Lineage for Family c.94.1.1: Phosphate binding protein-like

  1. Root: SCOPe 2.08
  2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
    consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
    mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest
  4. Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families) (S)
    Similar in architecture to the superfamily I but partly differs in topology
  5. Family c.94.1.1: Phosphate binding protein-like [53851] (45 proteins)
    has additional insertions and/or extensions that are not grouped together

Proteins:

  1. ABC transporter, periplasmic substrate-binding protein VCA0807 [117747] (1 species)
  2. Alginate-binding periplasmic protein AlgQ1 [142808] (1 species)
  3. Alginate-binding periplasmic protein AlgQ2 [69624] (1 species)
  4. ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain [82559] (5 species)
    there is an additional C-terminal allosteric domain in some species
    1. Species Escherichia coli [TaxId:562] [102698] (2 PDB entries)
    2. Species Lactococcus lactis [TaxId:1358] [142804] (2 PDB entries)
      Uniprot Q02129 1-204
    3. Species Mycobacterium tuberculosis [TaxId:1773] [82560] (2 PDB entries)
    4. Species Thermotoga maritima [TaxId:2336] [102699] (3 PDB entries)
      Uniprot Q9X0D2
    5. Species Thermus thermophilus [TaxId:274] [142805] (1 PDB entry)
      Uniprot Q5SM15 1-206
  5. Bicarbonate transporter CmpA [310784] (1 species)
    member of Pfam PF13379
  6. Cofactor-binding fragment of LysR-type protein CysB [53886] (1 species)
  7. D-maltodextrin-binding protein, MBP [53862] (5 species)
    contains a few additional helices in the C-terminal extension; homologous to thiaminase I
    1. Species Alicyclobacillus acidocaldarius [TaxId:405212] [102690] (3 PDB entries)
    2. Species Escherichia coli K-12 [TaxId:83333] [159806] (14 PDB entries)
    3. Species Escherichia coli [TaxId:562] [53863] (69 PDB entries)
      Uniprot P02928
    4. Species Pyrococcus furiosus [TaxId:2261] [53864] (1 PDB entry)
    5. Species Thermococcus litoralis [TaxId:2265] [64191] (1 PDB entry)
      trehalose maltose-binding protein
  8. Dipeptide-binding protein [53870] (1 species)
    similar domain organization to oligopeptide-binding protein, OPPA
  9. Ferric-binding protein FbpA [53867] (7 species)
    1. Species Bordetella pertussis [TaxId:520] [117745] (1 PDB entry)
      Uniprot Q7VXW9 31-349
    2. Species Campylobacter jejuni [TaxId:197] [117744] (2 PDB entries)
      Uniprot Q9PIV4 17-334
    3. Species Haemophilus influenzae [TaxId:727] [53868] (12 PDB entries)
    4. Species Mannheimia haemolytica [TaxId:75985] [102691] (3 PDB entries)
      Uniprot Q9Z4N6
    5. Species Neisseria gonorrhoeae [TaxId:485] [53869] (5 PDB entries)
      Uniprot Q50964 23-331
    6. Species Serratia marcescens, SfuA [TaxId:615] [117743] (1 PDB entry)
      Uniprot P21408 32-338
    7. Species Yersinia enterocolitica, YfuA [TaxId:630] [117742] (1 PDB entry)
      Uniprot Q56925 28-338
  10. Glutamate receptor ligand binding core [53881] (5 species)
    1. Species Human (Homo sapiens) [TaxId:9606] [189807] (8 PDB entries)
    2. Species Norway rat (Rattus norvegicus), GluR2 [TaxId:10116] [53882] (157 PDB entries)
    3. Species Norway rat (Rattus norvegicus), GluR5 [TaxId:10116] [142802] (5 PDB entries)
      Uniprot P22756 429-546,667-799! Uniprot P22756 433-544,682-815
    4. Species Norway rat (Rattus norvegicus), GluR6 [TaxId:10116] [142801] (3 PDB entries)
      Uniprot P42260 421-544,668-804! Uniprot P42260 429-544,667-806
    5. Species Synechocystis sp., GluR0 [TaxId:1143] [64192] (3 PDB entries)
  11. Glutamine-binding protein [53879] (1 species)
  12. Glycine betaine-binding periplasmic protein ProX [102702] (1 species)
  13. Histidine-binding protein [53872] (2 species)
    1. Species Escherichia coli [TaxId:562] [53873] (1 PDB entry)
    2. Species Salmonella typhimurium [TaxId:90371] [53874] (1 PDB entry)
  14. Hydrogen peroxide-inducible genes LysR-type activator OxyR, regulatory domain [64193] (1 species)
  15. Hypothetical protein AF1704 [142810] (1 species)
    member of Pfam PF02642 (DUF191)
  16. Hypothetical protein DR0370 [159814] (1 species)
  17. Hypothetical protein SCo4506 [159810] (1 species)
  18. Hypothetical protein TTHA1568 [142806] (1 species)
    member of Pfam PF02642 (DUF191)
  19. Hypothetical protein YhfZ [159812] (1 species)
  20. Hypothetical protein YliB [102692] (1 species)
    similar domain organization to oligo- and dipeptide-binding protein
  21. Lysine-,arginine-,ornithine-binding (LAO) protein [53856] (5 species)
    1. Species Salmonella enterica [TaxId:99287] [372546] (1 PDB entry)
    2. Species Salmonella typhimurium [TaxId:588858] [372567] (2 PDB entries)
    3. Species Salmonella typhimurium [TaxId:90371] [53857] (6 PDB entries)
    4. Species Salmonella typhimurium [TaxId:99287] [372533] (12 PDB entries)
    5. Species Salmonella choleraesuis [TaxId:28901] [419780] (1 PDB entry)
  22. LysR-type regulatory protein Cbl [142816] (1 species)
  23. LysR-type regulatory protein CbnR [89789] (1 species)
  24. LysR-type regulatory protein DntR [110748] (1 species)
  25. Molybdate-binding protein, ModA [53883] (3 species)
    1. Species Archaeoglobus fulgidus [TaxId:2234] [159807] (3 PDB entries)
      Uniprot O30142 32-342
    2. Species Azotobacter vinelandii [TaxId:354] [53885] (1 PDB entry)
    3. Species Escherichia coli [TaxId:562] [53884] (2 PDB entries)
  26. N-methyl-D-aspartate receptor subunit 1 [89787] (3 species)
    1. Species Human (Homo sapiens) [TaxId:9606] [314718] (10 PDB entries)
    2. Species Norway rat (Rattus norvegicus) [TaxId:10116] [89788] (33 PDB entries)
    3. Species Norway rat (Rattus norvegicus), subtype 2A [TaxId:10116] [142803] (1 PDB entry)
      Uniprot Q00959 404-539,661-801
  27. Nickel-binding periplasmic protein NikA [102694] (2 species)
    similar domain organization to oligo- and dipeptide-binding protein
    1. Species Brucella suis [TaxId:29461] [259856] (2 PDB entries)
    2. Species Escherichia coli [TaxId:562] [102695] (28 PDB entries)
  28. Nitrate-binding protein NtrA [310783] (1 species)
    member of Pfam PF13379
  29. Oligo-peptide binding protein (OPPA) [53852] (3 species)
    contains an additional alpha+beta domain inserted in the N-terminal domain
    1. Species Bacillus subtilis [TaxId:1423] [142799] (1 PDB entry)
      Uniprot P42061 40-543
    2. Species Salmonella typhimurium [TaxId:90371] [53853] (32 PDB entries)
    3. Species Thermotoga maritima [TaxId:2336] [142800] (3 PDB entries)
      Uniprot Q9X0V0 23-557
      TM1223
  30. Osmoprotection protein ProX [110750] (1 species)
    functionally related to the bacterial ProX
  31. Phosphate-binding protein [53860] (4 species)
    1. Species Escherichia coli [TaxId:562] [53861] (13 PDB entries)
    2. Species Mycobacterium tuberculosis [TaxId:1773] [110747] (1 PDB entry)
      Uniprot P15712
    3. Species Pseudomonas fluorescens [TaxId:216595] [189064] (1 PDB entry)
    4. Species Pseudomonas fluorescens [TaxId:294] [189065] (4 PDB entries)
  32. Porphobilinogen deaminase (hydroxymethylbilane synthase), N-terminal domain [53854] (1 species)
  33. Prephenate dehydratase [159808] (1 species)
  34. Probable LysR-type transcriptional regulator PA0477 [142812] (1 species)
  35. PstS-like phosphate-binding protein [159816] (1 species)
  36. Putative amino-acid transporter CjaA [142814] (1 species)
  37. Putative GluR0 ligand binding core [102696] (1 species)
  38. Putative lipoprotein (NlpA family) [102700] (2 species)
    aka PG110, TpN32
    1. Species Staphylococcus aureus [TaxId:1280] [102701] (1 PDB entry)
    2. Species Treponema pallidum [TaxId:160] [117746] (1 PDB entry)
      Uniprot O07950 28-267
  39. Putrescine receptor (PotF) [53877] (1 species)
  40. Sialic acid-binding protein SiaP [254345] (1 species)
    Pfam PF03480; TRAP transporter; homology to other Type II ESRs (Extracytoplasmic solute receptors) discussed in PubMed 16702222
  41. Spermidine/putrescine-binding protein PotD [53875] (1 species)
  42. Sulphate-binding protein [53858] (1 species)
  43. Thiaminase I [53865] (1 species)
    contains a few additional helices in the C-terminal extension; homologous to MBP
  44. TRAP dicarboxylate transporter [267666] (2 species)
    1. Species Polaromonas [TaxId:296591] [267752] (1 PDB entry)
    2. Species Rhodoferax ferrireducens [TaxId:338969] [267751] (2 PDB entries)
  45. automated matches [190140] (36 species)
    not a true protein
    1. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [226716] (1 PDB entry)
    2. Species Bordetella pertussis [TaxId:257313] [187275] (2 PDB entries)
    3. Species Bradyrhizobium sp. [TaxId:288000] [267971] (1 PDB entry)
    4. Species Burkholderia cepacia [TaxId:292] [255595] (2 PDB entries)
    5. Species Burkholderia pseudomallei [TaxId:272560] [338801] (1 PDB entry)
    6. Species Burkholderia sp. [TaxId:233098] [190010] (5 PDB entries)
    7. Species Deinococcus radiodurans [TaxId:243230] [367282] (1 PDB entry)
    8. Species Escherichia coli K-12 [TaxId:83333] [189211] (10 PDB entries)
    9. Species Escherichia coli [TaxId:536056] [255489] (2 PDB entries)
    10. Species Escherichia coli [TaxId:562] [189978] (3 PDB entries)
    11. Species Escherichia coli [TaxId:83333] [322769] (8 PDB entries)
    12. Species Escherichia coli [TaxId:83334] [340846] (3 PDB entries)
    13. Species Fruit fly (Drosophila melanogaster) [TaxId:7227] [323396] (2 PDB entries)
    14. Species Haemophilus influenzae [TaxId:71421] [372901] (2 PDB entries)
    15. Species Haemophilus influenzae [TaxId:727] [255670] (6 PDB entries)
    16. Species Human (Homo sapiens) [TaxId:9606] [189406] (17 PDB entries)
    17. Species Mycobacterium tuberculosis [TaxId:83332] [335655] (5 PDB entries)
    18. Species Norway rat (Rattus norvegicus) [TaxId:10116] [189278] (36 PDB entries)
    19. Species Pasteurella multocida [TaxId:1169409] [257948] (1 PDB entry)
    20. Species Pseudomonas aeruginosa [TaxId:287] [195694] (3 PDB entries)
    21. Species Pseudomonas fluorescens [TaxId:216595] [311288] (1 PDB entry)
    22. Species Pseudomonas fluorescens [TaxId:294] [311289] (1 PDB entry)
    23. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [407313] (1 PDB entry)
    24. Species Salmonella enterica [TaxId:28901] [375608] (2 PDB entries)
    25. Species Salmonella enterica [TaxId:90371] [340868] (1 PDB entry)
    26. Species Salmonella enterica [TaxId:99287] [227690] (7 PDB entries)
    27. Species Sphingomonas sp. [TaxId:90322] [186866] (5 PDB entries)
    28. Species Streptococcus pyogenes [TaxId:1314] [330460] (1 PDB entry)
    29. Species Tetrahymena thermophila [TaxId:312017] [386228] (1 PDB entry)
    30. Species Thermotoga maritima [TaxId:243274] [259690] (3 PDB entries)
    31. Species Unidentified prokaryotic [TaxId:2725] [228734] (3 PDB entries)
    32. Species Vibrio cholerae [TaxId:666] [341466] (1 PDB entry)
    33. Species Xanthomonas axonopodis [TaxId:190486] [332492] (1 PDB entry)
    34. Species Yersinia pestis [TaxId:214092] [188272] (2 PDB entries)
    35. Species Yersinia pestis [TaxId:377628] [311500] (1 PDB entry)
    36. Species Yersinia pestis [TaxId:632] [362279] (1 PDB entry)

More info for Family c.94.1.1: Phosphate binding protein-like

Timeline for Family c.94.1.1: Phosphate binding protein-like: