Lineage for Protein: Nickel-binding periplasmic protein NikA

  1. Root: SCOPe 2.08
  2. 2826024Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2913607Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
    consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
    mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest
  4. 2913608Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families) (S)
    Similar in architecture to the superfamily I but partly differs in topology
  5. 2913609Family c.94.1.1: Phosphate binding protein-like [53851] (45 proteins)
    has additional insertions and/or extensions that are not grouped together
  6. 2914454Protein Nickel-binding periplasmic protein NikA [102694] (2 species)
    similar domain organization to oligo- and dipeptide-binding protein

Species:

  1. 2914455Brucella suis [TaxId:29461] [259856] (2 PDB entries)
    1. Domains for 4oer:
      1. 2914456Domain d4oera_: 4oer A: [261116]
        automated match to d1zlqb_
        complexed with gol, so4

        has additional subdomain(s) that are not in the common domain
      2. 2914457Domain d4oerb_: 4oer B: [259857]
        automated match to d1zlqb_
        complexed with gol, so4

        has additional subdomain(s) that are not in the common domain
    2. Domain for 4oes:
      • 2914458Domain d4oesa_: 4oes A: [267035]
        automated match to d4oera_
        complexed with edt, fe, gol, so4

        has additional subdomain(s) that are not in the common domain
  2. 2914459Escherichia coli [TaxId:562] [102695] (28 PDB entries)
    1. Domains for 1uiu:
      1. 2914491Domain d1uiua_: 1uiu A: [99434]
        has additional subdomain(s) that are not in the common domain
      2. 2914492Domain d1uiub_: 1uiu B: [99435]
        has additional subdomain(s) that are not in the common domain
    2. Domains for 1uiv:
      1. 2914495Domain d1uiva_: 1uiv A: [99436]
        complexed with ni
        has additional subdomain(s) that are not in the common domain
      2. 2914496Domain d1uivb_: 1uiv B: [99437]
        complexed with ni
        has additional subdomain(s) that are not in the common domain
    3. Domains for 1zlq:
      1. 2914470Domain d1zlqa1: 1zlq A:3-501 [125253]
        complexed with act, cl, dtt, edt, fe, gol, so4
        has additional subdomain(s) that are not in the common domain
      2. 2914471Domain d1zlqb_: 1zlq B: [125254]
        automated match to d1uiva_
        complexed with act, cl, dtt, edt, fe, gol, so4

        has additional subdomain(s) that are not in the common domain
    4. Domain for 2noo:
      • 2914488Domain d2nooa_: 2noo A: [166320]
        automated match to d1zlqa1
        complexed with iod, ni; mutant

        has additional subdomain(s) that are not in the common domain
    5. Domains for 3dp8:
      1. 2914510Domain d3dp8a_: 3dp8 A: [157821]
        automated match to d1zlqa1
        complexed with act, cl, gol, hct, ni, so4

        has additional subdomain(s) that are not in the common domain
      2. 2914511Domain d3dp8b_: 3dp8 B: [157822]
        automated match to d1zlqa1
        complexed with act, cl, gol, hct, ni, so4

        has additional subdomain(s) that are not in the common domain
      3. 2914512Domain d3dp8c_: 3dp8 C: [157823]
        automated match to d1zlqa1
        complexed with act, cl, gol, hct, ni, so4

        has additional subdomain(s) that are not in the common domain
    6. Domains for 3e3k:
      1. 2914515Domain d3e3ka_: 3e3k A: [157991]
        automated match to d1zlqa1
        complexed with act, cl, gol, hct, so4

        has additional subdomain(s) that are not in the common domain
      2. 2914516Domain d3e3kb_: 3e3k B: [157992]
        automated match to d1zlqa1
        complexed with act, cl, gol, hct, so4

        has additional subdomain(s) that are not in the common domain
      3. 2914517Domain d3e3kc_: 3e3k C: [157993]
        automated match to d1zlqa1
        complexed with act, cl, gol, hct, so4

        has additional subdomain(s) that are not in the common domain
    7. Domains for 3mvw:
      1. 2914468Domain d3mvwa_: 3mvw A: [181612]
        automated match to d1zlqa1
        complexed with act, bhz, cl, fe, gol, so4

        has additional subdomain(s) that are not in the common domain
      2. 2914469Domain d3mvwb_: 3mvw B: [181613]
        automated match to d1zlqa1
        complexed with act, bhz, cl, fe, gol, so4

        has additional subdomain(s) that are not in the common domain
    8. Domains for 3mvx:
      1. 2914462Domain d3mvxa_: 3mvx A: [181614]
        automated match to d1zlqa1
        complexed with act, bhz, cl, dtu, dtv, fe2, gol, so4

        has additional subdomain(s) that are not in the common domain
      2. 2914463Domain d3mvxb_: 3mvx B: [181615]
        automated match to d1zlqa1
        complexed with act, bhz, cl, dtu, dtv, fe2, gol, so4

        has additional subdomain(s) that are not in the common domain
    9. Domains for 3mvy:
      1. 2914506Domain d3mvya_: 3mvy A: [181616]
        automated match to d1zlqa1
        complexed with act, bhz, cl, fe, gol, per, so4

        has additional subdomain(s) that are not in the common domain
      2. 2914507Domain d3mvyb_: 3mvy B: [181617]
        automated match to d1zlqa1
        complexed with act, bhz, cl, fe, gol, per, so4

        has additional subdomain(s) that are not in the common domain
    10. Domains for 3mvz:
      1. 2914464Domain d3mvza_: 3mvz A: [181618]
        automated match to d1zlqa1
        complexed with act, bhn, fe, gol, per, so4

        has additional subdomain(s) that are not in the common domain
      2. 2914465Domain d3mvzb_: 3mvz B: [181619]
        automated match to d1zlqa1
        complexed with act, bhn, fe, gol, per, so4

        has additional subdomain(s) that are not in the common domain
    11. Domains for 3mw0:
      1. 2914497Domain d3mw0a_: 3mw0 A: [181620]
        automated match to d1zlqa1
        complexed with bhr, dtd, fe

        has additional subdomain(s) that are not in the common domain
      2. 2914498Domain d3mw0b_: 3mw0 B: [181621]
        automated match to d1zlqa1
        complexed with bhr, dtd, fe

        has additional subdomain(s) that are not in the common domain
    12. Domains for 3mz9:
      1. 2914474Domain d3mz9a_: 3mz9 A: [181727]
        automated match to d1zlqa1
        complexed with act, bhn, cl, dtd, fe, gol, so4

        has additional subdomain(s) that are not in the common domain
      2. 2914475Domain d3mz9b_: 3mz9 B: [181728]
        automated match to d1zlqa1
        complexed with act, bhn, cl, dtd, fe, gol, so4

        has additional subdomain(s) that are not in the common domain
    13. Domains for 3mzb:
      1. 2914466Domain d3mzba_: 3mzb A: [181729]
        automated match to d1zlqa1
        complexed with act, bhr, cl, dtd, fe, gol, so4

        has additional subdomain(s) that are not in the common domain
      2. 2914467Domain d3mzbb_: 3mzb B: [199910]
        automated match to d3mzba_
        complexed with act, bhr, cl, dtd, fe, gol, so4

        has additional subdomain(s) that are not in the common domain
    14. Domains for 3qim:
      1. 2914489Domain d3qima_: 3qim A: [184405]
        automated match to d1zlqa1
        complexed with act, gol, so4

        has additional subdomain(s) that are not in the common domain
      2. 2914490Domain d3qimb_: 3qim B: [184406]
        automated match to d1zlqa1
        complexed with act, gol, so4

        has additional subdomain(s) that are not in the common domain
    15. Domains for 4dcx:
      1. 2914478Domain d4dcxa_: 4dcx A: [219688]
        automated match to d1zlqa1
        complexed with act, gol, l2d, so4

        has additional subdomain(s) that are not in the common domain
      2. 2914479Domain d4dcxb_: 4dcx B: [219689]
        automated match to d1zlqa1
        complexed with act, gol, l2d, so4

        has additional subdomain(s) that are not in the common domain
    16. Domains for 4dcy:
      1. 2914476Domain d4dcya_: 4dcy A: [219690]
        automated match to d1zlqa1
        complexed with act, gol, l2m, so4, unx

        has additional subdomain(s) that are not in the common domain
      2. 2914477Domain d4dcyb_: 4dcy B: [219691]
        automated match to d1zlqa1
        complexed with act, gol, l2m, so4, unx

        has additional subdomain(s) that are not in the common domain
    17. Domains for 4i8c:
      1. 2914503Domain d4i8ca_: 4i8c A: [223009]
        automated match to d1zlqb_
        complexed with act, cl, gol, his, ni, so4

        has additional subdomain(s) that are not in the common domain
      2. 2914504Domain d4i8cb_: 4i8c B: [223010]
        automated match to d1zlqa1
        complexed with act, cl, gol, his, ni, so4

        has additional subdomain(s) that are not in the common domain
      3. 2914505Domain d4i8cc_: 4i8c C: [223011]
        automated match to d1zlqa1
        complexed with act, cl, gol, his, ni, so4

        has additional subdomain(s) that are not in the common domain
    18. Domains for 4i9d:
      1. 2914460Domain d4i9da_: 4i9d A: [196854]
        automated match to d3e3kb_
        complexed with act, gol, l4d, so4

        has additional subdomain(s) that are not in the common domain
      2. 2914461Domain d4i9db_: 4i9d B: [196855]
        automated match to d3e3kb_
        complexed with act, gol, l4d, so4

        has additional subdomain(s) that are not in the common domain
    19. Domains for 5l8d:
      1. 2914499Domain d5l8da_: 5l8d A: [332401]
        automated match to d1zlqa1
        complexed with 6rp, act, cl, cmo, edt, fe, gol, ru, so4

