Lineage for d2hhwd1 (2hhw D:297-468)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2122050Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. 2123751Superfamily c.55.3: Ribonuclease H-like [53098] (15 families) (S)
    consists of one domain of this fold
  5. 2124334Family c.55.3.5: DnaQ-like 3'-5' exonuclease [53118] (17 protein domains)
    contains Pfam PF00929
  6. 2124525Protein Exonuclease domain of prokaryotic DNA polymerase [53119] (3 species)
    part of Klenow fragment, KF
  7. 2124526Species Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId:1422] [53122] (43 PDB entries)
    Uniprot Q45458 298-876 # 88% sequence identity ! Uniprot Q5KWC1 299-878 # 99% sequence identity; Geobacillus kaustophilus TaxID:1462
  8. 2124542Domain d2hhwd1: 2hhw D:297-468 [136518]
    Other proteins in same PDB: d2hhwa2, d2hhwd2
    automatically matched to d1l3sa1
    protein/DNA complex; complexed with 23t, mn, so4, suc

Details for d2hhwd1

PDB Entry: 2hhw (more details), 1.88 Å

PDB Description: ddTTP:O6-methyl-guanine pair in the polymerase active site, in the closed conformation
PDB Compounds: (D:) DNA polymerase I

SCOPe Domain Sequences for d2hhwd1:

Sequence; same for both SEQRES and ATOM records: (download)

>d2hhwd1 c.55.3.5 (D:297-468) Exonuclease domain of prokaryotic DNA polymerase {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]}

SCOPe Domain Coordinates for d2hhwd1:

Click to download the PDB-style file with coordinates for d2hhwd1.
(The format of our PDB-style files is described here.)

Timeline for d2hhwd1:

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