PDB entry 3rrh

View 3rrh on RCSB PDB site
Description: Ternary Structure of the large fragment of Taq DNA polymerase bound to an abasic site and a ddTTP
Class: transferase/DNA
Keywords: DNA polymerase, Abasic site, Translesion synthesis, A-rule, TRANSFERASE-DNA complex
Deposited on 2011-04-29, released 2012-02-15
The last revision prior to the SCOPe 2.08 freeze date was dated 2012-05-09, with a file datestamp of 2012-05-04.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.168
AEROSPACI score: 0.54 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA polymerase I, thermostable
    Species: Thermus aquaticus [TaxId:271]
    Gene: pol I, pol1, polA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3rrha1, d3rrha2
  • Chain 'B':
    Compound: (5'-d(*gp*ap*cp*cp*ap*cp*gp*gp*cp*gp*cp*(2dt))-3')
  • Chain 'C':
    Compound: (5'-d(*ap*ap*ap*(3dr)p*ap*gp*cp*gp*cp*cp*gp*tp*gp*gp*tp*c)-3')
  • Heterogens: TTP, MG, GOL, PGE, ACT, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3rrhA (A:)
aleeapwpppegafvgfvlsrkepmwadllalaaarggrvhrapepykalrdlkeargll
akdlsvlalreglglppgddpmllaylldpsnttpegvarryggewteeageraalserl
fanlwgrlegeerllwlyreverplsavlahmeatgvrldvaylralslevaeeiarlea
evfrlaghpfnlnsrdqlervlfdelglpaigktektgkrstsaavlealreahpiveki
lqyreltklkstyidplpdlihprtgrlhtrfnqtatatgrlsssdpnlqnipvrtplgq
rirrafiaeegwllvaldysqielrvlahlsgdenlirvfqegrdihtetaswmfgvpre
avdplmrraaktinfgvlygmsahrlsqelaipyeeaqafieryfqsfpkvrawiektle
egrrrgyvetlfgrrryvpdlearvksvreaaermafnmpvqgtaadlmklamvklfprl
eemgarmllqvhdelvleapkeraeavarlakevmegvyplavplevevgigedwlsake

    Sequence, based on observed residues (ATOM records): (download) 
    >3rrhA (A:)
eeapwpppegafvgfvlsrkepmwadllalaaarggrvhrapepykalrdlkeargllak
dlsvlalreglglppgddpmllaylldpsnttpegvarryggewteeageraalserlfa
nlwgrlegeerllwlyreverplsavlahmeatgvrldvaylralslevaeeiarleaev
frlaghpfnlnsrdqlervlfdelglpaigktektgkrstsaavlealreahpivekilq
yreltklkstyidplpdlihprtgrlhtrfnqtatatgrlsssdpnlqnipvrtplgqri
rrafiaeegwllvaldysqielrvlahlsgdenlirvfqegrdihtetaswmfgvpreav
dplmrraaktinfgvlygmsahrlsqelaipyeeaqafieryfqsfpkvrawiektleeg
rrrgyvetlfgrrryvpdlearvksvreaaermafnmpvqgtaadlmklamvklfprlee
mgarmllqvhdelvleapkeraeavarlakevmegvyplavplevevgigedwlsake

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.