SCOPe 2.08: Protein: Cytochrome f, large domain

Lineage for Protein: Cytochrome f, large domain

Root: SCOPe 2.08
Class b: All beta proteins [48724] (180 folds)
Fold b.2: Common fold of diphtheria toxin/transcription factors/cytochrome f [49379] (9 superfamilies)
sandwich; 9 strands in 2 sheet; greek-key; subclass of immunoglobin-like fold
Superfamily b.2.6: Cytochrome f, large domain [49441] (1 family)
Family b.2.6.1: Cytochrome f, large domain [49442] (1 protein)
Protein Cytochrome f, large domain [49443] (5 species)
this domain is interrupted by a small domain which is barrel-sandwich hybrid fold

Species:

Green alga (Chlamydomonas reinhardtii) [TaxId:3055] [49445] (6 PDB entries)

Domains for 1cfm:
1. Domain d1cfma1: 1cfm A:1-168,A:233-251 [22471]
  Other proteins in same PDB: d1cfma2, d1cfmb2, d1cfmc2
  complexed with hem
2. Domain d1cfmb1: 1cfm B:1-168,B:233-251 [22472]
  Other proteins in same PDB: d1cfma2, d1cfmb2, d1cfmc2
  complexed with hem
3. Domain d1cfmc1: 1cfm C:1-168,C:233-251 [22473]
  Other proteins in same PDB: d1cfma2, d1cfmb2, d1cfmc2
  complexed with hem
Domains for 1e2v:
1. Domain d1e2va1: 1e2v A:1-168,A:233-251 [22468]
  Other proteins in same PDB: d1e2va2, d1e2vb2, d1e2vc2
  complexed with act, hec; mutant
2. Domain d1e2vb1: 1e2v B:301-468,B:533-551 [22469]
  Other proteins in same PDB: d1e2va2, d1e2vb2, d1e2vc2
  complexed with act, hec; mutant
3. Domain d1e2vc1: 1e2v C:601-768,C:833-851 [22470]
  Other proteins in same PDB: d1e2va2, d1e2vb2, d1e2vc2
  complexed with act, hec; mutant
Domains for 1e2w:
1. Domain d1e2wa1: 1e2w A:1-168,A:233-251 [22466]
  Other proteins in same PDB: d1e2wa2, d1e2wb2
  complexed with hec; mutant
2. Domain d1e2wb1: 1e2w B:1-168,B:233-251 [22467]
  Other proteins in same PDB: d1e2wa2, d1e2wb2
  complexed with hec; mutant
Domains for 1e2z:
1. Domain d1e2za1: 1e2z A:1-168,A:233-251 [22477]
  Other proteins in same PDB: d1e2za2, d1e2zb2, d1e2zc2
  complexed with hec; mutant
2. Domain d1e2zb1: 1e2z B:1-168,B:233-251 [22478]
  Other proteins in same PDB: d1e2za2, d1e2zb2, d1e2zc2
  complexed with hec; mutant
3. Domain d1e2zc1: 1e2z C:1-168,C:233-251 [22479]
  Other proteins in same PDB: d1e2za2, d1e2zb2, d1e2zc2
  complexed with hec; mutant
Domains for 1ewh:
1. Domain d1ewha1: 1ewh A:1-168,A:233-251 [22474]
  Other proteins in same PDB: d1ewha2, d1ewhb2, d1ewhc2
  complexed with act, hec
2. Domain d1ewhb1: 1ewh B:1-168,B:233-251 [22475]
  Other proteins in same PDB: d1ewha2, d1ewhb2, d1ewhc2
  complexed with act, hec
3. Domain d1ewhc1: 1ewh C:1-168,C:233-251 [22476]
  Other proteins in same PDB: d1ewha2, d1ewhb2, d1ewhc2
  complexed with act, hec

Domain for 1q90:

2768486

Domain d1q90a1: 1q90 A:1-168,A:233-247 [96238]
Other proteins in same PDB: d1q90a2, d1q90a3, d1q90a4, d1q90b_, d1q90c_, d1q90d_, d1q90g_, d1q90l_, d1q90m_, d1q90n_, d1q90r_
complexed with bcr, cla, fes, hec, lfa, lmg, sqd, tds

Mastigocladus laminosus [TaxId:83541] [101556] (2 PDB entries)

Domains for 1vf5:

Domain d1vf5c1: 1vf5 C:1-169,C:232-249 [100580]
Other proteins in same PDB: d1vf5a_, d1vf5b_, d1vf5c2, d1vf5c3, d1vf5d1, d1vf5d2, d1vf5e_, d1vf5f_, d1vf5g_, d1vf5h_, d1vf5n_, d1vf5o_, d1vf5p2, d1vf5p3, d1vf5q1, d1vf5q2, d1vf5r_, d1vf5s_, d1vf5t_, d1vf5u_
complexed with bcr, cla, fes, hem, opc, pl9, tds

Domain d1vf5p1: 1vf5 P:1-169,P:232-249 [100591]
Other proteins in same PDB: d1vf5a_, d1vf5b_, d1vf5c2, d1vf5c3, d1vf5d1, d1vf5d2, d1vf5e_, d1vf5f_, d1vf5g_, d1vf5h_, d1vf5n_, d1vf5o_, d1vf5p2, d1vf5p3, d1vf5q1, d1vf5q2, d1vf5r_, d1vf5s_, d1vf5t_, d1vf5u_
complexed with bcr, cla, fes, hem, opc, pl9, tds

Domain for 4i7z:

Domain d4i7zc1: 4i7z C:1-169,C:232-249 [202583]
Other proteins in same PDB: d4i7za_, d4i7zb_, d4i7zc2, d4i7zc3, d4i7ze_, d4i7zf_, d4i7zg_, d4i7zh_
automated match to d1vf5c1
complexed with 1e2, 8k6, bcr, cd, cla, hem, mys, oct, oz2, umq

Nostoc sp. PCC 7120 [TaxId:103690] [158930] (1 PDB entry)
Uniprot Q93SW9 45-213,280-298
- Domain for 1tu2:
  - Domain d1tu2b1: 1tu2 B:1-169,B:236-254 [144380]
    Other proteins in same PDB: d1tu2a1, d1tu2b2
    complexed with cu, hec
Phormidium laminosum [TaxId:32059] [49446] (1 PDB entry)
- Domain for 1ci3:
  - Domain d1ci3m1: 1ci3 M:1-169,M:232-249 [22480]
    Other proteins in same PDB: d1ci3m2
    complexed with hec, zn
Turnip (Brassica rapa) [TaxId:3711] [49444] (2 PDB entries)
1. Domain for 1ctm:
  - Domain d1ctma1: 1ctm A:1-167,A:231-250 [22465]
    Other proteins in same PDB: d1ctma2
    complexed with hec
2. Domain for 1hcz:
  - Domain d1hcza1: 1hcz A:1-167,A:231-250 [22464]
    Other proteins in same PDB: d1hcza2
    complexed with hem

More info for Protein Cytochrome f, large domain from b.2.6.1: Cytochrome f, large domain

Timeline for Protein Cytochrome f, large domain from b.2.6.1: Cytochrome f, large domain:

Protein Cytochrome f, large domain from b.2.6.1: Cytochrome f, large domain first appeared (with stable ids) in SCOP 1.55
Protein Cytochrome f, large domain from b.2.6.1: Cytochrome f, large domain appears in SCOPe 2.07