnwlvnadrlissktghlyipdkg
ytlqgk