Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. Class b: All beta proteins [48724] (180 folds)
  3. Fold b.29: Concanavalin A-like lectins/glucanases [49898] (1 superfamily)
    sandwich; 12-14 strands in 2 sheets; complex topology
  4. Superfamily b.29.1: Concanavalin A-like lectins/glucanases [49899] (27 families) (S)
  5. Family b.29.1.3: Galectin (animal S-lectin) [49932] (9 proteins)
  6. Protein automated matches [190029] (5 species)
    not a true protein

Species:

  1. Chicken (Gallus gallus) [TaxId:9031] [188930] (1 PDB entry)
  2. Conger eel (Conger myriaster) [TaxId:7943] [188077] (3 PDB entries)
    1. Domain for 1wlc:
    2. Domain for 1wld:
    3. Domain for 1wlw:
  3. Human (Homo sapiens) [TaxId:9606] [186749] (38 PDB entries)
    1. Domain for 1kjl:
    2. Domain for 1kjr:
    3. Domains for 3zxf:
      1. Domain d3zxfa_: 3zxf A: [186652]
        Other proteins in same PDB: d3zxfb2
        automated match to d1bkza_
        complexed with act
      2. Domain d3zxfb1: 3zxf B:0-135 [186653]
        Other proteins in same PDB: d3zxfb2
        automated match to d1bkza_
        complexed with act
    4. Domains for 4uw3:
      1. Domain d4uw3a_: 4uw3 A: [267504]
        automated match to d3zxfb_
        complexed with 50g
      2. Domain d4uw3b_: 4uw3 B: [267505]
        automated match to d3zxfb_
        complexed with 50g
    5. Domains for 4uw4:
      1. Domain d4uw4a_: 4uw4 A: [267506]
        automated match to d3zxfb_
        complexed with 4s0
      2. Domain d4uw4b_: 4uw4 B: [267507]
        automated match to d3zxfb_
        complexed with 4s0
    6. Domains for 4uw5:
      1. Domain d4uw5a_: 4uw5 A: [267508]
        automated match to d3zxfb_
        complexed with 4s0
      2. Domain d4uw5b_: 4uw5 B: [267509]
        automated match to d3zxfb_
        complexed with 4s0
      3. Domain d4uw5c_: 4uw5 C: [267510]
        automated match to d3zxfb_
        complexed with 4s0
      4. Domain d4uw5d_: 4uw5 D: [267511]
        automated match to d3zxfb_
        complexed with 4s0
      5. Domain d4uw5e_: 4uw5 E: [267512]
        automated match to d3zxfb_
        complexed with 4s0
      6. Domain d4uw5f_: 4uw5 F: [267513]
        automated match to d3zxfb_
        complexed with 4s0
    7. Domains for 4uw6:
      1. Domain d4uw6a_: 4uw6 A: [260989]
        automated match to d3zxfb_
        complexed with vv7
      2. Domain d4uw6b_: 4uw6 B: [260988]
        automated match to d3zxfb_
        complexed with vv7
    8. Domains for 4xbq:
      1. Domain d4xbqa_: 4xbq A: [273027]
        automated match to d3zxfb_
      2. Domain d4xbqb_: 4xbq B: [273028]
        automated match to d3zxfb_
    9. Domains for 5dg2:
      1. Domain d5dg2a_: 5dg2 A: [322482]
        automated match to d1hlca_
      2. Domain d5dg2b_: 5dg2 B: [322506]
        automated match to d1hlca_
    10. Domain for 5xrg:
    11. Domain for 5xrh:
    12. Domain for 5xri:
    13. Domain for 5xrj:
    14. Domain for 5xrk:
    15. Domain for 5xrl:
    16. Domain for 5xrm:
    17. Domain for 5xrn:
    18. Domain for 5xro:
    19. Domain for 5xrp:
    20. Domain for 5yt4:
    21. Domain for 6a1s:
    22. Domain for 6a1t:
    23. Domain for 6a1u:
    24. Domain for 6a1v:
    25. Domain for 6a1x:
    26. Domain for 6a1y:
    27. Domain for 6gks:
    28. Domains for 6gkt:
      1. Domain d6gkta_: 6gkt A: [369862]
        automated match to d1g86a_
        complexed with p6g, pg4, pge
      2. Domain d6gktb_: 6gkt B: [369901]
        automated match to d1g86a_
        complexed with p6g, pg4, pge
      3. Domain d6gktc_: 6gkt C: [369861]
        automated match to d1g86a_
        complexed with p6g, pg4, pge
      4. Domain d6gktd_: 6gkt D: [369868]
        automated match to d1g86a_
        complexed with p6g, pg4, pge
      5. Domain d6gkte_: 6gkt E: [369873]
        automated match to d1g86a_
        complexed with p6g, pg4, pge
      6. Domain d6gktf_: 6gkt F: [370095]
        automated match to d1g86a_
        complexed with p6g, pg4, pge
    29. Domain for 6gku:
    30. Domains for 6glw:
      1. Domain d6glwa_: 6glw A: [369872]
        Other proteins in same PDB: d6glwc_, d6glwd1, d6glwd2, d6glwh_, d6glwl1, d6glwl2
        automated match to d1g86a_
        complexed with act, pg4
      2. Domain d6glwb_: 6glw B: [369884]
        Other proteins in same PDB: d6glwc_, d6glwd1, d6glwd2, d6glwh_, d6glwl1, d6glwl2
        automated match to d1g86a_
        complexed with act, pg4
    31. Domain for 6l64:
    32. Domain for 6l67:
    33. Domain for 6l68:
    34. Domain for 6l6a:
    35. Domain for 6l6b:
    36. Domain for 6l6c:
    37. Domain for 6l6d:
    38. Domain for 6qrn:
  4. Inky cap fungus (Coprinopsis cinerea) [TaxId:5346] [189197] (1 PDB entry)
  5. Mouse (Mus musculus) [TaxId:10090] [257827] (2 PDB entries)
    1. Domains for 4lbq:
      1. Domain d4lbqa_: 4lbq A: [257828]
        automated match to d4ga9a_
        complexed with gol
      2. Domain d4lbqb_: 4lbq B: [262918]
        automated match to d4ga9a_
        complexed with gol
      3. Domain d4lbqc_: 4lbq C: [262919]
        automated match to d4ga9a_
        complexed with gol
      4. Domain d4lbqd_: 4lbq D: [262920]
        automated match to d4ga9a_
        complexed with gol
    2. Domains for 7df6:
      1. Domain d7df6a_: 7df6 A: [405100]
        automated match to d4lbma_
        complexed with h5o
      2. Domain d7df6b_: 7df6 B: [405044]
        automated match to d4lbma_
        complexed with h5o

More info for Protein automated matches from b.29.1.3: Galectin (animal S-lectin)

Timeline for Protein automated matches from b.29.1.3: Galectin (animal S-lectin):