SCOPe 2.08: Protein: Elongation factor Tu (EF-Tu), N-terminal (G) domain

Lineage for Protein: Elongation factor Tu (EF-Tu), N-terminal (G) domain

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (27 families)
division into families based on beta-sheet topologies
Family c.37.1.8: G proteins [52592] (81 proteins)
core: mixed beta-sheet of 6 strands, order 231456; strand 2 is antiparallel to the rest
Protein Elongation factor Tu (EF-Tu), N-terminal (G) domain [52626] (4 species)

Species:

Cow (Bos taurus), mitochondrial [TaxId:9913] [52630] (2 PDB entries)
Uniprot P49410 56-452
1. Domains for 1d2e:
  1. Domain d1d2ea3: 1d2e A:55-250 [32136]
    Other proteins in same PDB: d1d2ea1, d1d2ea2, d1d2eb1, d1d2eb2, d1d2ec1, d1d2ec2, d1d2ed1, d1d2ed2
    protein/RNA complex; complexed with gdp, mg
  2. Domain d1d2eb3: 1d2e B:55-250 [32137]
    Other proteins in same PDB: d1d2ea1, d1d2ea2, d1d2eb1, d1d2eb2, d1d2ec1, d1d2ec2, d1d2ed1, d1d2ed2
    protein/RNA complex; complexed with gdp, mg
  3. Domain d1d2ec3: 1d2e C:55-250 [32138]
    Other proteins in same PDB: d1d2ea1, d1d2ea2, d1d2eb1, d1d2eb2, d1d2ec1, d1d2ec2, d1d2ed1, d1d2ed2
    protein/RNA complex; complexed with gdp, mg
  4. Domain d1d2ed3: 1d2e D:55-250 [32139]
    Other proteins in same PDB: d1d2ea1, d1d2ea2, d1d2eb1, d1d2eb2, d1d2ec1, d1d2ec2, d1d2ed1, d1d2ed2
    protein/RNA complex; complexed with gdp, mg
2. Domain for 1xb2:
  - Domain d1xb2a3: 1xb2 A:56-250 [115056]
    Other proteins in same PDB: d1xb2a1, d1xb2a2, d1xb2b1, d1xb2b2, d1xb2b3

Escherichia coli [TaxId:562] [52627] (11 PDB entries)
Uniprot P02990

Domains for 1d8t:
1. Domain d1d8ta3: 1d8t A:3-204 [32119]
  Other proteins in same PDB: d1d8ta1, d1d8ta2, d1d8tb1, d1d8tb2
  complexed with act, gdp, mg
2. Domain d1d8tb3: 1d8t B:9-204 [32120]
  Other proteins in same PDB: d1d8ta1, d1d8ta2, d1d8tb1, d1d8tb2
  complexed with act, gdp, mg
Domains for 1dg1:
1. Domain d1dg1g3: 1dg1 G:9-204 [32117]
  Other proteins in same PDB: d1dg1g1, d1dg1g2, d1dg1h1, d1dg1h2
  complexed with gdp, mg
2. Domain d1dg1h3: 1dg1 H:9-204 [32118]
  Other proteins in same PDB: d1dg1g1, d1dg1g2, d1dg1h1, d1dg1h2
  complexed with gdp, mg
Domains for 1efc:
1. Domain d1efca3: 1efc A:8-204 [32113]
  Other proteins in same PDB: d1efca1, d1efca2, d1efcb1, d1efcb2
  complexed with gdp, mg
2. Domain d1efcb3: 1efc B:8-204 [32114]
  Other proteins in same PDB: d1efca1, d1efca2, d1efcb1, d1efcb2
  complexed with gdp, mg
Domain for 1efm:
- Domain d1efma1: 1efm A:12-190 [64732]
  one domain only
  complexed with gdp, mg
Domains for 1efu:
1. Domain d1efua3: 1efu A:9-204 [32115]
  Other proteins in same PDB: d1efua1, d1efua2, d1efub2, d1efub3, d1efub4, d1efuc1, d1efuc2, d1efud2, d1efud3, d1efud4
2. Domain d1efuc3: 1efu C:9-204 [32116]
  Other proteins in same PDB: d1efua1, d1efua2, d1efub2, d1efub3, d1efub4, d1efuc1, d1efuc2, d1efud2, d1efud3, d1efud4
Domain for 1etu:
- Domain d1etua1: 1etu A:5-200 [64737]
  one domain only
  complexed with gdp, mg
Domain for 1ob2:
- Domain d1ob2a3: 1ob2 A:1-204 [103902]
  Other proteins in same PDB: d1ob2a1, d1ob2a2
  protein/RNA complex; complexed with gnp, kir, mg
Domains for 2bvn:
1. Domain d2bvna3: 2bvn A:9-204 [129284]
  Other proteins in same PDB: d2bvna1, d2bvna2, d2bvnb1, d2bvnb2
  automated match to d1efca3
  complexed with enx, gnp, mg
2. Domain d2bvnb3: 2bvn B:6-204 [129287]
  Other proteins in same PDB: d2bvna1, d2bvna2, d2bvnb1, d2bvnb2
  automated match to d1efca3
  complexed with enx, gnp, mg
Domain for 2fx3:
- Domain d2fx3a3: 2fx3 A:9-204 [134273]
  Other proteins in same PDB: d2fx3a1, d2fx3a2
  automatically matched to d1ob2a3
  complexed with gdp, mg

Domains for 4q7j:

Domain d4q7jb1: 4q7j B:8-204 [259275]
Other proteins in same PDB: d4q7ja1, d4q7ja2, d4q7ja3, d4q7jb2, d4q7jb3, d4q7je1, d4q7je2, d4q7je3, d4q7jf2, d4q7jf3
automated match to d1d8ta3
protein/RNA complex; complexed with so4

Domain d4q7jf1: 4q7j F:7-204 [259278]
Other proteins in same PDB: d4q7ja1, d4q7ja2, d4q7ja3, d4q7jb2, d4q7jb3, d4q7je1, d4q7je2, d4q7je3, d4q7jf2, d4q7jf3
automated match to d1d8ta3
protein/RNA complex; complexed with so4

Domains for 6eze:
1. Domain d6ezea1: 6eze A:8-204 [356621]
  Other proteins in same PDB: d6ezea2, d6ezea3, d6ezeb2, d6ezeb3
  automated match to d1dg1g3
  complexed with gnp, gol, mg, peg, so4
2. Domain d6ezeb1: 6eze B:8-204 [356604]
  Other proteins in same PDB: d6ezea2, d6ezea3, d6ezeb2, d6ezeb3
  automated match to d1dg1g3
  complexed with gnp, gol, mg, peg, so4

Thermus aquaticus [TaxId:271] [52628] (4 PDB entries)
1. Domain for 1b23:
  - Domain d1b23p3: 1b23 P:1-212 [32124]
    Other proteins in same PDB: d1b23p1, d1b23p2
    protein/RNA complex; complexed with cys, gnp, mg, so4
2. Domain for 1eft:
  - Domain d1efta3: 1eft A:1-212 [32123]
    Other proteins in same PDB: d1efta1, d1efta2
    complexed with gnp, mg
3. Domains for 1ttt:
  1. Domain d1ttta3: 1ttt A:1-212 [32125]
    Other proteins in same PDB: d1ttta1, d1ttta2, d1tttb1, d1tttb2, d1tttc1, d1tttc2
    protein/RNA complex; complexed with gnp, mg, phe
  2. Domain d1tttb3: 1ttt B:1-212 [32126]
    Other proteins in same PDB: d1ttta1, d1ttta2, d1tttb1, d1tttb2, d1tttc1, d1tttc2
    protein/RNA complex; complexed with gnp, mg, phe
  3. Domain d1tttc3: 1ttt C:1-212 [32127]
    Other proteins in same PDB: d1ttta1, d1ttta2, d1tttb1, d1tttb2, d1tttc1, d1tttc2
    protein/RNA complex; complexed with gnp, mg, phe
4. Domains for 1tui:
  1. Domain d1tuia3: 1tui A:9-212 [32128]
    Other proteins in same PDB: d1tuia1, d1tuia2, d1tuib1, d1tuib2, d1tuic1, d1tuic2
    complexed with gdp, mg
  2. Domain d1tuib3: 1tui B:9-212 [32129]
    Other proteins in same PDB: d1tuia1, d1tuia2, d1tuib1, d1tuib2, d1tuic1, d1tuic2
    complexed with gdp, mg
  3. Domain d1tuic3: 1tui C:9-212 [32130]
    Other proteins in same PDB: d1tuia1, d1tuia2, d1tuib1, d1tuib2, d1tuic1, d1tuic2
    complexed with gdp, mg

Thermus thermophilus [TaxId:274] [52629] (4 PDB entries)

Domains for 1aip:

Domain d1aipa3: 1aip A:9-212 [32132]
Other proteins in same PDB: d1aipa1, d1aipa2, d1aipb1, d1aipb2, d1aipc1, d1aipc2, d1aipd1, d1aipd2, d1aipe1, d1aipe2, d1aipf1, d1aipf2, d1aipg1, d1aipg2, d1aiph1, d1aiph2

Domain d1aipb3: 1aip B:9-212 [32133]
Other proteins in same PDB: d1aipa1, d1aipa2, d1aipb1, d1aipb2, d1aipc1, d1aipc2, d1aipd1, d1aipd2, d1aipe1, d1aipe2, d1aipf1, d1aipf2, d1aipg1, d1aipg2, d1aiph1, d1aiph2

Domain d1aipe3: 1aip E:9-212 [32134]
Other proteins in same PDB: d1aipa1, d1aipa2, d1aipb1, d1aipb2, d1aipc1, d1aipc2, d1aipd1, d1aipd2, d1aipe1, d1aipe2, d1aipf1, d1aipf2, d1aipg1, d1aipg2, d1aiph1, d1aiph2

Domain d1aipf3: 1aip F:9-212 [32135]
Other proteins in same PDB: d1aipa1, d1aipa2, d1aipb1, d1aipb2, d1aipc1, d1aipc2, d1aipd1, d1aipd2, d1aipe1, d1aipe2, d1aipf1, d1aipf2, d1aipg1, d1aipg2, d1aiph1, d1aiph2

Domain for 1exm:
- Domain d1exma3: 1exm A:3-212 [32131]
  Other proteins in same PDB: d1exma1, d1exma2
  protein/RNA complex; complexed with gnp, mg
Domains for 1ha3:
1. Domain d1ha3a3: 1ha3 A:3-212 [60871]
  Other proteins in same PDB: d1ha3a1, d1ha3a2, d1ha3b1, d1ha3b2
  complexed with bme, gdp, mau, mg
2. Domain d1ha3b3: 1ha3 B:3-212 [60874]
  Other proteins in same PDB: d1ha3a1, d1ha3a2, d1ha3b1, d1ha3b2
  complexed with bme, gdp, mau, mg
Domain for 1zc8:
- Domain d1zc8y3: 1zc8 Y:9-212 [124895]
  Other proteins in same PDB: d1zc8k1, d1zc8y1, d1zc8y2
  automatically matched to d1aipa3
  protein/RNA complex

More info for Protein Elongation factor Tu (EF-Tu), N-terminal (G) domain from c.37.1.8: G proteins

Timeline for Protein Elongation factor Tu (EF-Tu), N-terminal (G) domain from c.37.1.8: G proteins:

Protein Elongation factor Tu (EF-Tu), N-terminal (G) domain from c.37.1.8: G proteins first appeared (with stable ids) in SCOP 1.55
Protein Elongation factor Tu (EF-Tu), N-terminal (G) domain from c.37.1.8: G proteins appears in SCOPe 2.07