PDB entry 6obh

View 6obh on RCSB PDB site
Description: Structure of HIV-1 CA 1/2-hexamer
Class: viral protein
Keywords: capsid, disulfide, VIRAL PROTEIN
Deposited on 2019-03-20, released 2019-08-28
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-01-01, with a file datestamp of 2019-12-27.
Experiment type: XRAY
Resolution: 2.96 Å
R-factor: N/A
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ca
    Species: HUMAN IMMUNODEFICIENCY VIRUS 1 [TaxId:11676]
    Gene: GAG
    Database cross-references and differences (RAF-indexed):
    • Uniprot T2CI25 (1-End)
      • engineered mutation (14)
      • engineered mutation (184-185)
    Domains in SCOPe 2.08: d6obha1, d6obha2
  • Chain 'B':
    Compound: ca
    Species: HUMAN IMMUNODEFICIENCY VIRUS 1 [TaxId:11676]
    Gene: GAG
    Database cross-references and differences (RAF-indexed):
    • Uniprot B6DRA0 (1-End)
      • engineered mutation (45)
      • engineered mutation (54)
      • engineered mutation (184-185)
    Domains in SCOPe 2.08: d6obhb1, d6obhb2
  • Chain 'C':
    Compound: ca
    Species: HUMAN IMMUNODEFICIENCY VIRUS 1 [TaxId:11676]
    Gene: GAG
    Database cross-references and differences (RAF-indexed):
    • Uniprot T2CI25 (1-End)
      • engineered mutation (42)
      • engineered mutation (184-185)
    Domains in SCOPe 2.08: d6obhc1, d6obhc2
  • Chain 'D':
    Compound: ca
    Species: HUMAN IMMUNODEFICIENCY VIRUS 1 [TaxId:11676]
    Gene: GAG
    Database cross-references and differences (RAF-indexed):
    • Uniprot T2CI25 (1-End)
      • engineered mutation (14)
      • engineered mutation (184-185)
    Domains in SCOPe 2.08: d6obhd1, d6obhd2
  • Chain 'E':
    Compound: ca
    Species: HUMAN IMMUNODEFICIENCY VIRUS 1 [TaxId:11676]
    Gene: GAG
    Database cross-references and differences (RAF-indexed):
    • Uniprot B6DRA0 (1-End)
      • engineered mutation (45)
      • engineered mutation (54)
      • engineered mutation (184-185)
    Domains in SCOPe 2.08: d6obhe1, d6obhe2
  • Chain 'F':
    Compound: ca
    Species: HUMAN IMMUNODEFICIENCY VIRUS 1 [TaxId:11676]
    Gene: GAG
    Database cross-references and differences (RAF-indexed):
    • Uniprot T2CI25 (1-End)
      • engineered mutation (42)
      • engineered mutation (184-185)
    Domains in SCOPe 2.08: d6obhf1, d6obhf2
  • Heterogens: NA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6obhA (A:)
mpivqnlqgqmvhqcisprtlnawvkvveekafspevipmfsalsegatpqdlntmlntv
gghqaamqmlketineeaaewdrlhpvhagpiapgqmreprgsdiagttstlqeqigwmt
hnppipvgeiykrwiilglnkivrmysptsildirqgpkepfrdyvdrfyktlraeqasq
evknaatetllvqnanpdcktilkalgpgatleemmtacqgvggpghkarvl

    Sequence, based on observed residues (ATOM records): (download) 
    >6obhA (A:)
pivqnlqgqmvhqcisprtlnawvkvveekafspevipmfsalsegatpqdlntmlntvg
ghqaamqmlketineeaaewdrlhpvhagpiapgqmreprgsdiagttstlqeqigwmth
nppipvgeiykrwiilglnkivrmysptsildirqgpkepfrdyvdrfyktlraeqasqe
vknaatetllvqnanpdcktilkalgpgatleemmtacqg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6obhB (B:)
mpivqnlqgqmvhqaisprtlnawvkvveekafspevipmfsalscgatpqdlncmlntv
gghqaamqmlketineeaaewdrlhpvhagpiapgqmreprgsdiagttstlqeqigwmt
hnppipvgeiykrwiilglnkivrmysptsildirqgpkepfrdyvdrfyktlraeqasq
evknaatetllvqnanpdcktilkalgpgatleemmtacqgvggpghkarvl

    Sequence, based on observed residues (ATOM records): (download) 
    >6obhB (B:)
pivqnlhqaisprtlnawvkvveekafspevipmfsalscgatpqdlncmlntvgghqaa
mqmlketineeaaewdrlhpvhpiapgqmreprgsdiagttstlqeqigwmthnppipvg
eiykrwiilglnkivrmysptsildirqgpkepfrdyvdrfyktlraeqasqevknaate
tllvqnanpdcktilkalgpgatleemmtacqgv

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6obhC (C:)
mpivqnlqgqmvhqaisprtlnawvkvveekafspevipmfsclsegatpqdlntmlntv
gghqaamqmlketineeaaewdrlhpvhagpiapgqmreprgsdiagttstlqeqigwmt
hnppipvgeiykrwiilglnkivrmysptsildirqgpkepfrdyvdrfyktlraeqasq
evknaatetllvqnanpdcktilkalgpgatleemmtacqgvggpghkarvl

    Sequence, based on observed residues (ATOM records): (download) 
    >6obhC (C:)
pivqnlqgqmvhqaisprtlnawvkvveekafspevipmfsclsegatpqdlntmlntvg
ghqaamqmlketineeaaewdrlhpvhagpiapgqmreprgsdiagttstlqeqigwmth
nppipvgeiykrwiilglnkivrmysptsildirqgpkepfrdyvdrfyktlraeqasqe
vknaatetllvqnanpdcktilkalgpgatleemmtacqg

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6obhD (D:)
mpivqnlqgqmvhqcisprtlnawvkvveekafspevipmfsalsegatpqdlntmlntv
gghqaamqmlketineeaaewdrlhpvhagpiapgqmreprgsdiagttstlqeqigwmt
hnppipvgeiykrwiilglnkivrmysptsildirqgpkepfrdyvdrfyktlraeqasq
evknaatetllvqnanpdcktilkalgpgatleemmtacqgvggpghkarvl

    Sequence, based on observed residues (ATOM records): (download) 
    >6obhD (D:)
pivqnlhqcisprtlnawvkvveekafspevipmfsalsegatpqdlntmlntvgghqaa
mqmlketineeaaewdrlhpvhpiapgqmreprgsdiagttstlqeqigwmthnppipvg
eiykrwiilglnkivrmysptsildirqgpkepfrdyvdrfyktlraeqasqevknaate
tllvqnanpdcktilkalgpgatleemmtacqgv

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >6obhE (E:)
mpivqnlqgqmvhqaisprtlnawvkvveekafspevipmfsalscgatpqdlncmlntv
gghqaamqmlketineeaaewdrlhpvhagpiapgqmreprgsdiagttstlqeqigwmt
hnppipvgeiykrwiilglnkivrmysptsildirqgpkepfrdyvdrfyktlraeqasq
evknaatetllvqnanpdcktilkalgpgatleemmtacqgvggpghkarvl

    Sequence, based on observed residues (ATOM records): (download) 
    >6obhE (E:)
pivqnlqgqmvhqaisprtlnawvkvveekafspevipmfsalscgatpqdlncmlntvg
ghqaamqmlketineeaaewdrlhpvhagpiapgqmreprgsdiagttstlqeqigwmth
nppipvgeiykrwiilglnkivrmysptsildirqgpkepfrdyvdrfyktlraeqasqe
vknaatetllvqnanpdcktilkalgpgatleemmtacqg

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >6obhF (F:)
mpivqnlqgqmvhqaisprtlnawvkvveekafspevipmfsclsegatpqdlntmlntv
gghqaamqmlketineeaaewdrlhpvhagpiapgqmreprgsdiagttstlqeqigwmt
hnppipvgeiykrwiilglnkivrmysptsildirqgpkepfrdyvdrfyktlraeqasq
evknaatetllvqnanpdcktilkalgpgatleemmtacqgvggpghkarvl

    Sequence, based on observed residues (ATOM records): (download) 
    >6obhF (F:)
pivqnlhqaisprtlnawvkvveekafspevipmfsclsegatpqdlntmlntvgghqaa
mqmlketineeaaewdrlhpvhpiapgqmreprgsdiagttstlqeqigwmthnppipvg
eiykrwiilglnkivrmysptsildirqgpkepfrdyvdrfyktlraeqasqevknaate
tllvqnanpdcktilkalgpgatleemmtacqgv