Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 1991985Fold a.28: Acyl carrier protein-like [47335] (3 superfamilies)
    4 helices, bundle; helix 3 is shorter than others; up-and-down
  4. 1992228Superfamily a.28.3: Retrovirus capsid dimerization domain-like [47353] (3 families) (S)
  5. 1992302Family a.28.3.0: automated matches [191629] (1 protein)
    not a true family
  6. 1992303Protein automated matches [191156] (10 species)
    not a true protein

Species:

  1. 1992304Bovine leukemia virus [TaxId:11901] [273638] (1 PDB entry)
  2. 1992311Human (Homo sapiens) [TaxId:9606] [189328] (2 PDB entries)
    1. Domains for 3lhr:
      1. 1992312Domain d3lhra1: 3lhr A:3-92 [180288]
        Other proteins in same PDB: d3lhra2, d3lhrb2
        automated match to d1y7qa1
        complexed with cl, emc, mg, peg
      2. 1992313Domain d3lhrb1: 3lhr B:3-93 [180289]
        Other proteins in same PDB: d3lhra2, d3lhrb2
        automated match to d1y7qa1
        complexed with cl, emc, mg, peg
    2. Domains for 4bhx:
      1. 1992314Domain d4bhxa1: 4bhx A:3-90 [196820]
        Other proteins in same PDB: d4bhxa2, d4bhxb2
        automated match to d3lhra_
        complexed with edo, peg, pge
      2. 1992315Domain d4bhxb1: 4bhx B:3-92 [201624]
        Other proteins in same PDB: d4bhxa2, d4bhxb2
        automated match to d4bhxa_
        complexed with edo, peg, pge
  3. 1992316Human immunodeficiency virus 1 [TaxId:11676] [233043] (8 PDB entries)
    1. Domain for 2lf4:
    2. Domains for 3nte:
      1. 1992317Domain d3ntea2: 3nte A:148-221 [233046]
        Other proteins in same PDB: d3ntea1, d3nteb1
        automated match to d1e6jp1
        complexed with fe, i3m, iod, na
      2. 1992318Domain d3nteb2: 3nte B:148-221 [233044]
        Other proteins in same PDB: d3ntea1, d3nteb1
        automated match to d1e6jp1
        complexed with fe, i3m, iod, na
    3. Domains for 3p05:
      1. 1992319Domain d3p05a2: 3p05 A:148-219 [239594]
        Other proteins in same PDB: d3p05a1, d3p05b1, d3p05c1, d3p05d1, d3p05e1
        automated match to d3p05b2
        complexed with iod
      2. 1992320Domain d3p05b2: 3p05 B:148-219 [233182]
        Other proteins in same PDB: d3p05a1, d3p05b1, d3p05c1, d3p05d1, d3p05e1
        automated match to d1e6jp1
        complexed with iod
      3. 1992321Domain d3p05c2: 3p05 C:148-219 [233186]
        Other proteins in same PDB: d3p05a1, d3p05b1, d3p05c1, d3p05d1, d3p05e1
        automated match to d1e6jp1
        complexed with iod
      4. 1992322Domain d3p05e2: 3p05 E:148-219 [239596]
        Other proteins in same PDB: d3p05a1, d3p05b1, d3p05c1, d3p05d1, d3p05e1
        automated match to d3p05b2
        complexed with iod
    4. Domains for 5hgl:
      1. 2277705Domain d5hgla2: 5hgl A:148-219 [321006]
        Other proteins in same PDB: d5hgla1, d5hglb1, d5hglc1, d5hgld1, d5hgle1, d5hglf1
        automated match to d2m8pa2
        complexed with 1b0, cl
      2. 2277713Domain d5hgld2: 5hgl D:148-219 [321014]
        Other proteins in same PDB: d5hgla1, d5hglb1, d5hglc1, d5hgld1, d5hgle1, d5hglf1
        automated match to d2m8pa2
        complexed with 1b0, cl
      3. 2277717Domain d5hglf2: 5hgl F:148-219 [321018]
        Other proteins in same PDB: d5hgla1, d5hglb1, d5hglc1, d5hgld1, d5hgle1, d5hglf1
        automated match to d2m8pa2
        complexed with 1b0, cl
      4. 2277719Domain d5hgle2: 5hgl E:148-219 [321020]
        Other proteins in same PDB: d5hgla1, d5hglb1, d5hglc1, d5hgld1, d5hgle1, d5hglf1
        automated match to d2m8pa2
        complexed with 1b0, cl
      5. 2277721Domain d5hglb2: 5hgl B:148-219 [321022]
        Other proteins in same PDB: d5hgla1, d5hglb1, d5hglc1, d5hgld1, d5hgle1, d5hglf1
        automated match to d2m8pa2
        complexed with 1b0, cl
      6. 2277735Domain d5hglc2: 5hgl C:148-219 [321036]
        Other proteins in same PDB: d5hgla1, d5hglb1, d5hglc1, d5hgld1, d5hgle1, d5hglf1
        automated match to d2m8pa2
        complexed with 1b0, cl
    5. Domain for 5hgm:
    6. Domain for 5hgn:
    7. Domain for 5hgo:
    8. Domains for 5o2u:
      1. 2292368Domain d5o2uc_: 5o2u C: [335669]
        Other proteins in same PDB: d5o2ub_, d5o2ud_
        automated match to d2koda_
      2. 2292470Domain d5o2ua_: 5o2u A: [335771]
        Other proteins in same PDB: d5o2ub_, d5o2ud_
        automated match to d2koda_
  4. 1992324Human immunodeficiency virus type 1 (new york-5 isolate) [TaxId:11698] [232387] (4 PDB entries)
    1. Domain for 3h47:
    2. Domains for 3h4e:
      1. 1992327Domain d3h4ea2: 3h4e A:148-220 [232400]
        Other proteins in same PDB: d3h4ea1, d3h4eb1, d3h4ec1, d3h4ed1, d3h4ee1, d3h4ef1, d3h4eg1, d3h4eh1, d3h4ei1, d3h4ej1, d3h4ek1, d3h4el1
        automated match to d1e6jp1
      2. 1992328Domain d3h4eb2: 3h4e B:148-219 [232394]
        Other proteins in same PDB: d3h4ea1, d3h4eb1, d3h4ec1, d3h4ed1, d3h4ee1, d3h4ef1, d3h4eg1, d3h4eh1, d3h4ei1, d3h4ej1, d3h4ek1, d3h4el1
        automated match to d1e6jp1
      3. 1992329Domain d3h4ec2: 3h4e C:148-219 [232403]
        Other proteins in same PDB: d3h4ea1, d3h4eb1, d3h4ec1, d3h4ed1, d3h4ee1, d3h4ef1, d3h4eg1, d3h4eh1, d3h4ei1, d3h4ej1, d3h4ek1, d3h4el1
        automated match to d1e6jp1
      4. 1992330Domain d3h4ed2: 3h4e D:148-219 [232398]
        Other proteins in same PDB: d3h4ea1, d3h4eb1, d3h4ec1, d3h4ed1, d3h4ee1, d3h4ef1, d3h4eg1, d3h4eh1, d3h4ei1, d3h4ej1, d3h4ek1, d3h4el1
        automated match to d1e6jp1
      5. 1992331Domain d3h4ee2: 3h4e E:148-219 [232391]
        Other proteins in same PDB: d3h4ea1, d3h4eb1, d3h4ec1, d3h4ed1, d3h4ee1, d3h4ef1, d3h4eg1, d3h4eh1, d3h4ei1, d3h4ej1, d3h4ek1, d3h4el1
        automated match to d1e6jp1
      6. 1992332Domain d3h4ef2: 3h4e F:148-219 [232402]
        Other proteins in same PDB: d3h4ea1, d3h4eb1, d3h4ec1, d3h4ed1, d3h4ee1, d3h4ef1, d3h4eg1, d3h4eh1, d3h4ei1, d3h4ej1, d3h4ek1, d3h4el1
        automated match to d1e6jp1
      7. 1992333Domain d3h4eg2: 3h4e G:148-220 [232401]
        Other proteins in same PDB: d3h4ea1, d3h4eb1, d3h4ec1, d3h4ed1, d3h4ee1, d3h4ef1, d3h4eg1, d3h4eh1, d3h4ei1, d3h4ej1, d3h4ek1, d3h4el1
        automated match to d1e6jp1
      8. 1992334Domain d3h4eh2: 3h4e H:148-219 [232397]
        Other proteins in same PDB: d3h4ea1, d3h4eb1, d3h4ec1, d3h4ed1, d3h4ee1, d3h4ef1, d3h4eg1, d3h4eh1, d3h4ei1, d3h4ej1, d3h4ek1, d3h4el1
        automated match to d1e6jp1
      9. 1992335Domain d3h4ei2: 3h4e I:148-219 [232396]
        Other proteins in same PDB: d3h4ea1, d3h4eb1, d3h4ec1, d3h4ed1, d3h4ee1, d3h4ef1, d3h4eg1, d3h4eh1, d3h4ei1, d3h4ej1, d3h4ek1, d3h4el1
        automated match to d1e6jp1
      10. 1992336Domain d3h4ej2: 3h4e J:148-219 [232393]
        Other proteins in same PDB: d3h4ea1, d3h4eb1, d3h4ec1, d3h4ed1, d3h4ee1, d3h4ef1, d3h4eg1, d3h4eh1, d3h4ei1, d3h4ej1, d3h4ek1, d3h4el1
        automated match to d1e6jp1
      11. 1992337Domain d3h4ek2: 3h4e K:148-219 [239334]
        Other proteins in same PDB: d3h4ea1, d3h4eb1, d3h4ec1, d3h4ed1, d3h4ee1, d3h4ef1, d3h4eg1, d3h4eh1, d3h4ei1, d3h4ej1, d3h4ek1, d3h4el1
        automated match to d3h47a2
      12. 1992338Domain d3h4el2: 3h4e L:148-219 [239336]
        Other proteins in same PDB: d3h4ea1, d3h4eb1, d3h4ec1, d3h4ed1, d3h4ee1, d3h4ef1, d3h4eg1, d3h4eh1, d3h4ei1, d3h4ej1, d3h4ek1, d3h4el1
        automated match to d3h47a2
    3. Domain for 4qnb:
    4. Domain for 5jpa:
  5. 1992339Human immunodeficiency virus type 1 group m subtype b (isolate ny5) [TaxId:11698] [273803] (5 PDB entries)
    1. Domain for 4xfx:
    2. Domain for 4xfy:
    3. Domain for 4xfz:
    4. Domain for 4xro:
    5. Domain for 4xrq:
  6. 1992345Human immunodeficiency virus type 1 group m subtype b [TaxId:11698] [260980] (3 PDB entries)
    1. Domain for 4u0e:
    2. Domain for 4u0f:
    3. Domains for 4wym:
      1. 1992348Domain d4wyma2: 4wym A:148-220 [262159]
        Other proteins in same PDB: d4wyma1, d4wymb1, d4wymc1, d4wymd1, d4wyme1, d4wymf1, d4wymg1, d4wymh1, d4wymi1, d4wymj1, d4wymk1, d4wyml1
        automated match to d2m8pa2
      2. 1992349Domain d4wymb2: 4wym B:148-220 [262171]
        Other proteins in same PDB: d4wyma1, d4wymb1, d4wymc1, d4wymd1, d4wyme1, d4wymf1, d4wymg1, d4wymh1, d4wymi1, d4wymj1, d4wymk1, d4wyml1
        automated match to d2m8pa2
      3. 1992350Domain d4wymc2: 4wym C:148-219 [262167]
        Other proteins in same PDB: d4wyma1, d4wymb1, d4wymc1, d4wymd1, d4wyme1, d4wymf1, d4wymg1, d4wymh1, d4wymi1, d4wymj1, d4wymk1, d4wyml1
        automated match to d2m8pa2
      4. 1992351Domain d4wymd2: 4wym D:148-219 [262161]
        Other proteins in same PDB: d4wyma1, d4wymb1, d4wymc1, d4wymd1, d4wyme1, d4wymf1, d4wymg1, d4wymh1, d4wymi1, d4wymj1, d4wymk1, d4wyml1
        automated match to d2m8pa2
      5. 1992352Domain d4wyme2: 4wym E:148-220 [262156]
        Other proteins in same PDB: d4wyma1, d4wymb1, d4wymc1, d4wymd1, d4wyme1, d4wymf1, d4wymg1, d4wymh1, d4wymi1, d4wymj1, d4wymk1, d4wyml1
        automated match to d2m8pa2
      6. 1992353Domain d4wymf2: 4wym F:148-220 [262157]
        Other proteins in same PDB: d4wyma1, d4wymb1, d4wymc1, d4wymd1, d4wyme1, d4wymf1, d4wymg1, d4wymh1, d4wymi1, d4wymj1, d4wymk1, d4wyml1
        automated match to d2m8pa2
      7. 1992354Domain d4wymg2: 4wym G:148-219 [262170]
        Other proteins in same PDB: d4wyma1, d4wymb1, d4wymc1, d4wymd1, d4wyme1, d4wymf1, d4wymg1, d4wymh1, d4wymi1, d4wymj1, d4wymk1, d4wyml1
        automated match to d2m8pa2
      8. 1992355Domain d4wymh2: 4wym H:148-219 [262173]
        Other proteins in same PDB: d4wyma1, d4wymb1, d4wymc1, d4wymd1, d4wyme1, d4wymf1, d4wymg1, d4wymh1, d4wymi1, d4wymj1, d4wymk1, d4wyml1
        automated match to d2m8pa2
      9. 1992356Domain d4wymj2: 4wym J:148-219 [262169]
        Other proteins in same PDB: d4wyma1, d4wymb1, d4wymc1, d4wymd1, d4wyme1, d4wymf1, d4wymg1, d4wymh1, d4wymi1, d4wymj1, d4wymk1, d4wyml1
        automated match to d2m8pa2
      10. 1992357Domain d4wymk2: 4wym K:148-219 [262168]
        Other proteins in same PDB: d4wyma1, d4wymb1, d4wymc1, d4wymd1, d4wyme1, d4wymf1, d4wymg1, d4wymh1, d4wymi1, d4wymj1, d4wymk1, d4wyml1
        automated match to d2m8pa2
  7. 1992358Human immunodeficiency virus type 1 [TaxId:11698] [232917] (4 PDB entries)
    1. Domains for 2m8l:
      1. 1992360Domain d2m8la2: 2m8l A:148-221 [243141]
        Other proteins in same PDB: d2m8la1, d2m8lb1
        automated match to d3ntea2
      2. 1992361Domain d2m8lb2: 2m8l B:148-221 [243143]
        Other proteins in same PDB: d2m8la1, d2m8lb1
        automated match to d3ntea2
    2. Domain for 2m8n:
    3. Domain for 2m8p:
    4. Domain for 3mge:
  8. 1992364Mouse (Mus musculus) [TaxId:10090] [195468] (1 PDB entry)
  9. 2273257Feline immunodeficiency virus (isolate petaluma) [TaxId:11674] [316558] (1 PDB entry)
  10. 2280947Human immunodeficiency virus type 1 [TaxId:11676] [324248] (1 PDB entry)

More info for Protein automated matches from a.28.3.0: automated matches

Timeline for Protein automated matches from a.28.3.0: automated matches: