Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2138062Fold c.73: Carbamate kinase-like [53632] (1 superfamily)
    3 layers: a/b/a; mixed (mainly parallel) beta-sheet of 8 strands, order 34215786; strand 8 is antiparallel to the rest
  4. 2138063Superfamily c.73.1: Carbamate kinase-like [53633] (4 families) (S)
    the sheet topology is similar to those of undecaprenyl diphosphate synthase and the N-terminal domain of phosphoglycerate kinase
  5. 2138216Family c.73.1.0: automated matches [191466] (1 protein)
    not a true family
  6. 2138217Protein automated matches [190728] (15 species)
    not a true protein

Species:

  1. 2138218Azotobacter vinelandii [TaxId:322710] [258948] (5 PDB entries)
    1. Domain for 4ndo:
    2. Domain for 4ndp:
    3. Domain for 4ndq:
    4. Domain for 4ndr:
    5. Domain for 5o5w:
  2. 2138223Azotobacter vinelandii [TaxId:354] [194940] (2 PDB entries)
    1. Domain for 2ogx:
    2. Domain for 4f6t:
  3. 2138226Bacillus anthracis [TaxId:198094] [188502] (1 PDB entry)
  4. 2138230Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [226376] (3 PDB entries)
    1. Domains for 3zzf:
      1. 2138235Domain d3zzfa_: 3zzf A: [218597]
        automated match to d2btya1
        complexed with cl, edo, gol, hg, nlg
      2. 2138236Domain d3zzfb_: 3zzf B: [218598]
        automated match to d2btya1
        complexed with cl, edo, gol, hg, nlg
      3. 2138237Domain d3zzfc_: 3zzf C: [218599]
        automated match to d2btya1
        complexed with cl, edo, gol, hg, nlg
      4. 2138238Domain d3zzfd_: 3zzf D: [218600]
        automated match to d2btya1
        complexed with cl, edo, gol, hg, nlg
    2. Domains for 3zzg:
      1. 2138239Domain d3zzga_: 3zzg A: [218601]
        automated match to d2btya1
      2. 2138240Domain d3zzgb_: 3zzg B: [218602]
        automated match to d2btya1
      3. 2138241Domain d3zzgc_: 3zzg C: [218603]
        automated match to d2btya1
      4. 2138242Domain d3zzgd_: 3zzg D: [218604]
        automated match to d2btya1
    3. Domains for 3zzh:
      1. 2138231Domain d3zzha_: 3zzh A: [218605]
        automated match to d2btya1
        complexed with arg, cl, edo, gol, mli, nlg
      2. 2138232Domain d3zzhb_: 3zzh B: [218606]
        automated match to d2btya1
        complexed with arg, cl, edo, gol, mli, nlg
      3. 2138233Domain d3zzhc_: 3zzh C: [218607]
        automated match to d2btya1
        complexed with arg, cl, edo, gol, mli, nlg
      4. 2138234Domain d3zzhd_: 3zzh D: [218608]
        automated match to d2btya1
        complexed with arg, cl, edo, gol, mli, nlg
  5. 2138243Escherichia coli [TaxId:511693] [189123] (1 PDB entry)
  6. 2138245Giardia lamblia [TaxId:184922] [197259] (5 PDB entries)
    1. Domains for 3kzf:
      1. 2138262Domain d3kzfa_: 3kzf A: [247301]
        automated match to d4jz8a_
        complexed with gol
      2. 2138263Domain d3kzfb_: 3kzf B: [247302]
        automated match to d4jz8a_
        complexed with gol
      3. 2138264Domain d3kzfc_: 3kzf C: [247303]
        automated match to d4jz8a_
        complexed with gol
      4. 2138265Domain d3kzfd_: 3kzf D: [247304]
        automated match to d4jz8a_
        complexed with gol
    2. Domains for 4jz7:
      1. 2138254Domain d4jz7a_: 4jz7 A: [197260]
        automated match to d1e19a_
        complexed with anp
      2. 2138255Domain d4jz7b_: 4jz7 B: [202818]
        automated match to d4jz7a_
        complexed with anp
      3. 2138256Domain d4jz7c_: 4jz7 C: [202819]
        automated match to d4jz7a_
        complexed with anp
      4. 2138257Domain d4jz7d_: 4jz7 D: [202820]
        automated match to d4jz7a_
        complexed with anp
    3. Domains for 4jz8:
      1. 2138246Domain d4jz8a_: 4jz8 A: [224087]
        automated match to d4jz7a_
        complexed with cit
      2. 2138247Domain d4jz8b_: 4jz8 B: [224088]
        automated match to d4jz7a_
        complexed with cit
      3. 2138248Domain d4jz8c_: 4jz8 C: [224089]
        automated match to d4jz7a_
        complexed with cit
      4. 2138249Domain d4jz8d_: 4jz8 D: [224090]
        automated match to d4jz7a_
        complexed with cit
    4. Domains for 4jz9:
      1. 2138250Domain d4jz9a_: 4jz9 A: [224091]
        automated match to d4jz7a_
        complexed with cit
      2. 2138251Domain d4jz9b_: 4jz9 B: [224092]
        automated match to d4jz7a_
        complexed with cit
      3. 2138252Domain d4jz9c_: 4jz9 C: [224093]
        automated match to d4jz7a_
        complexed with cit
      4. 2138253Domain d4jz9d_: 4jz9 D: [224094]
        automated match to d4jz7a_
        complexed with cit
    5. Domains for 4olc:
      1. 2138258Domain d4olca_: 4olc A: [237233]
        automated match to d4jz7a_
        complexed with cit, dcd
      2. 2138259Domain d4olcb_: 4olc B: [237234]
        automated match to d4jz7a_
        complexed with cit, dcd
      3. 2138260Domain d4olcc_: 4olc C: [237232]
        automated match to d4jz7a_
        complexed with cit, dcd
      4. 2138261Domain d4olcd_: 4olc D: [237235]
        automated match to d4jz7a_
        complexed with cit, dcd
  7. 2138266Helicobacter pylori [TaxId:85962] [195071] (2 PDB entries)
    1. Domains for 4a7w:
      1. 2138267Domain d4a7wa_: 4a7w A: [195073]
        automated match to d3ek6b_
        complexed with gol, gtp
      2. 2138268Domain d4a7wb_: 4a7w B: [195072]
        automated match to d3ek6b_
        complexed with gol, gtp
    2. Domains for 4a7x:
      1. 2138269Domain d4a7xa_: 4a7x A: [218694]
        automated match to d4a7wb_
        complexed with udp
      2. 2138270Domain d4a7xb_: 4a7x B: [218695]
        automated match to d4a7wb_
        complexed with udp
      3. 2138271Domain d4a7xc_: 4a7x C: [218696]
        automated match to d4a7wb_
        complexed with udp
      4. 2138272Domain d4a7xd_: 4a7x D: [218697]
        automated match to d4a7wb_
        complexed with udp
      5. 2138273Domain d4a7xe_: 4a7x E: [218698]
        automated match to d4a7wb_
        complexed with udp
      6. 2138274Domain d4a7xf_: 4a7x F: [218699]
        automated match to d4a7wb_
        complexed with udp
  8. 2138275Mycobacterium tuberculosis [TaxId:83332] [255987] (1 PDB entry)
  9. 2138282Mycoplasma penetrans [TaxId:28227] [226488] (1 PDB entry)
  10. 2138284Sulfolobus solfataricus [TaxId:2287] [187894] (1 PDB entry)
  11. 2138297Sulfolobus solfataricus [TaxId:273057] [187893] (2 PDB entries)
    1. Domains for 2j4j:
      1. 2138304Domain d2j4ja_: 2j4j A: [165867]
        automated match to d2bmua1
        complexed with 4tc, acp, co, mg, u5p
      2. 2138305Domain d2j4jb_: 2j4j B: [165868]
        automated match to d2bmua1
        complexed with 4tc, acp, co, mg, u5p
      3. 2138306Domain d2j4jc_: 2j4j C: [165869]
        automated match to d2bmua1
        complexed with 4tc, acp, co, mg, u5p
      4. 2138307Domain d2j4jd_: 2j4j D: [165870]
        automated match to d2bmua1
        complexed with 4tc, acp, co, mg, u5p
      5. 2138308Domain d2j4je_: 2j4j E: [165871]
        automated match to d2bmua1
        complexed with 4tc, acp, co, mg, u5p
      6. 2138309Domain d2j4jf_: 2j4j F: [165872]
        automated match to d2bmua1
        complexed with 4tc, acp, co, mg, u5p
    2. Domains for 2j4k:
      1. 2138298Domain d2j4ka_: 2j4k A: [165873]
        automated match to d2bmua1
        complexed with cd, mg, u5p
      2. 2138299Domain d2j4kb_: 2j4k B: [165874]
        automated match to d2bmua1
        complexed with cd, mg, u5p
      3. 2138300Domain d2j4kc_: 2j4k C: [165875]
        automated match to d2bmua1
        complexed with cd, mg, u5p
      4. 2138301Domain d2j4kd_: 2j4k D: [165876]
        automated match to d2bmua1
        complexed with cd, mg, u5p
      5. 2138302Domain d2j4ke_: 2j4k E: [165877]
        automated match to d2bmua1
        complexed with cd, mg, u5p
      6. 2138303Domain d2j4kf_: 2j4k F: [165878]
        automated match to d2bmua1
        complexed with cd, mg, u5p
  12. 2138310Synechococcus elongatus [TaxId:1140] [231303] (1 PDB entry)
  13. 2138317Thale cress (Arabidopsis thaliana) [TaxId:3702] [225345] (2 PDB entries)
    1. Domains for 2rd5:
      1. 2138318Domain d2rd5a_: 2rd5 A: [198335]
        Other proteins in same PDB: d2rd5c_, d2rd5d_
        automated match to d2ap9b_
        complexed with adp, arg, atp, mg, nlg
      2. 2138319Domain d2rd5b_: 2rd5 B: [198336]
        Other proteins in same PDB: d2rd5c_, d2rd5d_
        automated match to d2ap9b_
        complexed with adp, arg, atp, mg, nlg
    2. Domains for 4usj:
      1. 2138320Domain d4usja_: 4usj A: [261451]
        automated match to d2rd5b_
        complexed with adp, arg, atp, gln, mg, nlg, x2w
      2. 2138321Domain d4usjb_: 4usj B: [264004]
        automated match to d2rd5b_
        complexed with adp, arg, atp, gln, mg, nlg, x2w
  14. 2138322Ureaplasma parvum [TaxId:134821] [225337] (1 PDB entry)
  15. 2138329Xanthomonas campestris pv. campestris [TaxId:340] [188705] (2 PDB entries)
    1. Domains for 3ek5:
      1. 2138336Domain d3ek5a1: 3ek5 A:1-240 [174996]
        Other proteins in same PDB: d3ek5a2
        automated match to d2bnda1
        complexed with gtp
      2. 2138337Domain d3ek5b_: 3ek5 B: [174997]
        Other proteins in same PDB: d3ek5a2
        automated match to d2bnda1
        complexed with gtp
      3. 2138338Domain d3ek5c_: 3ek5 C: [174998]
        Other proteins in same PDB: d3ek5a2
        automated match to d2bnda1
        complexed with gtp
      4. 2138339Domain d3ek5d_: 3ek5 D: [174999]
        Other proteins in same PDB: d3ek5a2
        automated match to d2bnda1
        complexed with gtp
      5. 2138340Domain d3ek5e_: 3ek5 E: [175000]
        Other proteins in same PDB: d3ek5a2
        automated match to d2bnda1
        complexed with gtp
      6. 2138341Domain d3ek5f_: 3ek5 F: [175001]
        Other proteins in same PDB: d3ek5a2
        automated match to d2bnda1
        complexed with gtp
    2. Domains for 3ek6:
      1. 2138330Domain d3ek6a1: 3ek6 A:1-240 [175002]
        Other proteins in same PDB: d3ek6a2
        automated match to d2bnda1
      2. 2138331Domain d3ek6b_: 3ek6 B: [175003]
        Other proteins in same PDB: d3ek6a2
        automated match to d2bnda1
      3. 2138332Domain d3ek6c_: 3ek6 C: [175004]
        Other proteins in same PDB: d3ek6a2
        automated match to d2bnda1
      4. 2138333Domain d3ek6d_: 3ek6 D: [175005]
        Other proteins in same PDB: d3ek6a2
        automated match to d2bnda1
      5. 2138334Domain d3ek6e_: 3ek6 E: [175006]
        Other proteins in same PDB: d3ek6a2
        automated match to d2bnda1
      6. 2138335Domain d3ek6f_: 3ek6 F: [175007]
        Other proteins in same PDB: d3ek6a2
        automated match to d2bnda1

More info for Protein automated matches from c.73.1.0: automated matches

Timeline for Protein automated matches from c.73.1.0: automated matches: