Lineage for Species: Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2122050Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. 2123751Superfamily c.55.3: Ribonuclease H-like [53098] (15 families) (S)
    consists of one domain of this fold
  5. 2124334Family c.55.3.5: DnaQ-like 3'-5' exonuclease [53118] (17 protein domains)
    contains Pfam PF00929
  6. 2124525Protein Exonuclease domain of prokaryotic DNA polymerase [53119] (3 species)
    part of Klenow fragment, KF
  7. 2124526Species Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId:1422] [53122] (43 PDB entries)
    Uniprot Q45458 298-876 # 88% sequence identity ! Uniprot Q5KWC1 299-878 # 99% sequence identity; Geobacillus kaustophilus TaxID:1462

PDB entries in Species: Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]:

  1. Domain(s) for 1l3s:
  2. Domain(s) for 1l3t:
  3. Domain(s) for 1l3u:
  4. Domain(s) for 1l3v:
  5. Domain(s) for 1l5u:
  6. Domain(s) for 1lv5:
    1. 2124568Domain d1lv5a1: 1lv5 A:297-468 [84719]
      Other proteins in same PDB: d1lv5a2, d1lv5b2
      protein/DNA complex; complexed with dcp, mg, mn, so4
    2. 2124569Domain d1lv5b1: 1lv5 B:297-468 [84721]
      Other proteins in same PDB: d1lv5a2, d1lv5b2
      protein/DNA complex; complexed with dcp, mg, mn, so4
  7. Domain(s) for 1njw:
  8. Domain(s) for 1njx:
  9. Domain(s) for 1njy:
  10. Domain(s) for 1njz:
  11. Domain(s) for 1nk0:
  12. Domain(s) for 1nk4:
  13. Domain(s) for 1nk5:
  14. Domain(s) for 1nk6:
  15. Domain(s) for 1nk7:
  16. Domain(s) for 1nk8:
  17. Domain(s) for 1nk9:
  18. Domain(s) for 1nkb:
  19. Domain(s) for 1nkc:
  20. Domain(s) for 1nke:
  21. Domain(s) for 1u45:
  22. Domain(s) for 1u47:
  23. Domain(s) for 1u48:
  24. Domain(s) for 1u49:
  25. Domain(s) for 1u4b:
  26. Domain(s) for 1ua0:
  27. Domain(s) for 1ua1:
  28. Domain(s) for 1xc9:
  29. Domain(s) for 1xwl:
  30. Domain(s) for 2bdp:
  31. Domain(s) for 2hhq:
  32. Domain(s) for 2hhs:
  33. Domain(s) for 2hht:
  34. Domain(s) for 2hhu:
  35. Domain(s) for 2hhv:
  36. Domain(s) for 2hhw:
    1. 2124541Domain d2hhwa1: 2hhw A:297-468 [136516]
      Other proteins in same PDB: d2hhwa2, d2hhwd2
      automatically matched to d1l3sa1
      protein/DNA complex; complexed with 23t, mn, so4, suc
    2. 2124542Domain d2hhwd1: 2hhw D:297-468 [136518]
      Other proteins in same PDB: d2hhwa2, d2hhwd2
      automatically matched to d1l3sa1
      protein/DNA complex; complexed with 23t, mn, so4, suc
  37. Domain(s) for 2hhx:
  38. Domain(s) for 2hvh:
    1. 2124573Domain d2hvha1: 2hvh A:297-468 [136804]
      Other proteins in same PDB: d2hvha2, d2hvhd2
      protein/DNA complex; complexed with dct, mn, so4, suc
    2. 2124574Domain d2hvhd1: 2hvh D:297-468 [136806]
      Other proteins in same PDB: d2hvha2, d2hvhd2
      protein/DNA complex; complexed with dct, mn, so4, suc
  39. Domain(s) for 2hvi:
    1. 2124551Domain d2hvia1: 2hvi A:297-468 [136808]
      Other proteins in same PDB: d2hvia2, d2hvid2
      protein/DNA complex; complexed with dct, mg, so4, suc
    2. 2124552Domain d2hvid1: 2hvi D:297-468 [136810]
      Other proteins in same PDB: d2hvia2, d2hvid2
      protein/DNA complex; complexed with dct, mg, so4, suc
  40. Domain(s) for 3bdp:
  41. Domain(s) for 3eyz:
  42. Domain(s) for 3ez5:
    1. 2124548Domain d3ez5a1: 3ez5 A:297-468 [232129]
      Other proteins in same PDB: d3ez5a2, d3ez5d2
      automated match to d2hvia1
      protein/DNA complex; complexed with dad, so4, suc, zn
    2. 2124549Domain d3ez5d1: 3ez5 D:298-468 [232131]
      Other proteins in same PDB: d3ez5a2, d3ez5d2
      automated match to d2hvia1
      protein/DNA complex; complexed with dad, so4, suc, zn
  43. Domain(s) for 4bdp:

More info for Species Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId:1422] from c.55.3.5 Exonuclease domain of prokaryotic DNA polymerase

Timeline for Species Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId:1422] from c.55.3.5 Exonuclease domain of prokaryotic DNA polymerase: