SCOPe 2.08: Protein: Oligo-peptide binding protein (OPPA)

Lineage for Protein: Oligo-peptide binding protein (OPPA)

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest

Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families)
Similar in architecture to the superfamily I but partly differs in topology
Family c.94.1.1: Phosphate binding protein-like [53851] (45 proteins)
has additional insertions and/or extensions that are not grouped together
Protein Oligo-peptide binding protein (OPPA) [53852] (3 species)
contains an additional alpha+beta domain inserted in the N-terminal domain

Species:

Bacillus subtilis [TaxId:1423] [142799] (1 PDB entry)
Uniprot P42061 40-543
- Domain for 1xoc:
  - Domain d1xoca1: 1xoc A:17-520 [122201]
    complexed with zn
    has additional subdomain(s) that are not in the common domain
Salmonella typhimurium [TaxId:90371] [53853] (32 PDB entries)
1. Domain for 1b05:
  - Domain d1b05a_: 1b05 A: [35745]
    complexed with u1
    has additional subdomain(s) that are not in the common domain
2. Domain for 1b0h:
  - Domain d1b0ha_: 1b0h A: [35736]
    complexed with u1
    has additional subdomain(s) that are not in the common domain
3. Domain for 1b1h:
  - Domain d1b1ha_: 1b1h A: [35729]
    complexed with ium
    has additional subdomain(s) that are not in the common domain
4. Domain for 1b2h:
  - Domain d1b2ha_: 1b2h A: [35738]
    complexed with act, u1
    has additional subdomain(s) that are not in the common domain
5. Domain for 1b32:
  - Domain d1b32a_: 1b32 A: [35723]
    complexed with act, ium
    has additional subdomain(s) that are not in the common domain
6. Domain for 1b3f:
  - Domain d1b3fa_: 1b3f A: [35726]
    complexed with ium
    has additional subdomain(s) that are not in the common domain
7. Domain for 1b3g:
  - Domain d1b3ga_: 1b3g A: [35744]
    complexed with ium
    has additional subdomain(s) that are not in the common domain
8. Domain for 1b3h:
  - Domain d1b3ha_: 1b3h A: [35741]
    complexed with u1
    has additional subdomain(s) that are not in the common domain
9. Domains for 1b3l:
  1. Domain d1b3la_: 1b3l A: [35742]
    complexed with ium
    has additional subdomain(s) that are not in the common domain
  2. Domain d1b3lc_: 1b3l C: [35743]
    complexed with ium
    has additional subdomain(s) that are not in the common domain
10. Domain for 1b40:
  - Domain d1b40a_: 1b40 A: [35748]
    complexed with ium
    has additional subdomain(s) that are not in the common domain
11. Domain for 1b46:
  - Domain d1b46a_: 1b46 A: [35731]
    complexed with act, ium
    has additional subdomain(s) that are not in the common domain
12. Domain for 1b4h:
  - Domain d1b4ha_: 1b4h A: [35737]
    complexed with u1
    has additional subdomain(s) that are not in the common domain
13. Domain for 1b4z:
  - Domain d1b4za_: 1b4z A: [35724]
    complexed with act, ium
    has additional subdomain(s) that are not in the common domain
14. Domain for 1b51:
  - Domain d1b51a_: 1b51 A: [35728]
    complexed with ium
    has additional subdomain(s) that are not in the common domain
15. Domain for 1b52:
  - Domain d1b52a_: 1b52 A: [35749]
    complexed with ium
    has additional subdomain(s) that are not in the common domain
16. Domain for 1b58:
  - Domain d1b58a_: 1b58 A: [35732]
    complexed with ium
    has additional subdomain(s) that are not in the common domain
17. Domain for 1b5h:
  - Domain d1b5ha_: 1b5h A: [35739]
    complexed with u1
    has additional subdomain(s) that are not in the common domain
18. Domain for 1b5i:
  - Domain d1b5ia_: 1b5i A: [35735]
    complexed with u1
    has additional subdomain(s) that are not in the common domain
19. Domain for 1b5j:
  - Domain d1b5ja_: 1b5j A: [35730]
    complexed with u1
    has additional subdomain(s) that are not in the common domain
20. Domain for 1b6h:
  - Domain d1b6ha_: 1b6h A: [35727]
    complexed with u1
    has additional subdomain(s) that are not in the common domain
21. Domain for 1b7h:
  - Domain d1b7ha_: 1b7h A: [35747]
    complexed with u1
    has additional subdomain(s) that are not in the common domain
22. Domain for 1b9j:
  - Domain d1b9ja_: 1b9j A: [35733]
    complexed with ium
    has additional subdomain(s) that are not in the common domain
23. Domain for 1jet:
  - Domain d1jeta_: 1jet A: [35718]
    complexed with ium
    has additional subdomain(s) that are not in the common domain
24. Domain for 1jeu:
  - Domain d1jeua_: 1jeu A: [35719]
    complexed with ium
    has additional subdomain(s) that are not in the common domain
25. Domain for 1jev:
  - Domain d1jeva_: 1jev A: [35720]
    complexed with ium
    has additional subdomain(s) that are not in the common domain
26. Domain for 1ola:
  - Domain d1olaa_: 1ola A: [35746]
    complexed with ium
    has additional subdomain(s) that are not in the common domain
27. Domain for 1olc:
  - Domain d1olca_: 1olc A: [35740]
    complexed with ium
    has additional subdomain(s) that are not in the common domain
28. Domain for 1qka:
  - Domain d1qkaa_: 1qka A: [35725]
    complexed with ium
    has additional subdomain(s) that are not in the common domain
29. Domain for 1qkb:
  - Domain d1qkba_: 1qkb A: [35734]
    complexed with act, ium
    has additional subdomain(s) that are not in the common domain
30. Domain for 1rkm:
  - Domain d1rkma_: 1rkm A: [35750]
    has additional subdomain(s) that are not in the common domain
31. Domain for 2olb:
  - Domain d2olba_: 2olb A: [35721]
    complexed with act, ium
    has additional subdomain(s) that are not in the common domain
32. Domain for 2rkm:
  - Domain d2rkma_: 2rkm A: [35722]
    complexed with ium, lys
    has additional subdomain(s) that are not in the common domain

Thermotoga maritima [TaxId:2336] [142800] (3 PDB entries)
Uniprot Q9X0V0 23-557
TM1223

Domains for 1vr5:

Domain d1vr5a1: 1vr5 A:23-557 [120437]
Other proteins in same PDB: d1vr5a2, d1vr5b3
complexed with act, cl, edo, epe, fmt, na
has additional subdomain(s) that are not in the common domain

Domain d1vr5b2: 1vr5 B:23-557 [120438]
Other proteins in same PDB: d1vr5a2, d1vr5b3
automated match to d1vr5a1
complexed with act, cl, edo, epe, fmt, na
has additional subdomain(s) that are not in the common domain

Domains for 4pft:
1. Domain d4pfta1: 4pft A:22-557 [259689]
  Other proteins in same PDB: d4pfta2, d4pftb2
  automated match to d1vr5a1
  complexed with mg, no3
  has additional subdomain(s) that are not in the common domain
2. Domain d4pftb1: 4pft B:21-557 [259688]
  Other proteins in same PDB: d4pfta2, d4pftb2
  automated match to d1vr5a1
  complexed with mg, no3
  has additional subdomain(s) that are not in the common domain
Domains for 4pfy:
1. Domain d4pfya1: 4pfy A:21-557 [259920]
  Other proteins in same PDB: d4pfya2, d4pfyb2
  automated match to d1vr5a1
  complexed with mg, no3
  has additional subdomain(s) that are not in the common domain
2. Domain d4pfyb1: 4pfy B:22-557 [259919]
  Other proteins in same PDB: d4pfya2, d4pfyb2
  automated match to d1vr5a1
  complexed with mg, no3
  has additional subdomain(s) that are not in the common domain

More info for Protein Oligo-peptide binding protein (OPPA) from c.94.1.1: Phosphate binding protein-like

Timeline for Protein Oligo-peptide binding protein (OPPA) from c.94.1.1: Phosphate binding protein-like:

Protein Oligo-peptide binding protein (OPPA) from c.94.1.1: Phosphate binding protein-like first appeared (with stable ids) in SCOP 1.55
Protein Oligo-peptide binding protein (OPPA) from c.94.1.1: Phosphate binding protein-like appears in SCOPe 2.07