PDB entry 3rtv

View 3rtv on RCSB PDB site
Description: Crystal structure of the large fragment of DNA polymerase I from Thermus Aquaticus in a closed ternary complex with natural primer/template DNA
Class: transferase/DNA
Keywords: DNA polymerase, TRANSFERASE-DNA complex
Deposited on 2011-05-04, released 2012-05-30
The last revision prior to the SCOPe 2.08 freeze date was dated 2012-09-12, with a file datestamp of 2012-09-07.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.164
AEROSPACI score: 0.52 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA polymerase I, thermostable
    Species: Thermus aquaticus [TaxId:271]
    Gene: pol I, pol1, polA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3rtva1, d3rtva2
  • Chain 'B':
    Compound: (5'-d(*gp*ap*cp*cp*ap*cp*gp*gp*cp*gp*cp*(ddg))-3')
  • Chain 'C':
    Compound: (5'-d(*ap*ap*ap*gp*cp*gp*cp*gp*cp*cp*gp*tp*gp*gp*tp*c)-3')
  • Heterogens: DCP, MG, GOL, ACT, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3rtvA (A:)
    aleeapwpppegafvgfvlsrkepmwadllalaaarggrvhrapepykalrdlkeargll
    akdlsvlalreglglppgddpmllaylldpsnttpegvarryggewteeageraalserl
    fanlwgrlegeerllwlyreverplsavlahmeatgvrldvaylralslevaeeiarlea
    evfrlaghpfnlnsrdqlervlfdelglpaigktektgkrstsaavlealreahpiveki
    lqyreltklkstyidplpdlihprtgrlhtrfnqtatatgrlsssdpnlqnipvrtplgq
    rirrafiaeegwllvaldysqielrvlahlsgdenlirvfqegrdihtetaswmfgvpre
    avdplmrraaktinfgvlygmsahrlsqelaipyeeaqafieryfqsfpkvrawiektle
    egrrrgyvetlfgrrryvpdlearvksvreaaermafnmpvqgtaadlmklamvklfprl
    eemgarmllqvhdelvleapkeraeavarlakevmegvyplavplevevgigedwlsake
    

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.