Lineage for Species: Norway rat (Rattus norvegicus) [TaxId: 10116]

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2144291Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
    consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
    mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest
  4. 2144292Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families) (S)
    Similar in architecture to the superfamily I but partly differs in topology
  5. 2144293Family c.94.1.1: Phosphate binding protein-like [53851] (45 protein domains)
  6. 2145191Protein automated matches [190140] (30 species)
    not a true protein
  7. 2145284Species Norway rat (Rattus norvegicus) [TaxId:10116] [189278] (37 PDB entries)

PDB entries in Species: Norway rat (Rattus norvegicus) [TaxId: 10116]:

  1. Domain(s) for 2uxa:
    1. 2145316Domain d2uxaa_: 2uxa A: [168209]
      automated match to d1lb8a_
      complexed with glu, zn
    2. 2145317Domain d2uxab_: 2uxa B: [168210]
      automated match to d1lb8a_
      complexed with glu, zn
    3. 2145318Domain d2uxac_: 2uxa C: [168211]
      automated match to d1lb8a_
      complexed with glu, zn
  2. Domain(s) for 2xx7:
    1. 2145307Domain d2xx7a1: 2xx7 A:3-262 [207393]
      Other proteins in same PDB: d2xx7a2, d2xx7b2
      automated match to d3tkda_
      complexed with 1nd, glu, so4, zn
    2. 2145308Domain d2xx7b1: 2xx7 B:3-262 [207394]
      Other proteins in same PDB: d2xx7a2, d2xx7b2
      automated match to d3tkda_
      complexed with 1nd, glu, so4, zn
    3. 2145309Domain d2xx7c_: 2xx7 C: [207395]
      Other proteins in same PDB: d2xx7a2, d2xx7b2
      automated match to d3tkda_
      complexed with 1nd, glu, so4, zn
  3. Domain(s) for 3dln:
  4. Domain(s) for 3dp4:
  5. Domain(s) for 3en3:
  6. Domain(s) for 3epe:
    1. 2145299Domain d3epea_: 3epe A: [175143]
      automated match to d1ftja_
      complexed with glu
    2. 2145300Domain d3epeb_: 3epe B: [175144]
      automated match to d1ftja_
      complexed with glu
  7. Domain(s) for 3fas:
    1. 2145285Domain d3fasa1: 3fas A:2-260 [175617]
      Other proteins in same PDB: d3fasa2, d3fasb2
      automated match to d1mm6a_
      complexed with glu, gol, so4
    2. 2145286Domain d3fasb1: 3fas B:2-260 [175618]
      Other proteins in same PDB: d3fasa2, d3fasb2
      automated match to d1mm6a_
      complexed with glu, gol, so4
  8. Domain(s) for 3fat:
    1. 2145296Domain d3fata1: 3fat A:2-259 [175619]
      Other proteins in same PDB: d3fata2, d3fatb2, d3fatc2
      automated match to d1mm6a_
      complexed with acy, amq, gol, so4
    2. 2145297Domain d3fatb1: 3fat B:2-259 [175620]
      Other proteins in same PDB: d3fata2, d3fatb2, d3fatc2
      automated match to d1mm6a_
      complexed with acy, amq, gol, so4
    3. 2145298Domain d3fatc1: 3fat C:2-260 [175621]
      Other proteins in same PDB: d3fata2, d3fatb2, d3fatc2
      automated match to d1mm6a_
      complexed with acy, amq, gol, so4
  9. Domain(s) for 3kei:
    1. 2145303Domain d3keia_: 3kei A: [179304]
      automated match to d1lbca_
      complexed with glu; mutant
    2. 2145304Domain d3keib_: 3kei B: [179305]
      automated match to d1lbca_
      complexed with glu; mutant
  10. Domain(s) for 3kfm:
  11. Domain(s) for 3lsw:
  12. Domain(s) for 3lsx:
  13. Domain(s) for 3m3f:
  14. Domain(s) for 3m3k:
    1. 2145293Domain d3m3ka_: 3m3k A: [180794]
      automated match to d1m5da_
      complexed with glu, zn
    2. 2145294Domain d3m3kc_: 3m3k C: [180795]
      automated match to d1m5da_
      complexed with glu, zn
    3. 2145295Domain d3m3ke_: 3m3k E: [180796]
      automated match to d1m5da_
      complexed with glu, zn
  15. Domain(s) for 3rt6:
  16. Domain(s) for 3rt8:
  17. Domain(s) for 4f1y:
    1. 2145290Domain d4f1ya_: 4f1y A: [195369]
      automated match to d3m3ka_
      complexed with cni, zn
    2. 2145291Domain d4f1yc_: 4f1y C: [195368]
      automated match to d3m3ka_
      complexed with cni, zn
  18. Domain(s) for 4f22:
  19. Domain(s) for 4f29:
  20. Domain(s) for 4f2o:
  21. Domain(s) for 4f2q:
  22. Domain(s) for 4f31:
