Lineage for Protein: Nickel-binding periplasmic protein NikA

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2144291Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
    consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
    mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest
  4. 2144292Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families) (S)
    Similar in architecture to the superfamily I but partly differs in topology
  5. 2144293Family c.94.1.1: Phosphate binding protein-like [53851] (45 protein domains)
  6. 2144986Protein Nickel-binding periplasmic protein NikA [102694] (2 species)
    similar domain organization to oligo- and dipeptide-binding protein

Species:

  1. 2144987Brucella suis [TaxId:29461] [259856] (2 PDB entries)
    1. Domains for 4oer:
      1. 2144988Domain d4oera_: 4oer A: [261116]
        automated match to d1zlqb_
        complexed with gol, so4
      2. 2144989Domain d4oerb_: 4oer B: [259857]
        automated match to d1zlqb_
        complexed with gol, so4
    2. Domain for 4oes:
  2. 2144991Escherichia coli [TaxId:562] [102695] (20 PDB entries)
    1. Domains for 1uiu:
      1. 2145011Domain d1uiua_: 1uiu A: [99434]
      2. 2145012Domain d1uiub_: 1uiu B: [99435]
    2. Domains for 1uiv:
      1. 2145013Domain d1uiva_: 1uiv A: [99436]
        complexed with ni
      2. 2145014Domain d1uivb_: 1uiv B: [99437]
        complexed with ni
    3. Domains for 1zlq:
      1. 2145003Domain d1zlqa1: 1zlq A:3-501 [125253]
        complexed with act, cl, dtt, edt, fe, gol, so4
      2. 2145004Domain d1zlqb_: 1zlq B: [125254]
        automated match to d1uiva_
        complexed with act, cl, dtt, edt, fe, gol, so4
    4. Domain for 2noo:
    5. Domains for 3dp8:
      1. 2145024Domain d3dp8a_: 3dp8 A: [157821]
        automated match to d1zlqa1
        complexed with act, cl, gol, hct, ni, so4
      2. 2145025Domain d3dp8b_: 3dp8 B: [157822]
        automated match to d1zlqa1
        complexed with act, cl, gol, hct, ni, so4
      3. 2145026Domain d3dp8c_: 3dp8 C: [157823]
        automated match to d1zlqa1
        complexed with act, cl, gol, hct, ni, so4
    6. Domains for 3e3k:
      1. 2145027Domain d3e3ka_: 3e3k A: [157991]
        automated match to d1zlqa1
        complexed with act, cl, gol, hct, so4
      2. 2145028Domain d3e3kb_: 3e3k B: [157992]
        automated match to d1zlqa1
        complexed with act, cl, gol, hct, so4
      3. 2145029Domain d3e3kc_: 3e3k C: [157993]
        automated match to d1zlqa1
        complexed with act, cl, gol, hct, so4
    7. Domains for 3mvw:
      1. 2145001Domain d3mvwa_: 3mvw A: [181612]
        automated match to d1zlqa1
        complexed with act, bhz, cl, fe, gol, so4
      2. 2145002Domain d3mvwb_: 3mvw B: [181613]
        automated match to d1zlqa1
        complexed with act, bhz, cl, fe, gol, so4
    8. Domains for 3mvx:
      1. 2144995Domain d3mvxa_: 3mvx A: [181614]
        automated match to d1zlqa1
        complexed with act, bhz, cl, dtu, dtv, fe2, gol, so4
      2. 2144996Domain d3mvxb_: 3mvx B: [181615]
        automated match to d1zlqa1
        complexed with act, bhz, cl, dtu, dtv, fe2, gol, so4
    9. Domains for 3mvy:
      1. 2145022Domain d3mvya_: 3mvy A: [181616]
        automated match to d1zlqa1
        complexed with act, bhz, cl, fe, gol, per, so4
      2. 2145023Domain d3mvyb_: 3mvy B: [181617]
        automated match to d1zlqa1
        complexed with act, bhz, cl, fe, gol, per, so4
    10. Domains for 3mvz:
      1. 2144997Domain d3mvza_: 3mvz A: [181618]
        automated match to d1zlqa1
        complexed with act, bhn, fe, gol, per, so4
      2. 2144998Domain d3mvzb_: 3mvz B: [181619]
        automated match to d1zlqa1
        complexed with act, bhn, fe, gol, per, so4
    11. Domains for 3mw0:
      1. 2145017Domain d3mw0a_: 3mw0 A: [181620]
        automated match to d1zlqa1
        complexed with bhr, dtd, fe
      2. 2145018Domain d3mw0b_: 3mw0 B: [181621]
        automated match to d1zlqa1
        complexed with bhr, dtd, fe
    12. Domains for 3mz9:
      1. 2145005Domain d3mz9a_: 3mz9 A: [181727]
        automated match to d1zlqa1
        complexed with act, bhn, cl, dtd, fe, gol, so4
      2. 2145006Domain d3mz9b_: 3mz9 B: [181728]
        automated match to d1zlqa1
        complexed with act, bhn, cl, dtd, fe, gol, so4
    13. Domains for 3mzb:
      1. 2144999Domain d3mzba_: 3mzb A: [181729]
        automated match to d1zlqa1
        complexed with act, bhr, cl, dtd, fe, gol, so4
      2. 2145000Domain d3mzbb_: 3mzb B: [199910]
        automated match to d3mzba_
        complexed with act, bhr, cl, dtd, fe, gol, so4
    14. Domains for 3qim:
      1. 2145015Domain d3qima_: 3qim A: [184405]
        automated match to d1zlqa1
        complexed with act, gol, so4
      2. 2145016Domain d3qimb_: 3qim B: [184406]
        automated match to d1zlqa1
        complexed with act, gol, so4
    15. Domains for 4dcx:
      1. 2145009Domain d4dcxa_: 4dcx A: [219688]
        automated match to d1zlqa1
        complexed with act, gol, l2d, so4
      2. 2145010Domain d4dcxb_: 4dcx B: [219689]
        automated match to d1zlqa1
        complexed with act, gol, l2d, so4
    16. Domains for 4dcy:
      1. 2145007Domain d4dcya_: 4dcy A: [219690]
        automated match to d1zlqa1
        complexed with act, gol, l2m, so4, unx
      2. 2145008Domain d4dcyb_: 4dcy B: [219691]
        automated match to d1zlqa1
        complexed with act, gol, l2m, so4, unx
    17. Domains for 4i8c:
      1. 2145019Domain d4i8ca_: 4i8c A: [223009]
        automated match to d1zlqb_
        complexed with act, cl, gol, his, ni, so4
      2. 2145020Domain d4i8cb_: 4i8c B: [223010]
        automated match to d1zlqa1
        complexed with act, cl, gol, his, ni, so4
      3. 2145021Domain d4i8cc_: 4i8c C: [223011]
        automated match to d1zlqa1
        complexed with act, cl, gol, his, ni, so4
    18. Domains for 4i9d:
      1. 2144992Domain d4i9da_: 4i9d A: [196854]
        automated match to d3e3kb_
        complexed with act, gol, l4d, so4
      2. 2144993Domain d4i9db_: 4i9d B: [196855]
        automated match to d3e3kb_
        complexed with act, gol, l4d, so4
    19. Domains for 5l8d:
      1. 2289100Domain d5l8da_: 5l8d A: [332401]
        automated match to d1zlqa1
        complexed with 6rp, act, cl, cmo, edt, fe, gol, ru, so4
      2. 2289110Domain d5l8db_: 5l8d B: [332411]
        automated match to d1zlqa1
        complexed with 6rp, act, cl, cmo, edt, fe, gol, ru, so4
    20. Domains for 5mwu:
      1. 2286791Domain d5mwua_: 5mwu A: [330092]
        automated match to d1zlqa1
        complexed with 6rp, act, cl, cmo, edt, fe, gol, ru, so4
      2. 2286908Domain d5mwub_: 5mwu B: [330209]
        automated match to d1zlqa1
        complexed with 6rp, act, cl, cmo, edt, fe, gol, ru, so4

More info for Protein Nickel-binding periplasmic protein NikA from c.94.1.1: Phosphate binding protein-like

Timeline for Protein Nickel-binding periplasmic protein NikA from c.94.1.1: Phosphate binding protein-like: