SCOPe 2.08: Species: Human immunodeficiency virus 1 [TaxId: 11676]

Lineage for Species: Human immunodeficiency virus 1 [TaxId: 11676]

Root: SCOPe 2.08
Class a: All alpha proteins [46456] (290 folds)
Fold a.28: Acyl carrier protein-like [47335] (3 superfamilies)
4 helices, bundle; helix 3 is shorter than others; up-and-down
Superfamily a.28.3: Retrovirus capsid dimerization domain-like [47353] (3 families)
Family a.28.3.0: automated matches [191629] (1 protein)
not a true family
Protein automated matches [191156] (12 species)
not a true protein
Species Human immunodeficiency virus 1 [TaxId:11676] [233043] (33 PDB entries)

PDB entries in Species: Human immunodeficiency virus 1 [TaxId: 11676]:

Domain(s) for 2lf4:
- Domain d2lf4a2: 2lf4 A:148-231 [242867]
  Other proteins in same PDB: d2lf4a1
  automated match to d3ntea2
  mutant
Domain(s) for 3nte:
1. Domain d3ntea2: 3nte A:148-221 [233046]
  Other proteins in same PDB: d3ntea1, d3nteb1
  automated match to d1e6jp1
  complexed with fe, i3m, iod, na
2. Domain d3nteb2: 3nte B:148-221 [233044]
  Other proteins in same PDB: d3ntea1, d3nteb1
  automated match to d1e6jp1
  complexed with fe, i3m, iod, na
Domain(s) for 3p05:
1. Domain d3p05a2: 3p05 A:148-219 [239594]
  Other proteins in same PDB: d3p05a1, d3p05b1, d3p05c1, d3p05d1, d3p05e1
  automated match to d3p05b2
  complexed with iod
2. Domain d3p05b2: 3p05 B:148-219 [233182]
  Other proteins in same PDB: d3p05a1, d3p05b1, d3p05c1, d3p05d1, d3p05e1
  automated match to d1e6jp1
  complexed with iod
3. Domain d3p05c2: 3p05 C:148-219 [233186]
  Other proteins in same PDB: d3p05a1, d3p05b1, d3p05c1, d3p05d1, d3p05e1
  automated match to d1e6jp1
  complexed with iod
4. Domain d3p05e2: 3p05 E:148-219 [239596]
  Other proteins in same PDB: d3p05a1, d3p05b1, d3p05c1, d3p05d1, d3p05e1
  automated match to d3p05b2
  complexed with iod
Domain(s) for 4xrq:
- Domain d4xrqa2: 4xrq A:148-219 [275063]
  Other proteins in same PDB: d4xrqa1
  automated match to d2m8pa2
  complexed with 1b0
Domain(s) for 5hgl:
1. Domain d5hgla2: 5hgl A:148-219 [321006]
  Other proteins in same PDB: d5hgla1, d5hglb1, d5hglc1, d5hgld1, d5hgle1, d5hglf1
  automated match to d2m8pa2
  complexed with 1b0, cl
2. Domain d5hglb2: 5hgl B:148-219 [321022]
  Other proteins in same PDB: d5hgla1, d5hglb1, d5hglc1, d5hgld1, d5hgle1, d5hglf1
  automated match to d2m8pa2
  complexed with 1b0, cl
3. Domain d5hglc2: 5hgl C:148-219 [321036]
  Other proteins in same PDB: d5hgla1, d5hglb1, d5hglc1, d5hgld1, d5hgle1, d5hglf1
  automated match to d2m8pa2
  complexed with 1b0, cl
4. Domain d5hgld2: 5hgl D:148-219 [321014]
  Other proteins in same PDB: d5hgla1, d5hglb1, d5hglc1, d5hgld1, d5hgle1, d5hglf1
  automated match to d2m8pa2
  complexed with 1b0, cl
5. Domain d5hgle2: 5hgl E:148-219 [321020]
  Other proteins in same PDB: d5hgla1, d5hglb1, d5hglc1, d5hgld1, d5hgle1, d5hglf1
  automated match to d2m8pa2
  complexed with 1b0, cl
6. Domain d5hglf2: 5hgl F:148-219 [321018]
  Other proteins in same PDB: d5hgla1, d5hglb1, d5hglc1, d5hgld1, d5hgle1, d5hglf1
  automated match to d2m8pa2
  complexed with 1b0, cl
Domain(s) for 5hgm:
- Domain d5hgma2: 5hgm A:148-219 [321024]
  Other proteins in same PDB: d5hgma1
  automated match to d2m8pa2
  complexed with dtp
Domain(s) for 5hgn:
- Domain d5hgna2: 5hgn A:148-219 [321123]
  Other proteins in same PDB: d5hgna1
  automated match to d2m8pa2
Domain(s) for 5hgo:
- Domain d5hgoa2: 5hgo A:148-219 [321008]
  Other proteins in same PDB: d5hgoa1
  automated match to d2m8pa2
  mutant
Domain(s) for 5o2u:
1. Domain d5o2ua_: 5o2u A: [335771]
  Other proteins in same PDB: d5o2ub_, d5o2ud_
  automated match to d2koda_
2. Domain d5o2uc_: 5o2u C: [335669]
  Other proteins in same PDB: d5o2ub_, d5o2ud_
  automated match to d2koda_
Domain(s) for 5w4o:
- Domain d5w4oa2: 5w4o A:148-221 [353800]
  Other proteins in same PDB: d5w4oa1
  automated match to d2m8pa2
  complexed with cl, iod; mutant
Domain(s) for 5w4p:
- Domain d5w4pa2: 5w4p A:148-221 [353794]
  Other proteins in same PDB: d5w4pa1
  automated match to d2m8pa2
  complexed with cl, iod; mutant
Domain(s) for 5w4q:
- Domain d5w4qa2: 5w4q A:148-221 [353798]
  Other proteins in same PDB: d5w4qa1
  automated match to d2m8pa2
  complexed with cl, iod; mutant
Domain(s) for 6axr:
- Domain d6axra2: 6axr A:148-221 [357270]
  Other proteins in same PDB: d6axra1
  automated match to d2m8pa2
  complexed with cl, iod; mutant
Domain(s) for 6axs:
- Domain d6axsa2: 6axs A:148-221 [357264]
  Other proteins in same PDB: d6axsa1
  automated match to d2m8pa2
  complexed with cl, iod; mutant
Domain(s) for 6axt:
- Domain d6axta2: 6axt A:148-221 [357269]
  Other proteins in same PDB: d6axta1
  automated match to d2m8pa2
  complexed with cl, iod; mutant
Domain(s) for 6axv:
- Domain d6axva2: 6axv A:148-221 [357261]
  Other proteins in same PDB: d6axva1
  automated match to d2m8pa2
  complexed with 1b0, cl, iod; mutant
Domain(s) for 6axw:
- Domain d6axwa2: 6axw A:148-220 [357487]
  Other proteins in same PDB: d6axwa1
  automated match to d2m8pa2
  complexed with cl, iod; mutant
Domain(s) for 6axx:
- Domain d6axxa2: 6axx A:148-220 [357365]
  Other proteins in same PDB: d6axxa1
  automated match to d2m8pa2
  complexed with cl, iod; mutant
Domain(s) for 6axy:
- Domain d6axya2: 6axy A:148-221 [357313]
  Other proteins in same PDB: d6axya1
  automated match to d2m8pa2
  complexed with cl, iod; mutant
Domain(s) for 6b2g:
- Domain d6b2ga2: 6b2g A:148-221 [357980]
  Other proteins in same PDB: d6b2ga1
  automated match to d2m8pa2
  complexed with cl, iod; mutant
Domain(s) for 6b2h:
- Domain d6b2ha2: 6b2h A:148-221 [357959]
  Other proteins in same PDB: d6b2ha1
  automated match to d2m8pa2
  complexed with cl, iod; mutant
Domain(s) for 6b2i:
- Domain d6b2ia2: 6b2i A:148-221 [357952]
  Other proteins in same PDB: d6b2ia1
  automated match to d2m8pa2
  complexed with cl, iod; mutant
Domain(s) for 6b2j:
- Domain d6b2ja2: 6b2j A:148-221 [357961]
  Other proteins in same PDB: d6b2ja1
  automated match to d2m8pa2
  complexed with cl, iod; mutant
Domain(s) for 6b2k:
- Domain d6b2ka2: 6b2k A:148-221 [357960]
  Other proteins in same PDB: d6b2ka1
  automated match to d2m8pa2
  complexed with cl, iod; mutant
Domain(s) for 6erm:
- Domain d6erma2: 6erm A:148-219 [359836]
  Other proteins in same PDB: d6erma1
  automated match to d5hgna2
  complexed with azt
Domain(s) for 6ern:
- Domain d6erna2: 6ern A:148-219 [359808]
  Other proteins in same PDB: d6erna1, d6erna3
  automated match to d5hgna2
  complexed with atp
Domain(s) for 6es8:
- Domain d6es8a2: 6es8 A:148-219 [356054]
  Other proteins in same PDB: d6es8a1
  automated match to d5hgna2
  complexed with ihp
Domain(s) for 6obh:
1. Domain d6obha2: 6obh A:148-220 [373512]
