PDB entry 1d9d

View 1d9d on RCSB PDB site
Description: crystall structure of the complex of DNA polymerase I klenow fragment with short DNA fragment carrying 2'-0-aminopropyl-RNA modifications 5'-d(tcg)-ap(auc)-3'
Class: transferase/DNA, RNA
Keywords: klenow fragment, 2'-o-aminopropyl nucleotides, transferase/DNA, RNA complex
Deposited on 1999-10-27, released 1999-12-02
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.18 Å
R-factor: 0.215
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA polymerase I
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P00582 (0-604)
      • engineered (0)
    Domains in SCOPe 2.08: d1d9da1, d1d9da2
  • Chain 'B':
    Compound: 5'-d(*tp*cp*gp)-r(ap*(u31)p*(c31))-3'
  • Heterogens: ZN, MG, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1d9dA (A:)
misydnyvtildeetlkawiaklekapvfafdtetdsldnisanlvglsfaiepgvaayi
pvahdyldapdqisreralellkplledekalkvgqnlkydrgilanygielrgiafdtm
lesyilnsvagrhdmdslaerwlkhktitfeeiagkgknqltfnqialeeagryaaedad
vtlqlhlkmwpdlqkhkgplnvfeniemplvpvlsrierngvkidpkvlhnhseeltlrl
aelekkaheiageefnlsstkqlqtilfekqgikplkktpggapstseevleelaldypl
pkvileyrglaklkstytdklplminpktgrvhtsyhqavtatgrlsstdpnlqnipvrn
eegrrirqafiapedyvivsadysqielrimahlsrdkglltafaegkdihrataaevfg
lpletvtseqrrsakainfgliygmsafglarqlniprkeaqkymdlyferypgvleyme
rtraqakeqgyvetldgrrlylpdikssngarraaaeraainapmqgtaadiikramiav
dawlqaeqprvrmimqvhdelvfevhkddvdavakqihqlmenctrldvpllvevgsgen
wdqah

    Sequence, based on observed residues (ATOM records): (download) 
    >1d9dA (A:)
misydnyvtildeetlkawiaklekapvfafdtetdsldnisanlvglsfaiepgvaayi
pvahdyldapdqisreralellkplledekalkvgqnlkydrgilanygielrgiafdtm
lesyilnsvagrhdmdslaerwlkhktitfeeiagkgknqltfnqialeeagryaaedad
vtlqlhlkmwpdlqkhkgplnvfeniemplvpvlsrierngvkidpkvlhnhseeltlrl
aelekkaheiageefnlsstkqlqtilfekqgikplkktpstseevleelaldyplpkvi
leyrglaklkstytdklplminpktgrvhtsyhqavtatgrlsstdpnlqnipvrneegr
rirqafiapedyvivsadysqielrimahlsrdkglltafaegkdihrataaevfglple
tvtseqrrsakainfgliygmsafglarqlniprkeaqkymdlyferypgvleymertra
qakeqgyvetldgrrlylpdikssngarraaaeraainapmqgtaadiikramiavdawl
qaeqprvrmimqvhdelvfevhkddvdavakqihqlmenctrldvpllvevgsgenwdqa
h

  • Chain 'B':
    No sequence available.