SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2042196Fold b.29: Concanavalin A-like lectins/glucanases [49898] (1 superfamily)
    sandwich; 12-14 strands in 2 sheets; complex topology
  4. 2042197Superfamily b.29.1: Concanavalin A-like lectins/glucanases [49899] (26 families) (S)
  5. 2043012Family b.29.1.3: Galectin (animal S-lectin) [49932] (9 protein domains)
  6. 2043184Protein automated matches [190029] (5 species)
    not a true protein

Species:

  1. 2043185Chicken (Gallus gallus) [TaxId:9031] [188930] (1 PDB entry)
  2. 2043188Conger eel (Conger myriaster) [TaxId:7943] [188077] (3 PDB entries)
    1. Domain for 1wlc:
    2. Domain for 1wld:
    3. Domain for 1wlw:
  3. 2043192Human (Homo sapiens) [TaxId:9606] [186749] (9 PDB entries)
    1. Domain for 1kjl:
    2. Domain for 1kjr:
    3. Domains for 3zxf:
      1. 2043193Domain d3zxfa_: 3zxf A: [186652]
        Other proteins in same PDB: d3zxfb2
        automated match to d1bkza_
        complexed with act
      2. 2043194Domain d3zxfb1: 3zxf B:0-135 [186653]
        Other proteins in same PDB: d3zxfb2
        automated match to d1bkza_
        complexed with act
    4. Domains for 4uw3:
      1. 2043197Domain d4uw3a_: 4uw3 A: [267504]
        automated match to d3zxfb_
        complexed with 50g
      2. 2043198Domain d4uw3b_: 4uw3 B: [267505]
        automated match to d3zxfb_
        complexed with 50g
    5. Domains for 4uw4:
      1. 2043201Domain d4uw4a_: 4uw4 A: [267506]
        automated match to d3zxfb_
        complexed with 4s0
      2. 2043202Domain d4uw4b_: 4uw4 B: [267507]
        automated match to d3zxfb_
        complexed with 4s0
    6. Domains for 4uw5:
      1. 2043203Domain d4uw5a_: 4uw5 A: [267508]
        automated match to d3zxfb_
        complexed with 4s0
      2. 2043204Domain d4uw5b_: 4uw5 B: [267509]
        automated match to d3zxfb_
        complexed with 4s0
      3. 2043205Domain d4uw5c_: 4uw5 C: [267510]
        automated match to d3zxfb_
        complexed with 4s0
      4. 2043206Domain d4uw5d_: 4uw5 D: [267511]
        automated match to d3zxfb_
        complexed with 4s0
      5. 2043207Domain d4uw5e_: 4uw5 E: [267512]
        automated match to d3zxfb_
        complexed with 4s0
      6. 2043208Domain d4uw5f_: 4uw5 F: [267513]
        automated match to d3zxfb_
        complexed with 4s0
    7. Domains for 4uw6:
      1. 2043199Domain d4uw6a_: 4uw6 A: [260989]
        automated match to d3zxfb_
        complexed with vv7
      2. 2043200Domain d4uw6b_: 4uw6 B: [260988]
        automated match to d3zxfb_
        complexed with vv7
    8. Domains for 4xbq:
      1. 2043209Domain d4xbqa_: 4xbq A: [273027]
        automated match to d3zxfb_
        complexed with gal, nag
      2. 2043210Domain d4xbqb_: 4xbq B: [273028]
        automated match to d3zxfb_
        complexed with gal, nag
    9. Domains for 5dg2:
      1. 2279181Domain d5dg2a_: 5dg2 A: [322482]
        automated match to d1hlca_
        complexed with gal, glc
      2. 2279205Domain d5dg2b_: 5dg2 B: [322506]
        automated match to d1hlca_
        complexed with gal, glc
  4. 2043211Inky cap fungus (Coprinopsis cinerea) [TaxId:5346] [189197] (1 PDB entry)
  5. 2043216Mouse (Mus musculus) [TaxId:10090] [257827] (1 PDB entry)

More info for Protein automated matches from b.29.1.3: Galectin (animal S-lectin)

Timeline for Protein automated matches from b.29.1.3: Galectin (animal S-lectin):