SCOPe 2.08: Species: Escherichia coli [TaxId: 562]

Lineage for Species: Escherichia coli [TaxId: 562]

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest

Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families)
Similar in architecture to the superfamily I but partly differs in topology
Family c.94.1.1: Phosphate binding protein-like [53851] (45 proteins)
has additional insertions and/or extensions that are not grouped together
Protein D-maltodextrin-binding protein, MBP [53862] (5 species)
contains a few additional helices in the C-terminal extension; homologous to thiaminase I
Species Escherichia coli [TaxId:562] [53863] (69 PDB entries)
Uniprot P02928

PDB entries in Species: Escherichia coli [TaxId: 562]:

Domain(s) for 1a7l:
1. Domain d1a7la_: 1a7l A: [35787]
  insertion/deletion mutant with an inserted B-cell epitope from hepatitis B virus
  has additional insertions and/or extensions that are not grouped together
2. Domain d1a7lb_: 1a7l B: [35788]
  insertion/deletion mutant with an inserted B-cell epitope from hepatitis B virus
  has additional insertions and/or extensions that are not grouped together
3. Domain d1a7lc_: 1a7l C: [35789]
  insertion/deletion mutant with an inserted B-cell epitope from hepatitis B virus
  has additional insertions and/or extensions that are not grouped together
Domain(s) for 1anf:
- Domain d1anfa_: 1anf A: [35776]
  has additional insertions and/or extensions that are not grouped together
Domain(s) for 1dmb:
- Domain d1dmba_: 1dmb A: [35779]
  has additional insertions and/or extensions that are not grouped together
Domain(s) for 1ez9:
1. Domain d1ez9a_: 1ez9 A: [64925]
  has additional insertions and/or extensions that are not grouped together
2. Domain d1ez9b_: 1ez9 B: [64926]
  has additional insertions and/or extensions that are not grouped together
Domain(s) for 1ezo:
- Domain d1ezoa_: 1ezo A: [59539]
  has additional insertions and/or extensions that are not grouped together
Domain(s) for 1ezp:
- Domain d1ezpa_: 1ezp A: [59540]
  has additional insertions and/or extensions that are not grouped together
Domain(s) for 1fqa:
- Domain d1fqaa1: 1fqa A:2-370 [59984]
  Other proteins in same PDB: d1fqaa2
  has additional insertions and/or extensions that are not grouped together
Domain(s) for 1fqb:
- Domain d1fqba1: 1fqb A:2-370 [59985]
  Other proteins in same PDB: d1fqba2
  has additional insertions and/or extensions that are not grouped together
Domain(s) for 1fqc:
- Domain d1fqca1: 1fqc A:2-370 [59986]
  Other proteins in same PDB: d1fqca2
  has additional insertions and/or extensions that are not grouped together
Domain(s) for 1fqd:
- Domain d1fqda1: 1fqd A:2-370 [59987]
  Other proteins in same PDB: d1fqda2
  has additional insertions and/or extensions that are not grouped together

Domain(s) for 1hsj:

Domain d1hsja2: 1hsj A:1-372 [61238]
Other proteins in same PDB: d1hsja1, d1hsjb1
fusion protein with SarR
protein/DNA complex; complexed with glc
has additional insertions and/or extensions that are not grouped together

Domain d1hsjb2: 1hsj B:1-372 [61240]
Other proteins in same PDB: d1hsja1, d1hsjb1
fusion protein with SarR
protein/DNA complex; complexed with glc
has additional insertions and/or extensions that are not grouped together

Domain(s) for 1iud:
- Domain d1iuda_: 1iud A: [35786]
  insertion/deletion mutant with an inserted B-cell epitope from hepatitis B virus
  mutant
  has additional insertions and/or extensions that are not grouped together
Domain(s) for 1jvx:
- Domain d1jvxa_: 1jvx A: [63307]
  has additional insertions and/or extensions that are not grouped together
Domain(s) for 1jvy:
- Domain d1jvya_: 1jvy A: [63308]
  has additional insertions and/or extensions that are not grouped together
Domain(s) for 1jw4:
- Domain d1jw4a_: 1jw4 A: [67374]
  has additional insertions and/or extensions that are not grouped together
Domain(s) for 1jw5:
- Domain d1jw5a_: 1jw5 A: [67375]
  has additional insertions and/or extensions that are not grouped together
Domain(s) for 1lax:
1. Domain d1laxa_: 1lax A: [84576]
  mutant
  has additional insertions and/or extensions that are not grouped together
2. Domain d1laxc_: 1lax C: [84577]
  mutant
  has additional insertions and/or extensions that are not grouped together
Domain(s) for 1lls:
- Domain d1llsa_: 1lls A: [78096]
  complexed with xe
  has additional insertions and/or extensions that are not grouped together
Domain(s) for 1mdp:
1. Domain d1mdp1_: 1mdp 1: [35784]
  mutant
  has additional insertions and/or extensions that are not grouped together
2. Domain d1mdp2_: 1mdp 2: [35785]
  mutant
  has additional insertions and/or extensions that are not grouped together
Domain(s) for 1mdq:
- Domain d1mdqa_: 1mdq A: [35783]
  mutant
  has additional insertions and/or extensions that are not grouped together
Domain(s) for 1mg1:
- Domain d1mg1a1: 1mg1 A:6-370 [35790]
  Other proteins in same PDB: d1mg1a2
  chimera with HTLV-1 gp21 ectodomain
  complexed with cl
  has additional insertions and/or extensions that are not grouped together
Domain(s) for 1mh3:
- Domain d1mh3a2: 1mh3 A:1-366 [79113]
  Other proteins in same PDB: d1mh3a1
  chimera with yeast a1 homeodomain
  has additional insertions and/or extensions that are not grouped together
Domain(s) for 1mh4:
- Domain d1mh4a2: 1mh4 A:1-366 [79115]
  Other proteins in same PDB: d1mh4a1
  chimera with yeast a1 homeodomain
  has additional insertions and/or extensions that are not grouped together
Domain(s) for 1mpb:
- Domain d1mpba_: 1mpb A: [35780]
  mutant
  has additional insertions and/or extensions that are not grouped together
Domain(s) for 1mpc:
- Domain d1mpca_: 1mpc A: [35781]
  mutant
  has additional insertions and/or extensions that are not grouped together
Domain(s) for 1mpd:
- Domain d1mpda_: 1mpd A: [35782]
  mutant
  has additional insertions and/or extensions that are not grouped together
Domain(s) for 1n3w:
- Domain d1n3wa_: 1n3w A: [91608]
  has additional insertions and/or extensions that are not grouped together
Domain(s) for 1n3x:
- Domain d1n3xa_: 1n3x A: [91609]
  has additional insertions and/or extensions that are not grouped together
Domain(s) for 1nl5:
- Domain d1nl5a_: 1nl5 A: [91953]
  complexed with zn
  has additional insertions and/or extensions that are not grouped together

Domain(s) for 1nmu:

Domain d1nmua1: 1nmu A:3-366 [80665]
Other proteins in same PDB: d1nmua2, d1nmub_, d1nmuc2, d1nmud_
chimera with yeast L30e ribosomal protein
has additional insertions and/or extensions that are not grouped together

Domain d1nmuc1: 1nmu C:3-366 [80667]
Other proteins in same PDB: d1nmua2, d1nmub_, d1nmuc2, d1nmud_
chimera with yeast L30e ribosomal protein
has additional insertions and/or extensions that are not grouped together

Domain(s) for 1omp:
- Domain d1ompa_: 1omp A: [35778]
  has additional insertions and/or extensions that are not grouped together
Domain(s) for 1peb:
- Domain d1peba_: 1peb A: [94597]
  has additional insertions and/or extensions that are not grouped together

Domain(s) for 1r6z:

Domain d1r6za2: 1r6z A:1-371 [97170]
Other proteins in same PDB: d1r6za1, d1r6zp1, d1r6zz1
chimera with a PAZ domain
complexed with ni
has additional insertions and/or extensions that are not grouped together

Domain d1r6zp2: 1r6z P:1-371 [97172]
Other proteins in same PDB: d1r6za1, d1r6zp1, d1r6zz1
chimera with a PAZ domain
complexed with ni
has additional insertions and/or extensions that are not grouped together

Domain d1r6zz2: 1r6z Z:2-371 [97174]
Other proteins in same PDB: d1r6za1, d1r6zp1, d1r6zz1
chimera with a PAZ domain
complexed with ni
has additional insertions and/or extensions that are not grouped together

Domain(s) for 1svx:
- Domain d1svxb1: 1svx B:5-366 [106059]
  Other proteins in same PDB: d1svxa1, d1svxa2, d1svxb2
  has additional insertions and/or extensions that are not grouped together
Domain(s) for 1t0k:
- Domain d1t0ka1: 1t0k A:5-366 [106214]
  Other proteins in same PDB: d1t0ka2, d1t0kb_
  protein/RNA complex
  has additional insertions and/or extensions that are not grouped together
Domain(s) for 1y4c:
- Domain d1y4ca1: 1y4c A:4-370 [264218]
  has additional insertions and/or extensions that are not grouped together
Domain(s) for 1ytv:
1. Domain d1ytva_: 1ytv A: [124016]
  automated match to d1anf__
  has additional insertions and/or extensions that are not grouped together
2. Domain d1ytvb_: 1ytv B: [124017]
  automated match to d1anf__
  has additional insertions and/or extensions that are not grouped together
Domain(s) for 1ziu:
- Domain d1ziua1: 1ziu A:1-370 [125138]
  complexed with ni
  has additional insertions and/or extensions that are not grouped together
Domain(s) for 1zjl:
- Domain d1zjla_: 1zjl A: [125152]
  automated match to d1anf__
  complexed with zn
  has additional insertions and/or extensions that are not grouped together
Domain(s) for 1zkb:
- Domain d1zkba_: 1zkb A: [125181]
  automated match to d1anf__
  has additional insertions and/or extensions that are not grouped together
Domain(s) for 1zmg:
- Domain d1zmga_: 1zmg A: [125362]
  automated match to d1anf__
  complexed with cu
  has additional insertions and/or extensions that are not grouped together
Domain(s) for 2d21:
- Domain d2d21a_: 2d21 A: [131155]
  automated match to d3mbpa_
  has additional insertions and/or extensions that are not grouped together
Domain(s) for 2h25:
- Domain d2h25a_: 2h25 A: [135989]
  automated match to d3mbpa_
  has additional insertions and/or extensions that are not grouped together
Domain(s) for 2klf:
- Domain d2klfa_: 2klf A: [242551]
  automated match to d3mbpa_
  has additional insertions and/or extensions that are not grouped together
Domain(s) for 2n44:
- Domain d2n44a_: 2n44 A: [274468]
  automated match to d1jvya_
  has additional insertions and/or extensions that are not grouped together
Domain(s) for 2n45:
- Domain d2n45a_: 2n45 A: [274467]
  automated match to d1jvya_
  has additional insertions and/or extensions that are not grouped together

Domain(s) for 2nvu:

Domain d2nvub2: 2nvu B:1002-1367 [138662]
Other proteins in same PDB: d2nvua_, d2nvub1, d2nvuc1, d2nvui_, d2nvuj_
automatically matched to d1mh3a2
complexed with atp, mg, zn
has additional insertions and/or extensions that are not grouped together

Domain(s) for 2r6g:

Domain d2r6ge_: 2r6g E: [151608]
Other proteins in same PDB: d2r6ga1, d2r6ga2, d2r6ga3, d2r6gb1, d2r6gb2, d2r6gb3, d2r6gf1, d2r6gf2, d2r6gg1
automated match to d1anfa_
complexed with atp
has additional insertions and/or extensions that are not grouped together

Domain(s) for 2v93:
- Domain d2v93a_: 2v93 A: [243849]
  automated match to d3mbpa_
  complexed with mxt
  has additional insertions and/or extensions that are not grouped together
Domain(s) for 3mbp:
- Domain d3mbpa_: 3mbp A: [35775]
  has additional insertions and/or extensions that are not grouped together

Domain(s) for 3pgf:

Domain d3pgfa_: 3pgf A: [214767]
Other proteins in same PDB: d3pgfh_, d3pgfl1, d3pgfl2
automated match to d1iuda_
complexed with gol, imd
has additional insertions and/or extensions that are not grouped together

Domain(s) for 3puy:

Domain d3puye1: 3puy E:1-370 [248662]
Other proteins in same PDB: d3puya1, d3puya2, d3puya3, d3puyb1, d3puyb2, d3puye2, d3puyf1, d3puyf2, d3puyg_
automated match to d3ruma_
complexed with anp, mg, pgv
has additional insertions and/or extensions that are not grouped together

Domain(s) for 3puz:

Domain d3puze_: 3puz E: [183986]
Other proteins in same PDB: d3puza1, d3puza2, d3puzb1, d3puzb2, d3puzf1, d3puzf2, d3puzg_
automated match to d1anfa_
complexed with anp, mg, pgv
has additional insertions and/or extensions that are not grouped together

Domain(s) for 3pv0:

Domain d3pv0e_: 3pv0 E: [248670]
Other proteins in same PDB: d3pv0a1, d3pv0a2, d3pv0b1, d3pv0b2, d3pv0f1, d3pv0f2, d3pv0g_
automated match to d3mbpa_
complexed with pgv
has additional insertions and/or extensions that are not grouped together

Domain(s) for 3ser:

Domain d3sera1: 3ser A:2-359 [216364]
Other proteins in same PDB: d3sera2, d3serc2
automated match to d1a7lc_
complexed with ca, cl, zn
has additional insertions and/or extensions that are not grouped together

Domain d3serc1: 3ser C:2-359 [216365]
Other proteins in same PDB: d3sera2, d3serc2
automated match to d1a7lc_
complexed with ca, cl, zn
has additional insertions and/or extensions that are not grouped together

Domain(s) for 3ses:

Domain d3sesa1: 3ses A:2-359 [216366]
Other proteins in same PDB: d3sesa2, d3sesc2
automated match to d1a7lc_
complexed with cl, cu
has additional insertions and/or extensions that are not grouped together

Domain d3sesc1: 3ses C:2-359 [216367]
Other proteins in same PDB: d3sesa2, d3sesc2
automated match to d1a7lc_
complexed with cl, cu
has additional insertions and/or extensions that are not grouped together

Domain(s) for 3set:
1. Domain d3seta1: 3set A:2-359 [216368]
  Other proteins in same PDB: d3seta2, d3setc2
  automated match to d1a7lc_
  complexed with ni
  has additional insertions and/or extensions that are not grouped together
2. Domain d3setc1: 3set C:3-359 [216369]
  Other proteins in same PDB: d3seta2, d3setc2
  automated match to d1a7lc_
  complexed with ni
  has additional insertions and/or extensions that are not grouped together

Domain(s) for 3seu:

Domain d3seua1: 3seu A:5-359 [216370]
Other proteins in same PDB: d3seua2
automated match to d1a7lc_
complexed with act, gol, zn
has additional insertions and/or extensions that are not grouped together

Domain(s) for 3sev:

Domain d3seva1: 3sev A:2-359 [249417]
Other proteins in same PDB: d3seva2, d3sevc2, d3seve2
automated match to d3pgfa_
complexed with cl, zn
has additional insertions and/or extensions that are not grouped together

Domain d3sevc1: 3sev C:2-359 [249418]
Other proteins in same PDB: d3seva2, d3sevc2, d3seve2
automated match to d3pgfa_
complexed with cl, zn
has additional insertions and/or extensions that are not grouped together

Domain d3seve1: 3sev E:2-359 [249419]
Other proteins in same PDB: d3seva2, d3sevc2, d3seve2
automated match to d3pgfa_
complexed with cl, zn
has additional insertions and/or extensions that are not grouped together

Domain(s) for 3sew:
- Domain d3sewa1: 3sew A:1-359 [216371]
  Other proteins in same PDB: d3sewa2
  automated match to d1a7lc_
  complexed with cl, gol, zn
  has additional insertions and/or extensions that are not grouped together

Domain(s) for 3sex:

Domain d3sexa1: 3sex A:2-359 [216372]
Other proteins in same PDB: d3sexa2, d3sexc2
automated match to d1a7lc_
complexed with iod, ni
has additional insertions and/or extensions that are not grouped together

Domain d3sexc1: 3sex C:2-359 [216373]
Other proteins in same PDB: d3sexa2, d3sexc2
automated match to d1a7lc_
complexed with iod, ni
has additional insertions and/or extensions that are not grouped together

Domain(s) for 3sey:

Domain d3seya1: 3sey A:1-359 [216374]
Other proteins in same PDB: d3seya2, d3seyc2, d3seye2
automated match to d1a7lc_
complexed with act, gol, zn
has additional insertions and/or extensions that are not grouped together

Domain d3seyc1: 3sey C:1-359 [216375]
Other proteins in same PDB: d3seya2, d3seyc2, d3seye2
automated match to d1a7lc_
complexed with act, gol, zn
has additional insertions and/or extensions that are not grouped together

Domain d3seye1: 3sey E:1-359 [216376]
Other proteins in same PDB: d3seya2, d3seyc2, d3seye2
automated match to d1a7lc_
complexed with act, gol, zn
has additional insertions and/or extensions that are not grouped together

Domain(s) for 4jkm:

Domain d4jkmd1: 4jkm D:18-375 [259655]
Other proteins in same PDB: d4jkma1, d4jkma2, d4jkma3, d4jkma4, d4jkmb1, d4jkmb2, d4jkmb3, d4jkmb4, d4jkmd2
automated match to d3pgfa_
has additional insertions and/or extensions that are not grouped together

Domain(s) for 4mbp:
- Domain d4mbpa_: 4mbp A: [35777]
  has additional insertions and/or extensions that are not grouped together

Domain(s) for 5bk2:

Domain d5bk2a1: 5bk2 A:1-366 [346610]
Other proteins in same PDB: d5bk2a2, d5bk2b2, d5bk2c_, d5bk2d1, d5bk2d2, d5bk2h_, d5bk2l1, d5bk2l2
automated match to d1jvya_
complexed with cl, gol, po4
has additional insertions and/or extensions that are not grouped together

Domain d5bk2b1: 5bk2 B:1-366 [346728]
Other proteins in same PDB: d5bk2a2, d5bk2b2, d5bk2c_, d5bk2d1, d5bk2d2, d5bk2h_, d5bk2l1, d5bk2l2
automated match to d1jvya_
complexed with cl, gol, po4
has additional insertions and/or extensions that are not grouped together

Domain(s) for 5cbn:
- Domain d5cbnb_: 5cbn B: [312729]
  automated match to d1jvya_
  complexed with eyc
  has additional insertions and/or extensions that are not grouped together
Domain(s) for 5gru:
- Domain d5grua_: 5gru A: [323954]
  Other proteins in same PDB: d5gruh1, d5gruh2, d5grul1, d5grul2
  automated match to d5e7ua_
  has additional insertions and/or extensions that are not grouped together
Domain(s) for 5i69:
- Domain d5i69a_: 5i69 A: [315084]
  automated match to d3q28a_
  complexed with so4; mutant
  has additional insertions and/or extensions that are not grouped together

Domain(s) for 6cxs:

Domain d6cxsd1: 6cxs D:18-376 [367700]
Other proteins in same PDB: d6cxsa1, d6cxsa2, d6cxsa3, d6cxsa4, d6cxsb1, d6cxsb2, d6cxsb3, d6cxsb4, d6cxsd2
automated match to d1jvya_
complexed with fjv
has additional insertions and/or extensions that are not grouped together

More info for Species Escherichia coli [TaxId:562] from c.94.1.1 D-maltodextrin-binding protein, MBP

Timeline for Species Escherichia coli [TaxId:562] from c.94.1.1 D-maltodextrin-binding protein, MBP:

Species Escherichia coli [TaxId:562] from c.94.1.1 D-maltodextrin-binding protein, MBP first appeared (with stable ids) in SCOP 1.55
Species Escherichia coli [TaxId:562] from c.94.1.1 D-maltodextrin-binding protein, MBP appears in SCOPe 2.07