Lineage for Species: Human immunodeficiency virus 1 [TaxId: 11676]

  1. Root: SCOPe 2.07
  2. 2299346Class a: All alpha proteins [46456] (289 folds)
  3. 2316392Fold a.28: Acyl carrier protein-like [47335] (3 superfamilies)
    4 helices, bundle; helix 3 is shorter than others; up-and-down
  4. 2316654Superfamily a.28.3: Retrovirus capsid dimerization domain-like [47353] (3 families) (S)
  5. 2316731Family a.28.3.0: automated matches [191629] (1 protein)
    not a true family
  6. 2316732Protein automated matches [191156] (10 species)
    not a true protein
  7. 2316748Species Human immunodeficiency virus 1 [TaxId:11676] [233043] (24 PDB entries)

PDB entries in Species: Human immunodeficiency virus 1 [TaxId: 11676]:

  1. Domain(s) for 2lf4:
  2. Domain(s) for 3nte:
    1. 2316750Domain d3ntea2: 3nte A:148-221 [233046]
      Other proteins in same PDB: d3ntea1, d3nteb1
      automated match to d1e6jp1
      complexed with fe, i3m, iod, na
    2. 2316751Domain d3nteb2: 3nte B:148-221 [233044]
      Other proteins in same PDB: d3ntea1, d3nteb1
      automated match to d1e6jp1
      complexed with fe, i3m, iod, na
  3. Domain(s) for 3p05:
    1. 2316754Domain d3p05a2: 3p05 A:148-219 [239594]
      Other proteins in same PDB: d3p05a1, d3p05b1, d3p05c1, d3p05d1, d3p05e1
      automated match to d3p05b2
      complexed with iod
    2. 2316755Domain d3p05b2: 3p05 B:148-219 [233182]
      Other proteins in same PDB: d3p05a1, d3p05b1, d3p05c1, d3p05d1, d3p05e1
      automated match to d1e6jp1
      complexed with iod
    3. 2316756Domain d3p05c2: 3p05 C:148-219 [233186]
      Other proteins in same PDB: d3p05a1, d3p05b1, d3p05c1, d3p05d1, d3p05e1
      automated match to d1e6jp1
      complexed with iod
    4. 2316757Domain d3p05e2: 3p05 E:148-219 [239596]
      Other proteins in same PDB: d3p05a1, d3p05b1, d3p05c1, d3p05d1, d3p05e1
      automated match to d3p05b2
      complexed with iod
  4. Domain(s) for 5hgl:
    1. 2316760Domain d5hgla2: 5hgl A:148-219 [321006]
      Other proteins in same PDB: d5hgla1, d5hglb1, d5hglc1, d5hgld1, d5hgle1, d5hglf1
      automated match to d2m8pa2
      complexed with 1b0, cl
    2. 2316761Domain d5hglb2: 5hgl B:148-219 [321022]
      Other proteins in same PDB: d5hgla1, d5hglb1, d5hglc1, d5hgld1, d5hgle1, d5hglf1
      automated match to d2m8pa2
      complexed with 1b0, cl
    3. 2316762Domain d5hglc2: 5hgl C:148-219 [321036]
      Other proteins in same PDB: d5hgla1, d5hglb1, d5hglc1, d5hgld1, d5hgle1, d5hglf1
      automated match to d2m8pa2
      complexed with 1b0, cl
    4. 2316763Domain d5hgld2: 5hgl D:148-219 [321014]
      Other proteins in same PDB: d5hgla1, d5hglb1, d5hglc1, d5hgld1, d5hgle1, d5hglf1
      automated match to d2m8pa2
      complexed with 1b0, cl
    5. 2316764Domain d5hgle2: 5hgl E:148-219 [321020]
      Other proteins in same PDB: d5hgla1, d5hglb1, d5hglc1, d5hgld1, d5hgle1, d5hglf1
      automated match to d2m8pa2
      complexed with 1b0, cl
    6. 2316765Domain d5hglf2: 5hgl F:148-219 [321018]
      Other proteins in same PDB: d5hgla1, d5hglb1, d5hglc1, d5hgld1, d5hgle1, d5hglf1
      automated match to d2m8pa2
      complexed with 1b0, cl
  5. Domain(s) for 5hgm:
  6. Domain(s) for 5hgn:
  7. Domain(s) for 5hgo:
  8. Domain(s) for 5o2u:
    1. 2316758Domain d5o2ua_: 5o2u A: [335771]
      Other proteins in same PDB: d5o2ub_, d5o2ud_
      automated match to d2koda_
    2. 2316759Domain d5o2uc_: 5o2u C: [335669]
      Other proteins in same PDB: d5o2ub_, d5o2ud_
      automated match to d2koda_
  9. Domain(s) for 5w4o:
  10. Domain(s) for 5w4p:
  11. Domain(s) for 5w4q:
  12. Domain(s) for 6axr:
  13. Domain(s) for 6axs:
  14. Domain(s) for 6axt:
  15. Domain(s) for 6axv:
  16. Domain(s) for 6axw:
  17. Domain(s) for 6axx:
  18. Domain(s) for 6axy:
  19. Domain(s) for 6b2g:
  20. Domain(s) for 6b2h:
  21. Domain(s) for 6b2i:
  22. Domain(s) for 6b2j:
  23. Domain(s) for 6b2k:
  24. Domain(s) for 6es8:

More info for Species Human immunodeficiency virus 1 [TaxId:11676] from a.28.3.0 automated matches

Timeline for Species Human immunodeficiency virus 1 [TaxId:11676] from a.28.3.0 automated matches: