SCOPe 2.08: Protein: Diphtheria toxin repressor (DtxR)

Lineage for Protein: Diphtheria toxin repressor (DtxR)

Root: SCOPe 2.08
Class a: All alpha proteins [46456] (290 folds)
Fold a.4: DNA/RNA-binding 3-helical bundle [46688] (14 superfamilies)
core: 3-helices; bundle, closed or partly opened, right-handed twist; up-and down
Superfamily a.4.5: 'Winged helix' DNA-binding domain [46785] (86 families)
contains a small beta-sheet (wing)
Family a.4.5.24: Iron-dependent repressor protein [46882] (4 proteins)
automatically mapped to Pfam PF01325
Protein Diphtheria toxin repressor (DtxR) [46883] (1 species)

Species:

Corynebacterium diphtheriae [TaxId:1717] [46884] (20 PDB entries)
Uniprot P33120
1. Domain for 1bi0:
  - Domain d1bi0a1: 1bi0 A:4-64 [16202]
    Other proteins in same PDB: d1bi0a2, d1bi0a3
    complexed with so4, zn
2. Domain for 1bi1:
  - Domain d1bi1a1: 1bi1 A:4-64 [16196]
    Other proteins in same PDB: d1bi1a2, d1bi1a3
3. Domains for 1bi2:
  1. Domain d1bi2a1: 1bi2 A:3-64 [16197]
    Other proteins in same PDB: d1bi2a2, d1bi2a3, d1bi2b2
  2. Domain d1bi2b1: 1bi2 B:3-64 [16198]
    Other proteins in same PDB: d1bi2a2, d1bi2a3, d1bi2b2
4. Domains for 1bi3:
  1. Domain d1bi3a1: 1bi3 A:4-64 [16199]
    Other proteins in same PDB: d1bi3a2, d1bi3a3, d1bi3b2
    complexed with so4, zn
  2. Domain d1bi3b1: 1bi3 B:4-64 [16200]
    Other proteins in same PDB: d1bi3a2, d1bi3a3, d1bi3b2
    complexed with so4, zn
5. Domains for 1c0w:
  1. Domain d1c0wa1: 1c0w A:2-64 [16211]
    Other proteins in same PDB: d1c0wa2, d1c0wa3, d1c0wb2, d1c0wb3, d1c0wc2, d1c0wc3, d1c0wd2, d1c0wd3
    protein/DNA complex; complexed with co
  2. Domain d1c0wb1: 1c0w B:2-64 [16212]
    Other proteins in same PDB: d1c0wa2, d1c0wa3, d1c0wb2, d1c0wb3, d1c0wc2, d1c0wc3, d1c0wd2, d1c0wd3
    protein/DNA complex; complexed with co
  3. Domain d1c0wc1: 1c0w C:2-64 [16213]
    Other proteins in same PDB: d1c0wa2, d1c0wa3, d1c0wb2, d1c0wb3, d1c0wc2, d1c0wc3, d1c0wd2, d1c0wd3
    protein/DNA complex; complexed with co
  4. Domain d1c0wd1: 1c0w D:2-64 [16214]
    Other proteins in same PDB: d1c0wa2, d1c0wa3, d1c0wb2, d1c0wb3, d1c0wc2, d1c0wc3, d1c0wd2, d1c0wd3
    protein/DNA complex; complexed with co
6. Domains for 1ddn:
  1. Domain d1ddna1: 1ddn A:3-64 [16207]
    Other proteins in same PDB: d1ddna2, d1ddnb2, d1ddnc2, d1ddnd2
    protein/DNA complex; complexed with ni; mutant
  2. Domain d1ddnb1: 1ddn B:3-64 [16208]
    Other proteins in same PDB: d1ddna2, d1ddnb2, d1ddnc2, d1ddnd2
    protein/DNA complex; complexed with ni; mutant
  3. Domain d1ddnc1: 1ddn C:3-64 [16209]
    Other proteins in same PDB: d1ddna2, d1ddnb2, d1ddnc2, d1ddnd2
    protein/DNA complex; complexed with ni; mutant
  4. Domain d1ddnd1: 1ddn D:3-64 [16210]
    Other proteins in same PDB: d1ddna2, d1ddnb2, d1ddnc2, d1ddnd2
    protein/DNA complex; complexed with ni; mutant
7. Domains for 1dpr:
  1. Domain d1dpra1: 1dpr A:3-64 [16194]
    Other proteins in same PDB: d1dpra2, d1dprb2
  2. Domain d1dprb1: 1dpr B:3-64 [16195]
    Other proteins in same PDB: d1dpra2, d1dprb2
8. Domains for 1f5t:
  1. Domain d1f5ta1: 1f5t A:1002-1064 [16203]
    Other proteins in same PDB: d1f5ta2, d1f5tb2, d1f5tc2, d1f5td2
    protein/DNA complex; complexed with ni; mutant
  2. Domain d1f5tb1: 1f5t B:2002-2064 [16204]
    Other proteins in same PDB: d1f5ta2, d1f5tb2, d1f5tc2, d1f5td2
    protein/DNA complex; complexed with ni; mutant
  3. Domain d1f5tc1: 1f5t C:3002-3064 [16205]
    Other proteins in same PDB: d1f5ta2, d1f5tb2, d1f5tc2, d1f5td2
    protein/DNA complex; complexed with ni; mutant
  4. Domain d1f5td1: 1f5t D:4002-4064 [16206]
    Other proteins in same PDB: d1f5ta2, d1f5tb2, d1f5tc2, d1f5td2
    protein/DNA complex; complexed with ni; mutant
9. Domain for 1fwz:
  - Domain d1fwza1: 1fwz A:4-64 [60077]
    Other proteins in same PDB: d1fwza2, d1fwza3
    complexed with so4, zn
10. Domain for 1g3s:
  - Domain d1g3sa1: 1g3s A:4-64 [65124]
    Other proteins in same PDB: d1g3sa2, d1g3sa3
11. Domains for 1g3t:
  1. Domain d1g3ta1: 1g3t A:3-64 [65127]
    Other proteins in same PDB: d1g3ta2, d1g3ta3, d1g3tb2
  2. Domain d1g3tb1: 1g3t B:1003-1064 [65130]
    Other proteins in same PDB: d1g3ta2, d1g3ta3, d1g3tb2
12. Domain for 1g3w:
  - Domain d1g3wa1: 1g3w A:4-64 [65133]
    Other proteins in same PDB: d1g3wa2, d1g3wa3
    complexed with cd, so4
13. Domain for 1g3y:
  - Domain d1g3ya1: 1g3y A:3-64 [65136]
    Other proteins in same PDB: d1g3ya2, d1g3ya3
    complexed with zn
14. Domain for 1p92:
  - Domain d1p92a1: 1p92 A:1-64 [104085]
    Other proteins in same PDB: d1p92a2, d1p92a3
    complexed with bme
15. Domain for 1xcv:
  - Domain d1xcva1: 1xcv A:1-64 [121862]
    Other proteins in same PDB: d1xcva2
    automated match to d1p92a1
    protein/DNA complex; complexed with ni; mutant
16. Domain for 2dtr:
  - Domain d2dtra1: 2dtr A:4-64 [16193]
    Other proteins in same PDB: d2dtra2, d2dtra3
    complexed with co, so4
17. Domain for 2qq9:
  - Domain d2qq9a1: 2qq9 A:3-64 [243621]
    Other proteins in same PDB: d2qq9a2, d2qq9a3
    automated match to d2dtra1
    protein/DNA complex; complexed with ni, po4
18. Domain for 2qqa:
  - Domain d2qqaa1: 2qqa A:3-64 [243624]
    Other proteins in same PDB: d2qqaa2, d2qqaa3
    automated match to d2dtra1
    protein/DNA complex; complexed with ni, po4
19. Domain for 2qqb:
  - Domain d2qqba1: 2qqb A:3-64 [243627]
    Other proteins in same PDB: d2qqba2, d2qqba3
    automated match to d2dtra1
    protein/DNA complex; complexed with ni, po4
20. Domain for 2tdx:
  - Domain d2tdxa1: 2tdx A:1-64 [16201]
    Other proteins in same PDB: d2tdxa2
    protein/DNA complex; complexed with ni; mutant

More info for Protein Diphtheria toxin repressor (DtxR) from a.4.5.24: Iron-dependent repressor protein

Timeline for Protein Diphtheria toxin repressor (DtxR) from a.4.5.24: Iron-dependent repressor protein:

Protein Diphtheria toxin repressor (DtxR) from a.4.5.24: Iron-dependent repressor protein first appeared (with stable ids) in SCOP 1.55, called Protein Diphtheria toxin repressor (DtxR) from a.4.5.24: Iron-dependent represor protein
Protein Diphtheria toxin repressor (DtxR) from a.4.5.24: Iron-dependent repressor protein appears in SCOPe 2.07