        has additional subdomain(s) that are not in the common domain
      2. 2914500Domain d5l8db_: 5l8d B: [332411]
        automated match to d1zlqa1
        complexed with 6rp, act, cl, cmo, edt, fe, gol, ru, so4

        has additional subdomain(s) that are not in the common domain
    20. Domains for 5mwu:
      1. 2914501Domain d5mwua_: 5mwu A: [330092]
        automated match to d1zlqa1
        complexed with 6rp, act, cl, cmo, edt, fe, gol, ru, so4

        has additional subdomain(s) that are not in the common domain
      2. 2914502Domain d5mwub_: 5mwu B: [330209]
        automated match to d1zlqa1
        complexed with 6rp, act, cl, cmo, edt, fe, gol, ru, so4

        has additional subdomain(s) that are not in the common domain
    21. Domains for 5on0:
      1. 2914484Domain d5on0a_: 5on0 A: [342835]
        automated match to d1zlqa1
        complexed with 9yh, act, cl, fe, gol, so4

        has additional subdomain(s) that are not in the common domain
      2. 2914485Domain d5on0b_: 5on0 B: [342846]
        automated match to d1zlqa1
        complexed with 9yh, act, cl, fe, gol, so4

        has additional subdomain(s) that are not in the common domain
    22. Domains for 5on1:
      1. 2914480Domain d5on1a_: 5on1 A: [342896]
        automated match to d1zlqa1
        complexed with 9yk, act, cl, dtd, fe, gol, so4

        has additional subdomain(s) that are not in the common domain
      2. 2914481Domain d5on1b_: 5on1 B: [342859]
        automated match to d1zlqa1
        complexed with 9yk, act, cl, dtd, fe, gol, so4

        has additional subdomain(s) that are not in the common domain
    23. Domains for 5on4:
      1. 2914513Domain d5on4a_: 5on4 A: [342822]
        automated match to d1zlqa1
        complexed with 9yk, fe, gol

        has additional subdomain(s) that are not in the common domain
      2. 2914514Domain d5on4b_: 5on4 B: [342820]
        automated match to d1zlqa1
        complexed with 9yk, fe, gol

        has additional subdomain(s) that are not in the common domain
    24. Domains for 5on5:
      1. 2914493Domain d5on5a_: 5on5 A: [342814]
        automated match to d1zlqa1
        complexed with 9yh, act, cl, fe, gol

        has additional subdomain(s) that are not in the common domain
      2. 2914494Domain d5on5b_: 5on5 B: [342852]
        automated match to d1zlqa1
        complexed with 9yh, act, cl, fe, gol

        has additional subdomain(s) that are not in the common domain
    25. Domains for 5on8:
      1. 2914472Domain d5on8a_: 5on8 A: [342809]
        automated match to d1zlqa1
        complexed with 9yh, act, cl, fe, gol, so4

        has additional subdomain(s) that are not in the common domain
      2. 2914473Domain d5on8b_: 5on8 B: [342808]
        automated match to d1zlqa1
        complexed with 9yh, act, cl, fe, gol, so4

        has additional subdomain(s) that are not in the common domain
    26. Domains for 5on9:
      1. 2914482Domain d5on9a_: 5on9 A: [342847]
        automated match to d1zlqa1
        complexed with 9yh, act, cl, dtt, fe, gol

        has additional subdomain(s) that are not in the common domain
      2. 2914483Domain d5on9b_: 5on9 B: [342819]
        automated match to d1zlqa1
        complexed with 9yh, act, cl, dtt, fe, gol

        has additional subdomain(s) that are not in the common domain
    27. Domains for 6r4q:
      1. 2914508Domain d6r4qa_: 6r4q A: [383387]
        automated match to d1zlqa1
        complexed with 6rp, act, cl, cmo, edt, fe, gol, ru

        has additional subdomain(s) that are not in the common domain
      2. 2914509Domain d6r4qb_: 6r4q B: [383360]
        automated match to d1zlqa1
        complexed with 6rp, act, cl, cmo, edt, fe, gol, ru

        has additional subdomain(s) that are not in the common domain
    28. Domains for 7a0c:
      1. 2914486Domain d7a0ca_: 7a0c A: [394232]
        automated match to d1zlqa1
        complexed with act, cl, fe, gol, mg, qtt

        has additional subdomain(s) that are not in the common domain
      2. 2914487Domain d7a0cb_: 7a0c B: [394231]
        automated match to d1zlqa1
        complexed with act, cl, fe, gol, mg, qtt

        has additional subdomain(s) that are not in the common domain

More info for Protein Nickel-binding periplasmic protein NikA from c.94.1.1: Phosphate binding protein-like

Timeline for Protein Nickel-binding periplasmic protein NikA from c.94.1.1: Phosphate binding protein-like: