Lineage for Species: Human (Homo sapiens) [TaxId: 9606]

  1. Root: SCOPe 2.07
  2. 2299346Class a: All alpha proteins [46456] (289 folds)
  3. 2342123Fold a.211: HD-domain/PDEase-like [109603] (1 superfamily)
    multihelical; consists of two different alpha-helical bundles
  4. 2342124Superfamily a.211.1: HD-domain/PDEase-like [109604] (6 families) (S)
  5. 2342214Family a.211.1.2: PDEase [48548] (7 protein domains)
    Pfam PF00233; multihelical; can be divided into three subdomains
  6. 2342277Protein Catalytic domain of cyclic nucleotide phosphodiesterase pde4d [89151] (1 species)
  7. 2342278Species Human (Homo sapiens) [TaxId:9606] [89152] (43 PDB entries)
    Uniprot Q08499 388-713

PDB entries in Species: Human (Homo sapiens) [TaxId: 9606]:

  1. Domain(s) for 1mkd:
    1. 2342374Domain d1mkda_: 1mkd A: [84982]
      complexed with mg, zar, zn
    2. 2342375Domain d1mkdb_: 1mkd B: [84983]
      complexed with mg, zar, zn
    3. 2342376Domain d1mkdc_: 1mkd C: [84984]
      complexed with mg, zar, zn
    4. 2342377Domain d1mkdd_: 1mkd D: [84985]
      complexed with mg, zar, zn
    5. 2342378Domain d1mkde_: 1mkd E: [84986]
      complexed with mg, zar, zn
    6. 2342379Domain d1mkdf_: 1mkd F: [84987]
      complexed with mg, zar, zn
    7. 2342380Domain d1mkdg_: 1mkd G: [84988]
      complexed with mg, zar, zn
    8. 2342381Domain d1mkdh_: 1mkd H: [84989]
      complexed with mg, zar, zn
    9. 2342382Domain d1mkdi_: 1mkd I: [84990]
      complexed with mg, zar, zn
    10. 2342383Domain d1mkdj_: 1mkd J: [84991]
      complexed with mg, zar, zn
    11. 2342384Domain d1mkdk_: 1mkd K: [84992]
      complexed with mg, zar, zn
    12. 2342385Domain d1mkdl_: 1mkd L: [84993]
      complexed with mg, zar, zn
  2. Domain(s) for 1oym:
    1. 2342346Domain d1oyma_: 1oym A: [302867]
      automated match to d1oyna_
      complexed with rol, zn
    2. 2342347Domain d1oymb_: 1oym B: [302868]
      automated match to d1oyna_
      complexed with rol, zn
  3. Domain(s) for 1oyn:
    1. 2342326Domain d1oyna_: 1oyn A: [87609]
      complexed with rol, zn
    2. 2342327Domain d1oynb_: 1oyn B: [87610]
      complexed with rol, zn
    3. 2342328Domain d1oync_: 1oyn C: [87611]
      complexed with rol, zn
    4. 2342329Domain d1oynd_: 1oyn D: [87612]
      complexed with rol, zn
  4. Domain(s) for 1ptw:
    1. 2342348Domain d1ptwa_: 1ptw A: [95106]
      complexed with amp, zn
    2. 2342349Domain d1ptwb_: 1ptw B: [95107]
      complexed with amp, zn
    3. 2342350Domain d1ptwc_: 1ptw C: [95108]
      complexed with amp, zn
    4. 2342351Domain d1ptwd_: 1ptw D: [95109]
      complexed with amp, zn
  5. Domain(s) for 1q9m:
    1. 2342342Domain d1q9ma_: 1q9m A: [96288]
      complexed with rol, zn
    2. 2342343Domain d1q9mb_: 1q9m B: [96289]
      complexed with rol, zn
    3. 2342344Domain d1q9mc_: 1q9m C: [96290]
      complexed with rol, zn
    4. 2342345Domain d1q9md_: 1q9m D: [96291]
      complexed with rol, zn
  6. Domain(s) for 1rko:
    1. 2342338Domain d1rkoa_: 1rko A: [344508]
      automated match to d3g4id_
      complexed with ibm, zn
    2. 2342339Domain d1rkob_: 1rko B: [344509]
      automated match to d3g4id_
      complexed with ibm, zn
    3. 2342340Domain d1rkoc_: 1rko C: [344510]
      automated match to d3g4id_
      complexed with ibm, zn
    4. 2342341Domain d1rkod_: 1rko D: [344511]
      automated match to d3g4id_
      complexed with ibm, zn
  7. Domain(s) for 1tb7:
    1. 2342289Domain d1tb7a_: 1tb7 A: [106739]
      complexed with amp, b3p, edo, mg, zn
    2. 2342290Domain d1tb7b_: 1tb7 B: [106740]
      complexed with amp, b3p, edo, mg, zn
  8. Domain(s) for 1tbb:
    1. 2342287Domain d1tbba_: 1tbb A: [106741]
      complexed with edo, mg, rol, zn
    2. 2342288Domain d1tbbb_: 1tbb B: [106742]
      complexed with edo, mg, rol, zn
  9. Domain(s) for 1xom:
    1. 2342285Domain d1xoma_: 1xom A: [115704]
      complexed with cio, edo, mg, zn
    2. 2342286Domain d1xomb_: 1xom B: [115705]
      complexed with cio, edo, mg, zn
  10. Domain(s) for 1xon:
    1. 2342299Domain d1xona_: 1xon A: [115706]
      complexed with b3p, edo, mg, pil, zn
    2. 2342300Domain d1xonb_: 1xon B: [115707]
      complexed with b3p, edo, mg, pil, zn
  11. Domain(s) for 1xoq:
    1. 2342301Domain d1xoqa_: 1xoq A: [115708]
      complexed with edo, mg, rof, zn
    2. 2342302Domain d1xoqb_: 1xoq B: [115709]
      complexed with edo, mg, rof, zn
  12. Domain(s) for 1xor:
    1. 2342283Domain d1xora_: 1xor A: [115710]
      complexed with mg, zar, zn
    2. 2342284Domain d1xorb_: 1xor B: [115711]
      complexed with mg, zar, zn
  13. Domain(s) for 1y2b:
    1. 2342281Domain d1y2ba_: 1y2b A: [122556]
      automated match to d1oyna_
      complexed with dee, edo, mg, zn
    2. 2342282Domain d1y2bb_: 1y2b B: [122557]
      automated match to d1oyna_
      complexed with dee, edo, mg, zn
  14. Domain(s) for 1y2c:
    1. 2342295Domain d1y2ca_: 1y2c A: [122558]
      automated match to d1oyna_
      complexed with 3de, edo, mg, zn
    2. 2342296Domain d1y2cb_: 1y2c B: [122559]
      automated match to d1oyna_
      complexed with 3de, edo, mg, zn
  15. Domain(s) for 1y2d:
    1. 2342293Domain d1y2da_: 1y2d A: [122560]
      automated match to d1oyna_
      complexed with 4de, b3p, edo, mg, zn
    2. 2342294Domain d1y2db_: 1y2d B: [122561]
      automated match to d1oyna_
      complexed with 4de, b3p, edo, mg, zn
  16. Domain(s) for 1y2e:
    1. 2342315Domain d1y2ea_: 1y2e A: [122562]
      automated match to d1oyna_
      complexed with 5de, edo, mg, zn
    2. 2342316Domain d1y2eb_: 1y2e B: [122563]
      automated match to d1oyna_
      complexed with 5de, edo, mg, zn
  17. Domain(s) for 1y2k:
    1. 2342279Domain d1y2ka_: 1y2k A: [122571]
      automated match to d1oyna_
      complexed with 7de, edo, mg, zn
    2. 2342280Domain d1y2kb_: 1y2k B: [122572]
      automated match to d1oyna_
      complexed with 7de, edo, mg, zn
  18. Domain(s) for 1zkn:
    1. 2342334Domain d1zkna_: 1zkn A: [125201]
      automated match to d1oyna_
      complexed with ibm, mg, zn
    2. 2342335Domain d1zknb_: 1zkn B: [125202]
      automated match to d1oyna_
      complexed with ibm, mg, zn
    3. 2342336Domain d1zknc_: 1zkn C: [125203]
      automated match to d1oyna_
      complexed with ibm, mg, zn
    4. 2342337Domain d1zknd_: 1zkn D: [125204]
      automated match to d1oyna_
      complexed with ibm, mg, zn
  19. Domain(s) for 2fm0:
    1. 2342317Domain d2fm0a_: 2fm0 A: [133752]
      automated match to d1f0ja_
      complexed with m98, mg, zn
    2. 2342318Domain d2fm0b_: 2fm0 B: [133753]
      automated match to d1f0ja_
      complexed with m98, mg, zn
    3. 2342319Domain d2fm0c_: 2fm0 C: [133754]
      automated match to d1f0ja_
      complexed with m98, mg, zn
    4. 2342320Domain d2fm0d_: 2fm0 D: [133755]
      automated match to d1f0ja_
      complexed with m98, mg, zn
  20. Domain(s) for 2fm5:
    1. 2342330Domain d2fm5a_: 2fm5 A: [133761]
      automated match to d1f0ja_
      complexed with m99, mg, zn
    2. 2342331Domain d2fm5b_: 2fm5 B: [133762]
      automated match to d1f0ja_
      complexed with m99, mg, zn
    3. 2342332Domain d2fm5c_: 2fm5 C: [133763]
      automated match to d1f0ja_
      complexed with m99, mg, zn
    4. 2342333Domain d2fm5d_: 2fm5 D: [133764]
      automated match to d1f0ja_
      complexed with m99, mg, zn
  21. Domain(s) for 2pw3:
    1. 2342291Domain d2pw3a_: 2pw3 A: [167297]
      automated match to d1mkda_
      complexed with cmp, zn
    2. 2342292Domain d2pw3b_: 2pw3 B: [167298]
      automated match to d1mkda_
      complexed with cmp, zn
  22. Domain(s) for 2qyn:
    1. 2342297Domain d2qyna_: 2qyn A: [151475]
      automated match to d1mkda_
      complexed with mg, npv, zn
    2. 2342298Domain d2qynb_: 2qyn B: [151476]
      automated match to d1mkda_
      complexed with mg, npv, zn
  23. Domain(s) for 3g4i:
    1. 2342303Domain d3g4ia_: 3g4i A: [210359]
      automated match to d1f0ja_
      complexed with d71, eoh, mg, so4, zn
    2. 2342304Domain d3g4ib_: 3g4i B: [232238]
      automated match to d3g4id_
      complexed with d71, eoh, mg, so4, zn
    3. 2342305Domain d3g4ic_: 3g4i C: [210360]
      automated match to d1f0ja_
      complexed with d71, eoh, mg, so4, zn
    4. 2342306Domain d3g4id_: 3g4i D: [210361]
      automated match to d1f0ja_
      complexed with d71, eoh, mg, so4, zn
  24. Domain(s) for 3g4k:
    1. 2342307Domain d3g4ka_: 3g4k A: [210362]
      automated match to d1f0ja_
      complexed with edo, mg, rol, so4, zn
    2. 2342308Domain d3g4kb_: 3g4k B: [232239]
      automated match to d3g4id_
      complexed with edo, mg, rol, so4, zn
    3. 2342309Domain d3g4kc_: 3g4k C: [210363]
      automated match to d1f0ja_
      complexed with edo, mg, rol, so4, zn
    4. 2342310Domain d3g4kd_: 3g4k D: [210364]
      automated match to d1f0ja_
      complexed with edo, mg, rol, so4, zn
  25. Domain(s) for 3g4l:
    1. 2342356Domain d3g4la_: 3g4l A: [210365]
      automated match to d1f0ja_
      complexed with edo, mg, rof, so4, zn
    2. 2342357Domain d3g4lb_: 3g4l B: [232240]
      automated match to d3g4id_
      complexed with edo, mg, rof, so4, zn
    3. 2342358Domain d3g4lc_: 3g4l C: [232241]
      automated match to d3g4id_
      complexed with edo, mg, rof, so4, zn
    4. 2342359Domain d3g4ld_: 3g4l D: [210366]
      automated match to d1f0ja_
      complexed with edo, mg, rof, so4, zn
  26. Domain(s) for 3g58:
    1. 2342311Domain d3g58a_: 3g58 A: [210377]
      automated match to d1f0ja_
      complexed with 988, edo, mg, so4, zn
    2. 2342312Domain d3g58b_: 3g58 B: [210378]
      automated match to d1f0ja_
      complexed with 988, edo, mg, so4, zn
    3. 2342313Domain d3g58c_: 3g58 C: [210379]
      automated match to d1f0ja_
      complexed with 988, edo, mg, so4, zn
    4. 2342314Domain d3g58d_: 3g58 D: [210380]
      automated match to d1f0ja_
      complexed with 988, edo, mg, so4, zn
  27. Domain(s) for 3iad:
    1. 2342390Domain d3iada_: 3iad A: [232567]
      automated match to d3iadc_
      complexed with 15x, epe, mg, zn
    2. 2342391Domain d3iadb_: 3iad B: [232568]
      automated match to d3iadd_
      complexed with 15x, epe, mg, zn
    3. 2342392Domain d3iadc_: 3iad C: [211553]
      automated match to d1f0ja_
      complexed with 15x, epe, mg, zn
    4. 2342393Domain d3iadd_: 3iad D: [211554]
      automated match to d1f0ja_
      complexed with 15x, epe, mg, zn
  28. Domain(s) for 3iak:
  29. Domain(s) for 3k4s:
  30. Domain(s) for 3sl3:
    1. 2342362Domain d3sl3a_: 3sl3 A: [216456]
      automated match to d1f0ja_
      complexed with dms, edo, epe, peg, po4, zn
    2. 2342363Domain d3sl3b_: 3sl3 B: [233543]
      automated match to d2fm0a_
      complexed with dms, edo, epe, peg, po4, zn
    3. 2342364Domain d3sl3c_: 3sl3 C: [233542]
      automated match to d2fm0a_
      complexed with dms, edo, epe, peg, po4, zn
    4. 2342365Domain d3sl3d_: 3sl3 D: [233544]
      automated match to d2fm0a_
      complexed with dms, edo, epe, peg, po4, zn
  31. Domain(s) for 3sl4:
    1. 2342352Domain d3sl4a_: 3sl4 A: [216457]
      automated match to d1f0ja_
      complexed with dms, edo, epe, jn4, peg, po4, zn
    2. 2342353Domain d3sl4b_: 3sl4 B: [233546]
      automated match to d2fm0a_
      complexed with dms, edo, epe, jn4, peg, po4, zn
    3. 2342354Domain d3sl4c_: 3sl4 C: [233545]
      automated match to d2fm0a_
      complexed with dms, edo, epe, jn4, peg, po4, zn
    4. 2342355Domain d3sl4d_: 3sl4 D: [233547]
      automated match to d2fm0a_
      complexed with dms, edo, epe, jn4, peg, po4, zn
  32. Domain(s) for 3sl5:
    1. 2342406Domain d3sl5a_: 3sl5 A: [216458]
      automated match to d1f0ja_
      complexed with dms, edo, epe, j25, zn
    2. 2342407Domain d3sl5b_: 3sl5 B: [233548]
      automated match to d3sl5a_
      complexed with dms, edo, epe, j25, zn
    3. 2342408Domain d3sl5c_: 3sl5 C: [233549]
      automated match to d3sl5a_
      complexed with dms, edo, epe, j25, zn
    4. 2342409Domain d3sl5d_: 3sl5 D: [233550]
      automated match to d3sl5a_
      complexed with dms, edo, epe, j25, zn
  33. Domain(s) for 3sl6:
    1. 2342367Domain d3sl6a_: 3sl6 A: [216459]
      automated match to d1f0ja_
      complexed with dms, edo, epe, jn8, zn
    2. 2342368Domain d3sl6b_: 3sl6 B: [233552]
      automated match to d2fm0a_
      complexed with dms, edo, epe, jn8, zn
    3. 2342369Domain d3sl6c_: 3sl6 C: [233553]
      automated match to d2fm0a_
      complexed with dms, edo, epe, jn8, zn
    4. 2342370Domain d3sl6d_: 3sl6 D: [233551]
      automated match to d2fm0a_
      complexed with dms, edo, epe, jn8, zn
  34. Domain(s) for 3sl8:
    1. 2342394Domain d3sl8a_: 3sl8 A: [216460]
      automated match to d1f0ja_
      complexed with dms, edo, jn7, peg, po4, zn
    2. 2342395Domain d3sl8b_: 3sl8 B: [233556]
      automated match to d2fm0a_
      complexed with dms, edo, jn7, peg, po4, zn
    3. 2342396Domain d3sl8c_: 3sl8 C: [233557]
      automated match to d2fm0a_
      complexed with dms, edo, jn7, peg, po4, zn
    4. 2342397Domain d3sl8d_: 3sl8 D: [233558]
      automated match to d2fm0a_
      complexed with dms, edo, jn7, peg, po4, zn
  35. Domain(s) for 3v9b:
    1. 2342322Domain d3v9ba_: 3v9b A: [217725]
      automated match to d1oyna_
      complexed with ihm, zn
    2. 2342323Domain d3v9bb_: 3v9b B: [217726]
      automated match to d1oyna_
      complexed with ihm, zn
    3. 2342324Domain d3v9bc_: 3v9b C: [217727]
      automated match to d1oyna_
      complexed with ihm, zn
    4. 2342325Domain d3v9bd_: 3v9b D: [217728]
      automated match to d1oyna_
      complexed with ihm, zn
  36. Domain(s) for 4w1o:
  37. Domain(s) for 4wcu:
    1. 2342386Domain d4wcua_: 4wcu A: [264100]
      automated match to d3g58d_
      complexed with 3kq, mg, zn
    2. 2342387Domain d4wcub_: 4wcu B: [260285]
      automated match to d3g58d_
      complexed with 3kq, mg, zn
    3. 2342388Domain d4wcuc_: 4wcu C: [264101]
      automated match to d3g58d_
      complexed with 3kq, mg, zn
    4. 2342389Domain d4wcud_: 4wcu D: [264102]
      automated match to d3g58d_
      complexed with 3kq, mg, zn
  38. Domain(s) for 5k1i:
    1. 2342398Domain d5k1ia_: 5k1i A: [327395]
      automated match to d3g4ka_
      complexed with 6pt, mg, zn
    2. 2342399Domain d5k1ib_: 5k1i B: [327413]
      automated match to d3g4ka_
      complexed with 6pt, mg, zn
    3. 2342400Domain d5k1ic_: 5k1i C: [327412]
      automated match to d3g4ka_
      complexed with 6pt, mg, zn
    4. 2342401Domain d5k1id_: 5k1i D: [327376]
      automated match to d3g4ka_
      complexed with 6pt, mg, zn
    5. 2342402Domain d5k1ie_: 5k1i E: [327375]
      automated match to d3g4ka_
      complexed with 6pt, mg, zn
    6. 2342403Domain d5k1if_: 5k1i F: [327377]
      automated match to d3g4ka_
      complexed with 6pt, mg, zn
    7. 2342404Domain d5k1ig_: 5k1i G: [327423]
      automated match to d3g4ka_
      complexed with 6pt, mg, zn
    8. 2342405Domain d5k1ih_: 5k1i H: [327378]
      automated match to d3g4ka_
      complexed with 6pt, mg, zn
  39. Domain(s) for 5k32:
    1. 2342360Domain d5k32a_: 5k32 A: [332416]
      Other proteins in same PDB: d5k32b2
      automated match to d2qynb_
      complexed with 6q2, edo, mg, zn
    2. 2342361Domain d5k32b1: 5k32 B:88-411 [332409]
      Other proteins in same PDB: d5k32b2
      automated match to d2qynb_
      complexed with 6q2, edo, mg, zn
  40. Domain(s) for 5lbo:
  41. Domain(s) for 5wh5:
    1. 3054981Domain d5wh5a_: 5wh5 A: [355043]
      automated match to d3g4id_
      complexed with mg, r91, zn
    2. 3055018Domain d5wh5b_: 5wh5 B: [355080]
      automated match to d3g4id_
      complexed with mg, r91, zn
  42. Domain(s) for 5wqa:
    1. 2342372Domain d5wqaa_: 5wqa A: [330229]
      automated match to d3g58a_
      complexed with j20, mg, zn
    2. 2342373Domain d5wqab_: 5wqa B: [330303]
      automated match to d3g58a_
      complexed with j20, mg, zn
  43. Domain(s) for 6boj:
    1. 3056282Domain d6bojb_: 6boj B: [356344]
      automated match to d3iada_
      complexed with cl, e31, mg, mpd, zn
    2. 3056283Domain d6bojd_: 6boj D: [356345]
      automated match to d3iada_
      complexed with cl, e31, mg, mpd, zn
    3. 3056287Domain d6bojc_: 6boj C: [356349]
      automated match to d3iada_
      complexed with cl, e31, mg, mpd, zn
    4. 3056384Domain d6boja_: 6boj A: [356446]
      automated match to d3iada_
      complexed with cl, e31, mg, mpd, zn

More info for Species Human (Homo sapiens) [TaxId:9606] from a.211.1.2 Catalytic domain of cyclic nucleotide phosphodiesterase pde4d

Timeline for Species Human (Homo sapiens) [TaxId:9606] from a.211.1.2 Catalytic domain of cyclic nucleotide phosphodiesterase pde4d: