Lineage for Protein: Exonuclease domain of prokaryotic DNA polymerase

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2122050Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. 2123751Superfamily c.55.3: Ribonuclease H-like [53098] (15 families) (S)
    consists of one domain of this fold
  5. 2124334Family c.55.3.5: DnaQ-like 3'-5' exonuclease [53118] (17 protein domains)
    contains Pfam PF00929
  6. 2124525Protein Exonuclease domain of prokaryotic DNA polymerase [53119] (3 species)
    part of Klenow fragment, KF

Species:

  1. 2124526Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId:1422] [53122] (43 PDB entries)
    Uniprot Q45458 298-876 # 88% sequence identity ! Uniprot Q5KWC1 299-878 # 99% sequence identity; Geobacillus kaustophilus TaxID:1462
    1. Domain for 1l3s:
    2. Domain for 1l3t:
    3. Domain for 1l3u:
    4. Domain for 1l3v:
    5. Domain for 1l5u:
    6. Domains for 1lv5:
      1. 2124568Domain d1lv5a1: 1lv5 A:297-468 [84719]
        Other proteins in same PDB: d1lv5a2, d1lv5b2
        protein/DNA complex; complexed with dcp, mg, mn, so4
      2. 2124569Domain d1lv5b1: 1lv5 B:297-468 [84721]
        Other proteins in same PDB: d1lv5a2, d1lv5b2
        protein/DNA complex; complexed with dcp, mg, mn, so4
    7. Domain for 1njw:
    8. Domain for 1njx:
    9. Domain for 1njy:
    10. Domain for 1njz:
    11. Domain for 1nk0:
    12. Domain for 1nk4:
    13. Domain for 1nk5:
    14. Domain for 1nk6:
    15. Domain for 1nk7:
    16. Domain for 1nk8:
    17. Domain for 1nk9:
    18. Domain for 1nkb:
    19. Domain for 1nkc:
    20. Domain for 1nke:
    21. Domain for 1u45:
    22. Domain for 1u47:
    23. Domain for 1u48:
    24. Domain for 1u49:
    25. Domain for 1u4b:
    26. Domain for 1ua0:
    27. Domain for 1ua1:
    28. Domain for 1xc9:
    29. Domain for 1xwl:
    30. Domain for 2bdp:
    31. Domain for 2hhq:
    32. Domain for 2hhs:
    33. Domain for 2hht:
    34. Domain for 2hhu:
    35. Domain for 2hhv:
    36. Domains for 2hhw:
      1. 2124541Domain d2hhwa1: 2hhw A:297-468 [136516]
        Other proteins in same PDB: d2hhwa2, d2hhwd2
        automatically matched to d1l3sa1
        protein/DNA complex; complexed with 23t, mn, so4, suc
      2. 2124542Domain d2hhwd1: 2hhw D:297-468 [136518]
        Other proteins in same PDB: d2hhwa2, d2hhwd2
        automatically matched to d1l3sa1
        protein/DNA complex; complexed with 23t, mn, so4, suc
    37. Domain for 2hhx:
    38. Domains for 2hvh:
      1. 2124573Domain d2hvha1: 2hvh A:297-468 [136804]
        Other proteins in same PDB: d2hvha2, d2hvhd2
        protein/DNA complex; complexed with dct, mn, so4, suc
      2. 2124574Domain d2hvhd1: 2hvh D:297-468 [136806]
        Other proteins in same PDB: d2hvha2, d2hvhd2
        protein/DNA complex; complexed with dct, mn, so4, suc
    39. Domains for 2hvi:
      1. 2124551Domain d2hvia1: 2hvi A:297-468 [136808]
        Other proteins in same PDB: d2hvia2, d2hvid2
        protein/DNA complex; complexed with dct, mg, so4, suc
      2. 2124552Domain d2hvid1: 2hvi D:297-468 [136810]
        Other proteins in same PDB: d2hvia2, d2hvid2
        protein/DNA complex; complexed with dct, mg, so4, suc
    40. Domain for 3bdp:
    41. Domain for 3eyz:
    42. Domains for 3ez5:
      1. 2124548Domain d3ez5a1: 3ez5 A:297-468 [232129]
        Other proteins in same PDB: d3ez5a2, d3ez5d2
        automated match to d2hvia1
        protein/DNA complex; complexed with dad, so4, suc, zn
      2. 2124549Domain d3ez5d1: 3ez5 D:298-468 [232131]
        Other proteins in same PDB: d3ez5a2, d3ez5d2
        automated match to d2hvia1
        protein/DNA complex; complexed with dad, so4, suc, zn
    43. Domain for 4bdp:
  2. 2124575Escherichia coli [TaxId:562] [53120] (14 PDB entries)
    1. Domain for 1d8y:
    2. Domain for 1d9d:
    3. Domain for 1d9f:
    4. Domain for 1dpi:
    5. Domain for 1kfd:
    6. Domain for 1kfs:
    7. Domain for 1kln:
    8. Domain for 1krp:
    9. Domain for 1ksp:
    10. Domain for 1qsl:
    11. Domain for 2kfn:
    12. Domain for 2kfz:
    13. Domain for 2kzm:
    14. Domain for 2kzz:
  3. 2124590Thermus aquaticus [TaxId:271] [53121] (29 PDB entries)
    1. Domain for 1bgx:
    2. Domain for 1cmw:
    3. Domain for 1jxe:
    4. Domain for 1ktq:
    5. Domain for 1qss:
    6. Domain for 1qsy:
    7. Domain for 1qtm:
    8. Domain for 1taq:
    9. Domain for 1tau:
    10. Domain for 2ktq:
    11. Domain for 3ktq:
    12. Domain for 3m8r:
    13. Domain for 3m8s:
    14. Domain for 3oju:
    15. Domain for 3py8:
    16. Domain for 3rr7:
    17. Domain for 3rr8:
    18. Domain for 3rrg:
    19. Domain for 3rrh:
    20. Domain for 3rtv:
    21. Domain for 3t3f:
    22. Domain for 4df4:
    23. Domain for 4dfp:
    24. Domain for 4dle:
    25. Domain for 4dlg:
    26. Domain for 4ktq:
    27. Domain for 4n56:
    28. Domain for 4n5s:
    29. Domain for 5ktq:

More info for Protein Exonuclease domain of prokaryotic DNA polymerase from c.55.3.5: DnaQ-like 3'-5' exonuclease

Timeline for Protein Exonuclease domain of prokaryotic DNA polymerase from c.55.3.5: DnaQ-like 3'-5' exonuclease: