Lineage for Species: Escherichia coli [TaxId: 562]

  1. Root: SCOPe 2.08
  2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
    consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
    mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest
  4. Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families) (S)
    Similar in architecture to the superfamily I but partly differs in topology
  5. Family c.94.1.1: Phosphate binding protein-like [53851] (45 proteins)
    has additional insertions and/or extensions that are not grouped together
  6. Protein Nickel-binding periplasmic protein NikA [102694] (2 species)
    similar domain organization to oligo- and dipeptide-binding protein
  7. Species Escherichia coli [TaxId:562] [102695] (28 PDB entries)

PDB entries in Species: Escherichia coli [TaxId: 562]:

  1. Domain(s) for 1uiu:
    1. Domain d1uiua_: 1uiu A: [99434]
      has additional subdomain(s) that are not in the common domain
    2. Domain d1uiub_: 1uiu B: [99435]
      has additional subdomain(s) that are not in the common domain
  2. Domain(s) for 1uiv:
    1. Domain d1uiva_: 1uiv A: [99436]
      complexed with ni
      has additional subdomain(s) that are not in the common domain
    2. Domain d1uivb_: 1uiv B: [99437]
      complexed with ni
      has additional subdomain(s) that are not in the common domain
  3. Domain(s) for 1zlq:
    1. Domain d1zlqa1: 1zlq A:3-501 [125253]
      complexed with act, cl, dtt, edt, fe, gol, so4
      has additional subdomain(s) that are not in the common domain
    2. Domain d1zlqb_: 1zlq B: [125254]
      automated match to d1uiva_
      complexed with act, cl, dtt, edt, fe, gol, so4

      has additional subdomain(s) that are not in the common domain
  4. Domain(s) for 2noo:
    • Domain d2nooa_: 2noo A: [166320]
      automated match to d1zlqa1
      complexed with iod, ni; mutant

      has additional subdomain(s) that are not in the common domain
  5. Domain(s) for 3dp8:
    1. Domain d3dp8a_: 3dp8 A: [157821]
      automated match to d1zlqa1
      complexed with act, cl, gol, hct, ni, so4

      has additional subdomain(s) that are not in the common domain
    2. Domain d3dp8b_: 3dp8 B: [157822]
      automated match to d1zlqa1
      complexed with act, cl, gol, hct, ni, so4

      has additional subdomain(s) that are not in the common domain
    3. Domain d3dp8c_: 3dp8 C: [157823]
      automated match to d1zlqa1
      complexed with act, cl, gol, hct, ni, so4

      has additional subdomain(s) that are not in the common domain
  6. Domain(s) for 3e3k:
    1. Domain d3e3ka_: 3e3k A: [157991]
      automated match to d1zlqa1
      complexed with act, cl, gol, hct, so4

      has additional subdomain(s) that are not in the common domain
    2. Domain d3e3kb_: 3e3k B: [157992]
      automated match to d1zlqa1
      complexed with act, cl, gol, hct, so4

      has additional subdomain(s) that are not in the common domain
    3. Domain d3e3kc_: 3e3k C: [157993]
      automated match to d1zlqa1
      complexed with act, cl, gol, hct, so4

      has additional subdomain(s) that are not in the common domain
  7. Domain(s) for 3mvw:
    1. Domain d3mvwa_: 3mvw A: [181612]
      automated match to d1zlqa1
      complexed with act, bhz, cl, fe, gol, so4

      has additional subdomain(s) that are not in the common domain
    2. Domain d3mvwb_: 3mvw B: [181613]
      automated match to d1zlqa1
      complexed with act, bhz, cl, fe, gol, so4

      has additional subdomain(s) that are not in the common domain
  8. Domain(s) for 3mvx:
    1. Domain d3mvxa_: 3mvx A: [181614]
      automated match to d1zlqa1
      complexed with act, bhz, cl, dtu, dtv, fe2, gol, so4

      has additional subdomain(s) that are not in the common domain
    2. Domain d3mvxb_: 3mvx B: [181615]
      automated match to d1zlqa1
      complexed with act, bhz, cl, dtu, dtv, fe2, gol, so4

      has additional subdomain(s) that are not in the common domain
  9. Domain(s) for 3mvy:
    1. Domain d3mvya_: 3mvy A: [181616]
      automated match to d1zlqa1
      complexed with act, bhz, cl, fe, gol, per, so4

      has additional subdomain(s) that are not in the common domain
    2. Domain d3mvyb_: 3mvy B: [181617]
      automated match to d1zlqa1
      complexed with act, bhz, cl, fe, gol, per, so4

      has additional subdomain(s) that are not in the common domain
  10. Domain(s) for 3mvz:
    1. Domain d3mvza_: 3mvz A: [181618]
      automated match to d1zlqa1
      complexed with act, bhn, fe, gol, per, so4

      has additional subdomain(s) that are not in the common domain
    2. Domain d3mvzb_: 3mvz B: [181619]
      automated match to d1zlqa1
      complexed with act, bhn, fe, gol, per, so4

      has additional subdomain(s) that are not in the common domain
  11. Domain(s) for 3mw0:
    1. Domain d3mw0a_: 3mw0 A: [181620]
      automated match to d1zlqa1
      complexed with bhr, dtd, fe

      has additional subdomain(s) that are not in the common domain
    2. Domain d3mw0b_: 3mw0 B: [181621]
      automated match to d1zlqa1
      complexed with bhr, dtd, fe

      has additional subdomain(s) that are not in the common domain
  12. Domain(s) for 3mz9:
    1. Domain d3mz9a_: 3mz9 A: [181727]
      automated match to d1zlqa1
      complexed with act, bhn, cl, dtd, fe, gol, so4

      has additional subdomain(s) that are not in the common domain
    2. Domain d3mz9b_: 3mz9 B: [181728]
      automated match to d1zlqa1
      complexed with act, bhn, cl, dtd, fe, gol, so4

      has additional subdomain(s) that are not in the common domain
  13. Domain(s) for 3mzb:
    1. Domain d3mzba_: 3mzb A: [181729]
      automated match to d1zlqa1
      complexed with act, bhr, cl, dtd, fe, gol, so4

      has additional subdomain(s) that are not in the common domain
    2. Domain d3mzbb_: 3mzb B: [199910]
      automated match to d3mzba_
      complexed with act, bhr, cl, dtd, fe, gol, so4

      has additional subdomain(s) that are not in the common domain
  14. Domain(s) for 3qim:
    1. Domain d3qima_: 3qim A: [184405]
      automated match to d1zlqa1
      complexed with act, gol, so4

      has additional subdomain(s) that are not in the common domain
    2. Domain d3qimb_: 3qim B: [184406]
      automated match to d1zlqa1
      complexed with act, gol, so4

      has additional subdomain(s) that are not in the common domain
  15. Domain(s) for 4dcx:
    1. Domain d4dcxa_: 4dcx A: [219688]
      automated match to d1zlqa1
      complexed with act, gol, l2d, so4

      has additional subdomain(s) that are not in the common domain
    2. Domain d4dcxb_: 4dcx B: [219689]
      automated match to d1zlqa1
      complexed with act, gol, l2d, so4

      has additional subdomain(s) that are not in the common domain
  16. Domain(s) for 4dcy:
    1. Domain d4dcya_: 4dcy A: [219690]
      automated match to d1zlqa1
      complexed with act, gol, l2m, so4, unx

      has additional subdomain(s) that are not in the common domain
    2. Domain d4dcyb_: 4dcy B: [219691]
      automated match to d1zlqa1
      complexed with act, gol, l2m, so4, unx

      has additional subdomain(s) that are not in the common domain
  17. Domain(s) for 4i8c:
    1. Domain d4i8ca_: 4i8c A: [223009]
      automated match to d1zlqb_
      complexed with act, cl, gol, his, ni, so4

      has additional subdomain(s) that are not in the common domain
    2. Domain d4i8cb_: 4i8c B: [223010]
      automated match to d1zlqa1
      complexed with act, cl, gol, his, ni, so4

      has additional subdomain(s) that are not in the common domain
    3. Domain d4i8cc_: 4i8c C: [223011]
      automated match to d1zlqa1
      complexed with act, cl, gol, his, ni, so4

      has additional subdomain(s) that are not in the common domain
  18. Domain(s) for 4i9d:
    1. Domain d4i9da_: 4i9d A: [196854]
      automated match to d3e3kb_
      complexed with act, gol, l4d, so4

      has additional subdomain(s) that are not in the common domain
    2. Domain d4i9db_: 4i9d B: [196855]
      automated match to d3e3kb_
      complexed with act, gol, l4d, so4

      has additional subdomain(s) that are not in the common domain
  19. Domain(s) for 5l8d:
    1. Domain d5l8da_: 5l8d A: [332401]
      automated match to d1zlqa1
      complexed with 6rp, act, cl, cmo, edt, fe, gol, ru, so4

      has additional subdomain(s) that are not in the common domain
    2. Domain d5l8db_: 5l8d B: [332411]
      automated match to d1zlqa1
      complexed with 6rp, act, cl, cmo, edt, fe, gol, ru, so4

      has additional subdomain(s) that are not in the common domain
  20. Domain(s) for 5mwu:
    1. Domain d5mwua_: 5mwu A: [330092]
      automated match to d1zlqa1
      complexed with 6rp, act, cl, cmo, edt, fe, gol, ru, so4

      has additional subdomain(s) that are not in the common domain
    2. Domain d5mwub_: 5mwu B: [330209]
      automated match to d1zlqa1
      complexed with 6rp, act, cl, cmo, edt, fe, gol, ru, so4

      has additional subdomain(s) that are not in the common domain
  21. Domain(s) for 5on0:
    1. Domain d5on0a_: 5on0 A: [342835]
      automated match to d1zlqa1
      complexed with 9yh, act, cl, fe, gol, so4

      has additional subdomain(s) that are not in the common domain
    2. Domain d5on0b_: 5on0 B: [342846]
      automated match to d1zlqa1
      complexed with 9yh, act, cl, fe, gol, so4

      has additional subdomain(s) that are not in the common domain
  22. Domain(s) for 5on1:
    1. Domain d5on1a_: 5on1 A: [342896]
      automated match to d1zlqa1
      complexed with 9yk, act, cl, dtd, fe, gol, so4

      has additional subdomain(s) that are not in the common domain
    2. Domain d5on1b_: 5on1 B: [342859]
      automated match to d1zlqa1
      complexed with 9yk, act, cl, dtd, fe, gol, so4

      has additional subdomain(s) that are not in the common domain
  23. Domain(s) for 5on4:
    1. Domain d5on4a_: 5on4 A: [342822]
      automated match to d1zlqa1
      complexed with 9yk, fe, gol

      has additional subdomain(s) that are not in the common domain
    2. Domain d5on4b_: 5on4 B: [342820]
      automated match to d1zlqa1
      complexed with 9yk, fe, gol

      has additional subdomain(s) that are not in the common domain
  24. Domain(s) for 5on5:
    1. Domain d5on5a_: 5on5 A: [342814]
      automated match to d1zlqa1
      complexed with 9yh, act, cl, fe, gol

      has additional subdomain(s) that are not in the common domain
    2. Domain d5on5b_: 5on5 B: [342852]
      automated match to d1zlqa1
      complexed with 9yh, act, cl, fe, gol

      has additional subdomain(s) that are not in the common domain
  25. Domain(s) for 5on8:
    1. Domain d5on8a_: 5on8 A: [342809]
      automated match to d1zlqa1
      complexed with 9yh, act, cl, fe, gol, so4

      has additional subdomain(s) that are not in the common domain
    2. Domain d5on8b_: 5on8 B: [342808]
      automated match to d1zlqa1
      complexed with 9yh, act, cl, fe, gol, so4

      has additional subdomain(s) that are not in the common domain
  26. Domain(s) for 5on9:
    1. Domain d5on9a_: 5on9 A: [342847]
      automated match to d1zlqa1
      complexed with 9yh, act, cl, dtt, fe, gol

      has additional subdomain(s) that are not in the common domain
    2. Domain d5on9b_: 5on9 B: [342819]
      automated match to d1zlqa1
      complexed with 9yh, act, cl, dtt, fe, gol

      has additional subdomain(s) that are not in the common domain
  27. Domain(s) for 6r4q:
    1. Domain d6r4qa_: 6r4q A: [383387]
      automated match to d1zlqa1
      complexed with 6rp, act, cl, cmo, edt, fe, gol, ru

      has additional subdomain(s) that are not in the common domain
    2. Domain d6r4qb_: 6r4q B: [383360]
      automated match to d1zlqa1
      complexed with 6rp, act, cl, cmo, edt, fe, gol, ru

      has additional subdomain(s) that are not in the common domain
  28. Domain(s) for 7a0c:
    1. Domain d7a0ca_: 7a0c A: [394232]
      automated match to d1zlqa1
      complexed with act, cl, fe, gol, mg, qtt

      has additional subdomain(s) that are not in the common domain
    2. Domain d7a0cb_: 7a0c B: [394231]
      automated match to d1zlqa1
      complexed with act, cl, fe, gol, mg, qtt

      has additional subdomain(s) that are not in the common domain

More info for Species Escherichia coli [TaxId:562] from c.94.1.1 Nickel-binding periplasmic protein NikA

Timeline for Species Escherichia coli [TaxId:562] from c.94.1.1 Nickel-binding periplasmic protein NikA: