SCOPe 2.08: Domain d5hglc2: 5hgl C:148-219

Lineage for d5hglc2 (5hgl C:148-219)

1. Root: SCOPe 2.08

2. Class a: All alpha proteins [46456] (290 folds)

3. Fold a.28: Acyl carrier protein-like [47335] (3 superfamilies)
   4 helices, bundle; helix 3 is shorter than others; up-and-down

4. Superfamily a.28.3: Retrovirus capsid dimerization domain-like [47353] (3 families)

5. Family a.28.3.0: automated matches [191629] (1 protein)
   not a true family

6. Protein automated matches [191156] (12 species)
   not a true protein

7. Species Human immunodeficiency virus 1 [TaxId:11676] [233043] (33 PDB entries)

8. Domain d5hglc2: 5hgl C:148-219 [321036]
   Other proteins in same PDB: d5hgla1, d5hglb1, d5hglc1, d5hgld1, d5hgle1, d5hglf1
   automated match to d2m8pa2
   complexed with 1b0, cl

Details for d5hglc2

PDB Entry: 5hgl, 3.1 Å

PDB Description: hexameric hiv-1 ca, open conformation

PDB Compounds: (C:) capsid protein p24

SCOPe Domain Sequences for d5hglc2:

Sequence, based on SEQRES records:

>d5hglc2 a.28.3.0 (C:148-219) automated matches {Human immunodeficiency virus 1 [TaxId: 11676]}
tsildirqgpkepfrdyvdrfyktlraeqasqevknaatetllvqnanpdcktilkalgp
gatleemmtacq

Sequence, based on observed residues (ATOM records):

>d5hglc2 a.28.3.0 (C:148-219) automated matches {Human immunodeficiency virus 1 [TaxId: 11676]}
tsildirqgpkepfrdyvdrfyktlraetetllvqnanpdcktilkalgpgatleemmta
cq

Timeline for d5hglc2:

• d5hglc2 first appeared in SCOPe 2.06
  
• d5hglc2 appears in SCOPe 2.07