PDB entry 2rd5

View 2rd5 on RCSB PDB site
Description: Structural basis for the regulation of N-acetylglutamate kinase by PII in Arabidopsis thaliana
Class: protein binding
Keywords: protein-protein complex, regulation of arginine biosynthesis, nitrogen metabolism, Kinase, Transferase, Transcription, Transcription regulation, PROTEIN BINDING
Deposited on 2007-09-21, released 2007-10-02
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-10-25, with a file datestamp of 2017-10-20.
Experiment type: XRAY
Resolution: 2.51 Å
R-factor: N/A
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Acetylglutamate kinase-like protein
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: T8H10.160
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2rd5a_
  • Chain 'B':
    Compound: Acetylglutamate kinase-like protein
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: T8H10.160
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2rd5b_
  • Chain 'C':
    Compound: pii protein
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: AT4g01900, T7B11.16
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2rd5c_
  • Chain 'D':
    Compound: pii protein
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: AT4g01900, T7B11.16
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2rd5d_
  • Heterogens: ARG, ADP, NLG, MG, ATP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2rd5A (A:)
    mtvstppsiatgnapspdyrveilseslpfiqkfrgktivvkyggaamtspelkssvvsd
    lvllacvglrpilvhgggpdinrylkqlnipaefrdglrvtdattmeivsmvlvgkvnkn
    lvslinaagatavglsghdgrlltarpvpnsaqlgfvgevarvdpsvlrplvdygyipvi
    asvaaddsgqayninadtvagelaaalgaeklilltdvagilenkedpsslikeidikgv
    kkmiedgkvaggmipkvkccirslaqgvktasiidgrrqhsllheimsdegagtmitg
    

    Sequence, based on observed residues (ATOM records): (download)
    >2rd5A (A:)
    dyrveilseslpfiqkfrgktivvkyggaamtspelkssvvsdlvllacvglrpilvhgg
    gpdinrylkqlnipaefrdglrvtdattmeivsmvlvgkvnknlvslinaagatavglsg
    hdgrlltarpvpnsaqlgfvgevarvdpsvlrplvdygyipviasvaaddsgqayninad
    tvagelaaalgaeklilltdvagilenkedpsslikeidikgvkkmiedgkvaggmipkv
    kccirslaqgvktasiidgrrqhsllheimsdegagtmitg
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >2rd5B (B:)
    mtvstppsiatgnapspdyrveilseslpfiqkfrgktivvkyggaamtspelkssvvsd
    lvllacvglrpilvhgggpdinrylkqlnipaefrdglrvtdattmeivsmvlvgkvnkn
    lvslinaagatavglsghdgrlltarpvpnsaqlgfvgevarvdpsvlrplvdygyipvi
    asvaaddsgqayninadtvagelaaalgaeklilltdvagilenkedpsslikeidikgv
    kkmiedgkvaggmipkvkccirslaqgvktasiidgrrqhsllheimsdegagtmitg
    

    Sequence, based on observed residues (ATOM records): (download)
    >2rd5B (B:)
    spdyrveilseslpfiqkfrgktivvkyggaamtspelkssvvsdlvllacvglrpilvh
    gggpdinrylkqlnipaefrdglrvtdattmeivsmvlvgkvnknlvslinaagatavgl
    sghdgrlltarpvpnsaqlgfvgevarvdpsvlrplvdygyipviasvaaddsgqaynin
    adtvagelaaalgaeklilltdvagilenkedpsslikeidikgvkkmiedgkvaggmip
    kvkccirslaqgvktasiidgrrqhsllheimsdegagtmitg
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >2rd5C (C:)
    mqissdyipdskfykveaivrpwriqqvssallkigirgvtvsdvrgfgaqggsterhgg
    sefsedkfvakvkmeivvkkdqvesvintiiegartgeigdgkifvlpvsdvirvrtger
    gekaekmtgdmlsps
    

    Sequence, based on observed residues (ATOM records): (download)
    >2rd5C (C:)
    dyipdskfykveaivrpwriqqvssallkigirgvtvsdvrgfgaqggsterhggsefse
    dkfvakvkmeivvkkdqvesvintiiegartgeigdgkifvlpvsdvirvrtgergekae
    kmtgd
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >2rd5D (D:)
    mqissdyipdskfykveaivrpwriqqvssallkigirgvtvsdvrgfgaqggsterhgg
    sefsedkfvakvkmeivvkkdqvesvintiiegartgeigdgkifvlpvsdvirvrtger
    gekaekmtgdmlsps
    

    Sequence, based on observed residues (ATOM records): (download)
    >2rd5D (D:)
    dyipdskfykveaivrpwriqqvssallkigirgvtvsdvrgfgaqggsterhggsefse
    dkfvakvkmeivvkkdqvesvintiiegartgeigdgkifvlpvsdvirvrtgergekae
    kmtgdm