Lineage for Species: Human immunodeficiency virus 1 [TaxId: 11676]

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 1991985Fold a.28: Acyl carrier protein-like [47335] (3 superfamilies)
    4 helices, bundle; helix 3 is shorter than others; up-and-down
  4. 1992228Superfamily a.28.3: Retrovirus capsid dimerization domain-like [47353] (3 families) (S)
  5. 1992302Family a.28.3.0: automated matches [191629] (1 protein)
    not a true family
  6. 1992303Protein automated matches [191156] (10 species)
    not a true protein
  7. 1992316Species Human immunodeficiency virus 1 [TaxId:11676] [233043] (8 PDB entries)

PDB entries in Species: Human immunodeficiency virus 1 [TaxId: 11676]:

  1. Domain(s) for 2lf4:
  2. Domain(s) for 3nte:
    1. 1992317Domain d3ntea2: 3nte A:148-221 [233046]
      Other proteins in same PDB: d3ntea1, d3nteb1
      automated match to d1e6jp1
      complexed with fe, i3m, iod, na
    2. 1992318Domain d3nteb2: 3nte B:148-221 [233044]
      Other proteins in same PDB: d3ntea1, d3nteb1
      automated match to d1e6jp1
      complexed with fe, i3m, iod, na
  3. Domain(s) for 3p05:
    1. 1992319Domain d3p05a2: 3p05 A:148-219 [239594]
      Other proteins in same PDB: d3p05a1, d3p05b1, d3p05c1, d3p05d1, d3p05e1
      automated match to d3p05b2
      complexed with iod
    2. 1992320Domain d3p05b2: 3p05 B:148-219 [233182]
      Other proteins in same PDB: d3p05a1, d3p05b1, d3p05c1, d3p05d1, d3p05e1
      automated match to d1e6jp1
      complexed with iod
    3. 1992321Domain d3p05c2: 3p05 C:148-219 [233186]
      Other proteins in same PDB: d3p05a1, d3p05b1, d3p05c1, d3p05d1, d3p05e1
      automated match to d1e6jp1
      complexed with iod
    4. 1992322Domain d3p05e2: 3p05 E:148-219 [239596]
      Other proteins in same PDB: d3p05a1, d3p05b1, d3p05c1, d3p05d1, d3p05e1
      automated match to d3p05b2
      complexed with iod
  4. Domain(s) for 5hgl:
    1. 2277705Domain d5hgla2: 5hgl A:148-219 [321006]
      Other proteins in same PDB: d5hgla1, d5hglb1, d5hglc1, d5hgld1, d5hgle1, d5hglf1
      automated match to d2m8pa2
      complexed with 1b0, cl
    2. 2277713Domain d5hgld2: 5hgl D:148-219 [321014]
      Other proteins in same PDB: d5hgla1, d5hglb1, d5hglc1, d5hgld1, d5hgle1, d5hglf1
      automated match to d2m8pa2
      complexed with 1b0, cl
    3. 2277717Domain d5hglf2: 5hgl F:148-219 [321018]
      Other proteins in same PDB: d5hgla1, d5hglb1, d5hglc1, d5hgld1, d5hgle1, d5hglf1
      automated match to d2m8pa2
      complexed with 1b0, cl
    4. 2277719Domain d5hgle2: 5hgl E:148-219 [321020]
      Other proteins in same PDB: d5hgla1, d5hglb1, d5hglc1, d5hgld1, d5hgle1, d5hglf1
      automated match to d2m8pa2
      complexed with 1b0, cl
    5. 2277721Domain d5hglb2: 5hgl B:148-219 [321022]
      Other proteins in same PDB: d5hgla1, d5hglb1, d5hglc1, d5hgld1, d5hgle1, d5hglf1
      automated match to d2m8pa2
      complexed with 1b0, cl
    6. 2277735Domain d5hglc2: 5hgl C:148-219 [321036]
      Other proteins in same PDB: d5hgla1, d5hglb1, d5hglc1, d5hgld1, d5hgle1, d5hglf1
      automated match to d2m8pa2
      complexed with 1b0, cl
  5. Domain(s) for 5hgm:
  6. Domain(s) for 5hgn:
  7. Domain(s) for 5hgo:
  8. Domain(s) for 5o2u:
    1. 2292368Domain d5o2uc_: 5o2u C: [335669]
      Other proteins in same PDB: d5o2ub_, d5o2ud_
      automated match to d2koda_
    2. 2292470Domain d5o2ua_: 5o2u A: [335771]
      Other proteins in same PDB: d5o2ub_, d5o2ud_
      automated match to d2koda_

More info for Species Human immunodeficiency virus 1 [TaxId:11676] from a.28.3.0 automated matches

Timeline for Species Human immunodeficiency virus 1 [TaxId:11676] from a.28.3.0 automated matches: