PDB entry 5lbo
View 5lbo on RCSB PDB site
Description: Crystal structure of human phosphodiesterase 4D2 catalytic domain with inhibitor NPD-001
Class: hydrolase
Keywords: Phosphodiesterase, hydrolase, cAMP hydrolysis, alternative splicing
Deposited on
2016-06-16, released
2018-03-14
The last revision prior to the SCOPe 2.08 freeze date was dated
2018-05-23, with a file datestamp of
2018-05-18.
Experiment type: XRAY
Resolution: 2.25 Å
R-factor: N/A
AEROSPACI score: 0.26
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: cAMP-specific 3',5'-cyclic phosphodiesterase 4D
Species: Homo sapiens [TaxId:9606]
Gene: PDE4D, DPDE3
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5lboa_ - Chain 'B':
Compound: cAMP-specific 3',5'-cyclic phosphodiesterase 4D
Species: Homo sapiens [TaxId:9606]
Gene: PDE4D, DPDE3
Database cross-references and differences (RAF-indexed):
- Chain 'C':
Compound: cAMP-specific 3',5'-cyclic phosphodiesterase 4D
Species: Homo sapiens [TaxId:9606]
Gene: PDE4D, DPDE3
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: cAMP-specific 3',5'-cyclic phosphodiesterase 4D
Species: Homo sapiens [TaxId:9606]
Gene: PDE4D, DPDE3
Database cross-references and differences (RAF-indexed):
- Heterogens: ZN, MG, EDO, DTT, 6M5, EPE, PEG, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5lboA (A:)
gshmiprfgvkteqedvlakeledvnkwglhvfriaelsgnrpltvimhtifqerdllkt
fkipvdtlitylmtledhyhadvayhnnihaadvvqsthvllstpaleavftdleilaai
fasaihdvdhpgvsnqflintnselalmyndssvlenhhlavgfkllqeencdifqnltk
kqrqslrkmvidivlatdmskhmnlladlktmvetkkvtssgvllldnysdriqvlqnmv
hcadlsnptkplqlyrqwtdrimeeffrqgdrerergmeispmcdkhnasveksqvgfid
yivhplwetwadlvhpdaqdildtlednrewyqstipqspspapddpeegrqgqtekfqf
eltl
Sequence, based on observed residues (ATOM records): (download)
>5lboA (A:)
fgvkteqedvlakeledvnkwglhvfriaelsgnrpltvimhtifqerdllktfkipvdt
litylmtledhyhadvayhnnihaadvvqsthvllstpaleavftdleilaaifasaihd
vdhpgvsnqflintnselalmyndssvlenhhlavgfkllqeencdifqnltkkqrqslr
kmvidivlatdmskhmnlladlktmvetkkvtssgvllldnysdriqvlqnmvhcadlsn
ptkplqlyrqwtdrimeeffrqgdrerergmeispmcdkhnasveksqvgfidyivhplw
etwadlvhpdaqdildtlednrewyqstip
- Chain 'B':
No sequence available.
- Chain 'C':
No sequence available.
- Chain 'D':
No sequence available.