    1. 2145313Domain d4f31b_: 4f31 B: [195272]
      automated match to d3m3ka_
      complexed with kai, zn; mutant
    2. 2145314Domain d4f31d_: 4f31 D: [195277]
      automated match to d3m3ka_
      complexed with kai, zn; mutant
  23. Domain(s) for 4f39:
  24. Domain(s) for 4f3b:
  25. Domain(s) for 4f3g:
  26. Domain(s) for 4h8j:
    1. 2293633Domain d4h8jc_: 4h8j C: [336934]
      automated match to d5ftia_
      complexed with edo, mes, so4
    2. 2293650Domain d4h8jb_: 4h8j B: [336951]
      automated match to d5ftia_
      complexed with edo, mes, so4
    3. 2293662Domain d4h8jd_: 4h8j D: [336963]
      automated match to d5ftia_
      complexed with edo, mes, so4
    4. 2293684Domain d4h8ja_: 4h8j A: [336985]
      automated match to d5ftia_
      complexed with edo, mes, so4
  27. Domain(s) for 5buu:
    1. 2269358Domain d5buua_: 5buu A: [312664]
      automated match to d2xhda_
      complexed with 4v6, edo, glu, so4
    2. 2269462Domain d5buub_: 5buu B: [312768]
      automated match to d2xhda_
      complexed with 4v6, edo, glu, so4
  28. Domain(s) for 5elv:
    1. 2273639Domain d5elvb1: 5elv B:3-263 [316940]
      Other proteins in same PDB: d5elva2, d5elvb2
      automated match to d5ftia_
      complexed with 5px, act, cl, glu, gol, peg, so4
    2. 2273645Domain d5elva1: 5elv A:3-263 [316946]
      Other proteins in same PDB: d5elva2, d5elvb2
      automated match to d5ftia_
      complexed with 5px, act, cl, glu, gol, peg, so4
  29. Domain(s) for 5fhm:
    1. 2271079Domain d5fhmb_: 5fhm B: [314384]
      automated match to d2xhda_
      complexed with 5xp, act, edo, gol, li, so4
    2. 2271097Domain d5fhma_: 5fhm A: [314402]
      automated match to d2xhda_
      complexed with 5xp, act, edo, gol, li, so4
  30. Domain(s) for 5fhn:
  31. Domain(s) for 5fho:
    1. 2271082Domain d5fhoa_: 5fho A: [314387]
      Other proteins in same PDB: d5fhod2
      automated match to d2xhda_
      complexed with 5xn, cl, edo, gol, pg4, so4
    2. 2271154Domain d5fhoc_: 5fho C: [314459]
      Other proteins in same PDB: d5fhod2
      automated match to d2xhda_
      complexed with 5xn, cl, edo, gol, pg4, so4
    3. 2271189Domain d5fhod1: 5fho D:3-261 [314494]
      Other proteins in same PDB: d5fhod2
      automated match to d2xhda_
      complexed with 5xn, cl, edo, gol, pg4, so4
    4. 2271256Domain d5fhob_: 5fho B: [314561]
      Other proteins in same PDB: d5fhod2
      automated match to d2xhda_
      complexed with 5xn, cl, edo, gol, pg4, so4
  32. Domain(s) for 5fth:
    1. 2271190Domain d5ftha_: 5fth A: [314495]
      automated match to d2xhda_
      complexed with glu, zn
    2. 2271206Domain d5fthb_: 5fth B: [314511]
      automated match to d2xhda_
      complexed with glu, zn
    3. 2271216Domain d5fthc_: 5fth C: [314521]
      automated match to d2xhda_
      complexed with glu, zn
  33. Domain(s) for 5fti:
    1. 2271185Domain d5ftib_: 5fti B: [314490]
      automated match to d2xhda_
      complexed with glu, gol, li, so4
    2. 2271283Domain d5ftia_: 5fti A: [314588]
      automated match to d2xhda_
      complexed with glu, gol, li, so4
  34. Domain(s) for 5jei:
  35. Domain(s) for 5ng9:
  36. Domain(s) for 5nih:
    1. 2293685Domain d5nihb_: 5nih B: [336986]
      Other proteins in same PDB: d5niha2
      automated match to d5ftia_
      complexed with 8ve, act, cl, gol, so4
    2. 2293725Domain d5niha1: 5nih A:3-262 [337026]
      Other proteins in same PDB: d5niha2
      automated match to d5ftia_
      complexed with 8ve, act, cl, gol, so4
  37. Domain(s) for 5ns9:
    1. 2295618Domain d5ns9b_: 5ns9 B: [338919]
      Other proteins in same PDB: d5ns9a2
      automated match to d5ftia_
      complexed with 1pe, glu, na, pg0, so4
    2. 2295624Domain d5ns9a1: 5ns9 A:3-263 [338925]
      Other proteins in same PDB: d5ns9a2
      automated match to d5ftia_
      complexed with 1pe, glu, na, pg0, so4

More info for Species Norway rat (Rattus norvegicus) [TaxId:10116] from c.94.1.1 automated matches

Timeline for Species Norway rat (Rattus norvegicus) [TaxId:10116] from c.94.1.1 automated matches: