Lineage for d2bdpa1 (2bdp A:297-468)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2122050Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. 2123751Superfamily c.55.3: Ribonuclease H-like [53098] (15 families) (S)
    consists of one domain of this fold
  5. 2124334Family c.55.3.5: DnaQ-like 3'-5' exonuclease [53118] (17 protein domains)
    contains Pfam PF00929
  6. 2124525Protein Exonuclease domain of prokaryotic DNA polymerase [53119] (3 species)
    part of Klenow fragment, KF
  7. 2124526Species Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId:1422] [53122] (43 PDB entries)
    Uniprot Q45458 298-876 # 88% sequence identity ! Uniprot Q5KWC1 299-878 # 99% sequence identity; Geobacillus kaustophilus TaxID:1462
  8. 2124558Domain d2bdpa1: 2bdp A:297-468 [33709]
    Other proteins in same PDB: d2bdpa2
    protein/DNA complex; complexed with mg, so4

Details for d2bdpa1

PDB Entry: 2bdp (more details), 1.8 Å

PDB Description: crystal structure of bacillus dna polymerase i fragment complexed to 9 base pairs of duplex dna
PDB Compounds: (A:) protein (DNA polymerase I)

SCOPe Domain Sequences for d2bdpa1:

Sequence; same for both SEQRES and ATOM records: (download)

>d2bdpa1 c.55.3.5 (A:297-468) Exonuclease domain of prokaryotic DNA polymerase {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]}

SCOPe Domain Coordinates for d2bdpa1:

Click to download the PDB-style file with coordinates for d2bdpa1.
(The format of our PDB-style files is described here.)

Timeline for d2bdpa1: