PDB entry 2rd5
View 2rd5 on RCSB PDB site
Description: Structural basis for the regulation of N-acetylglutamate kinase by PII in Arabidopsis thaliana
Class: protein binding
Keywords: protein-protein complex, regulation of arginine biosynthesis, nitrogen metabolism, Kinase, Transferase, Transcription, Transcription regulation, PROTEIN BINDING
Deposited on
2007-09-21, released
2007-10-02
The last revision prior to the SCOPe 2.08 freeze date was dated
2017-10-25, with a file datestamp of
2017-10-20.
Experiment type: XRAY
Resolution: 2.51 Å
R-factor: N/A
AEROSPACI score: 0.21
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Acetylglutamate kinase-like protein
Species: Arabidopsis thaliana [TaxId:3702]
Gene: T8H10.160
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2rd5a_ - Chain 'B':
Compound: Acetylglutamate kinase-like protein
Species: Arabidopsis thaliana [TaxId:3702]
Gene: T8H10.160
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2rd5b_ - Chain 'C':
Compound: pii protein
Species: Arabidopsis thaliana [TaxId:3702]
Gene: AT4g01900, T7B11.16
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2rd5c_ - Chain 'D':
Compound: pii protein
Species: Arabidopsis thaliana [TaxId:3702]
Gene: AT4g01900, T7B11.16
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2rd5d_ - Heterogens: ARG, ADP, NLG, MG, ATP, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2rd5A (A:)
mtvstppsiatgnapspdyrveilseslpfiqkfrgktivvkyggaamtspelkssvvsd
lvllacvglrpilvhgggpdinrylkqlnipaefrdglrvtdattmeivsmvlvgkvnkn
lvslinaagatavglsghdgrlltarpvpnsaqlgfvgevarvdpsvlrplvdygyipvi
asvaaddsgqayninadtvagelaaalgaeklilltdvagilenkedpsslikeidikgv
kkmiedgkvaggmipkvkccirslaqgvktasiidgrrqhsllheimsdegagtmitg
Sequence, based on observed residues (ATOM records): (download)
>2rd5A (A:)
dyrveilseslpfiqkfrgktivvkyggaamtspelkssvvsdlvllacvglrpilvhgg
gpdinrylkqlnipaefrdglrvtdattmeivsmvlvgkvnknlvslinaagatavglsg
hdgrlltarpvpnsaqlgfvgevarvdpsvlrplvdygyipviasvaaddsgqayninad
tvagelaaalgaeklilltdvagilenkedpsslikeidikgvkkmiedgkvaggmipkv
kccirslaqgvktasiidgrrqhsllheimsdegagtmitg
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2rd5B (B:)
mtvstppsiatgnapspdyrveilseslpfiqkfrgktivvkyggaamtspelkssvvsd
lvllacvglrpilvhgggpdinrylkqlnipaefrdglrvtdattmeivsmvlvgkvnkn
lvslinaagatavglsghdgrlltarpvpnsaqlgfvgevarvdpsvlrplvdygyipvi
asvaaddsgqayninadtvagelaaalgaeklilltdvagilenkedpsslikeidikgv
kkmiedgkvaggmipkvkccirslaqgvktasiidgrrqhsllheimsdegagtmitg
Sequence, based on observed residues (ATOM records): (download)
>2rd5B (B:)
spdyrveilseslpfiqkfrgktivvkyggaamtspelkssvvsdlvllacvglrpilvh
gggpdinrylkqlnipaefrdglrvtdattmeivsmvlvgkvnknlvslinaagatavgl
sghdgrlltarpvpnsaqlgfvgevarvdpsvlrplvdygyipviasvaaddsgqaynin
adtvagelaaalgaeklilltdvagilenkedpsslikeidikgvkkmiedgkvaggmip
kvkccirslaqgvktasiidgrrqhsllheimsdegagtmitg
- Chain 'C':
Sequence, based on SEQRES records: (download)
>2rd5C (C:)
mqissdyipdskfykveaivrpwriqqvssallkigirgvtvsdvrgfgaqggsterhgg
sefsedkfvakvkmeivvkkdqvesvintiiegartgeigdgkifvlpvsdvirvrtger
gekaekmtgdmlsps
Sequence, based on observed residues (ATOM records): (download)
>2rd5C (C:)
dyipdskfykveaivrpwriqqvssallkigirgvtvsdvrgfgaqggsterhggsefse
dkfvakvkmeivvkkdqvesvintiiegartgeigdgkifvlpvsdvirvrtgergekae
kmtgd
- Chain 'D':
Sequence, based on SEQRES records: (download)
>2rd5D (D:)
mqissdyipdskfykveaivrpwriqqvssallkigirgvtvsdvrgfgaqggsterhgg
sefsedkfvakvkmeivvkkdqvesvintiiegartgeigdgkifvlpvsdvirvrtger
gekaekmtgdmlsps
Sequence, based on observed residues (ATOM records): (download)
>2rd5D (D:)
dyipdskfykveaivrpwriqqvssallkigirgvtvsdvrgfgaqggsterhggsefse
dkfvakvkmeivvkkdqvesvintiiegartgeigdgkifvlpvsdvirvrtgergekae
kmtgdm