SCOPe 2.08: Domain d1t0ka1: 1t0k A:5-366

Lineage for d1t0ka1 (1t0k A:5-366)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
   consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
   mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest

4. Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families)
   Similar in architecture to the superfamily I but partly differs in topology

5. Family c.94.1.1: Phosphate binding protein-like [53851] (45 proteins)
   has additional insertions and/or extensions that are not grouped together
   

6. Protein D-maltodextrin-binding protein, MBP [53862] (5 species)
   contains a few additional helices in the C-terminal extension; homologous to thiaminase I

7. Species Escherichia coli [TaxId:562] [53863] (69 PDB entries)
   Uniprot P02928

8. Domain d1t0ka1: 1t0k A:5-366 [106214]
   Other proteins in same PDB: d1t0ka2, d1t0kb_
   protein/RNA complex
   has additional insertions and/or extensions that are not grouped together

Details for d1t0ka1

PDB Entry: 1t0k, 3.24 Å

PDB Description: joint x-ray and nmr refinement of yeast l30e-mrna complex

PDB Compounds: (A:) Maltose-binding periplasmic protein

SCOPe Domain Sequences for d1t0ka1:

Sequence; same for both SEQRES and ATOM records:

>d1t0ka1 c.94.1.1 (A:5-366) D-maltodextrin-binding protein, MBP {Escherichia coli [TaxId: 562]}
gklviwingdkgynglaevgkkfekdtgikvtvehpdkleekfpqvaatgdgpdiifwah
drfggyaqsgllaeitpdkafqdklypftwdavryngkliaypiavealsliynkdllpn
ppktweeipaldkelkakgksalmfnlqepyftwpliaadggyafkyengkydikdvgvd
nagakagltflvdliknkhmnadtdysiaeaafnkgetamtingpwawsnidtskvnygv
tvlptfkgqpskpfvgvlsaginaaspnkelakeflenylltdegleavnkdkplgaval
ksyeeelakdpriaatmenaqkgeimpnipqmsafwyavrtavinaasgrqtvdealkda
qt

Timeline for d1t0ka1:

• d1t0ka1 first appeared in SCOP 1.69, called d1t0ka_
  
• d1t0ka1 appears in SCOPe 2.07