  Other proteins in same PDB: d6obha1, d6obhb1, d6obhc1, d6obhd1, d6obhe1, d6obhf1
  automated match to d2m8pa2
  complexed with na
2. Domain d6obhb2: 6obh B:148-221 [373458]
  Other proteins in same PDB: d6obha1, d6obhb1, d6obhc1, d6obhd1, d6obhe1, d6obhf1
  automated match to d2m8pa2
  complexed with na
3. Domain d6obhc2: 6obh C:148-220 [373469]
  Other proteins in same PDB: d6obha1, d6obhb1, d6obhc1, d6obhd1, d6obhe1, d6obhf1
  automated match to d2m8pa2
  complexed with na
4. Domain d6obhd2: 6obh D:148-221 [373465]
  Other proteins in same PDB: d6obha1, d6obhb1, d6obhc1, d6obhd1, d6obhe1, d6obhf1
  automated match to d2m8pa2
  complexed with na
5. Domain d6obhe2: 6obh E:148-220 [373479]
  Other proteins in same PDB: d6obha1, d6obhb1, d6obhc1, d6obhd1, d6obhe1, d6obhf1
  automated match to d2m8pa2
  complexed with na
6. Domain d6obhf2: 6obh F:148-221 [373472]
  Other proteins in same PDB: d6obha1, d6obhb1, d6obhc1, d6obhd1, d6obhe1, d6obhf1
  automated match to d2m8pa2
  complexed with na
Domain(s) for 6omt:
- Domain d6omta2: 6omt A:148-219 [373207]
  Other proteins in same PDB: d6omta1
  automated match to d2m8pa2
  mutant
Domain(s) for 6r6q:
- Domain d6r6qa2: 6r6q A:148-219 [385050]
  Other proteins in same PDB: d6r6qa1
  automated match to d5hgna2
Domain(s) for 6r8c:
- Domain d6r8ca2: 6r8c A:148-219 [385008]
  Other proteins in same PDB: d6r8ca1
  automated match to d5hgna2
  complexed with 5my
Domain(s) for 6v2f:
1. Domain d6v2fa2: 6v2f A:148-219 [388699]
  Other proteins in same PDB: d6v2fa1, d6v2fb1, d6v2fc1, d6v2fd1, d6v2fe1, d6v2ff1
  automated match to d2m8pa2
  complexed with qng
2. Domain d6v2fb2: 6v2f B:148-219 [388668]
  Other proteins in same PDB: d6v2fa1, d6v2fb1, d6v2fc1, d6v2fd1, d6v2fe1, d6v2ff1
  automated match to d2m8pa2
  complexed with qng
3. Domain d6v2fc2: 6v2f C:148-219 [388651]
  Other proteins in same PDB: d6v2fa1, d6v2fb1, d6v2fc1, d6v2fd1, d6v2fe1, d6v2ff1
  automated match to d2m8pa2
  complexed with qng
4. Domain d6v2fd2: 6v2f D:148-219 [388672]
  Other proteins in same PDB: d6v2fa1, d6v2fb1, d6v2fc1, d6v2fd1, d6v2fe1, d6v2ff1
  automated match to d2m8pa2
  complexed with qng
5. Domain d6v2fe2: 6v2f E:148-219 [388656]
  Other proteins in same PDB: d6v2fa1, d6v2fb1, d6v2fc1, d6v2fd1, d6v2fe1, d6v2ff1
  automated match to d2m8pa2
  complexed with qng
6. Domain d6v2ff2: 6v2f F:148-219 [388686]
  Other proteins in same PDB: d6v2fa1, d6v2fb1, d6v2fc1, d6v2fd1, d6v2fe1, d6v2ff1
  automated match to d2m8pa2
  complexed with qng
Domain(s) for 6vkv:
1. Domain d6vkva2: 6vkv A:148-220 [392720]
  Other proteins in same PDB: d6vkva1, d6vkvb1, d6vkvc1
  automated match to d2m8pa2
  complexed with cl, iod, qng
2. Domain d6vkvb2: 6vkv B:148-220 [392729]
  Other proteins in same PDB: d6vkva1, d6vkvb1, d6vkvc1
  automated match to d2m8pa2
  complexed with cl, iod, qng
3. Domain d6vkvc2: 6vkv C:148-220 [392880]
  Other proteins in same PDB: d6vkva1, d6vkvb1, d6vkvc1
  automated match to d2m8pa2
  complexed with cl, iod, qng

More info for Species Human immunodeficiency virus 1 [TaxId:11676] from a.28.3.0 automated matches

Timeline for Species Human immunodeficiency virus 1 [TaxId:11676] from a.28.3.0 automated matches:

Species Human immunodeficiency virus 1 [TaxId:11676] from a.28.3.0 automated matches first appeared in SCOPe 2.03
Species Human immunodeficiency virus 1 [TaxId:11676] from a.28.3.0 automated matches appears in SCOPe 2.07