SCOPe 2.08: Protein: DNA repair protein Rad51, N-terminal domain

Lineage for Protein: DNA repair protein Rad51, N-terminal domain

Root: SCOPe 2.08
Class a: All alpha proteins [46456] (290 folds)
Fold a.60: SAM domain-like [47768] (17 superfamilies)
4-5 helices; bundle of two orthogonally packed alpha-hairpins; involved in the interactions with DNA and proteins
Superfamily a.60.4: Rad51 N-terminal domain-like [47794] (4 families)
contains one classic and one pseudo HhH motifs
Family a.60.4.1: DNA repair protein Rad51, N-terminal domain [47795] (1 protein)
Protein DNA repair protein Rad51, N-terminal domain [47796] (7 species)

Species:

Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [109871] (2 PDB entries)
Uniprot P25454 81-395
1. Domains for 1szp:
  1. Domain d1szpa1: 1szp A:81-144 [106176]
    Other proteins in same PDB: d1szpa2, d1szpb2, d1szpc2, d1szpd2, d1szpe2, d1szpf2
    complexed with so4
  2. Domain d1szpb1: 1szp B:89-144 [106178]
    Other proteins in same PDB: d1szpa2, d1szpb2, d1szpc2, d1szpd2, d1szpe2, d1szpf2
    complexed with so4
  3. Domain d1szpc1: 1szp C:89-144 [106180]
    Other proteins in same PDB: d1szpa2, d1szpb2, d1szpc2, d1szpd2, d1szpe2, d1szpf2
    complexed with so4
  4. Domain d1szpd1: 1szp D:81-144 [106182]
    Other proteins in same PDB: d1szpa2, d1szpb2, d1szpc2, d1szpd2, d1szpe2, d1szpf2
    complexed with so4
  5. Domain d1szpe1: 1szp E:81-144 [106184]
    Other proteins in same PDB: d1szpa2, d1szpb2, d1szpc2, d1szpd2, d1szpe2, d1szpf2
    complexed with so4
  6. Domain d1szpf1: 1szp F:81-144 [106186]
    Other proteins in same PDB: d1szpa2, d1szpb2, d1szpc2, d1szpd2, d1szpe2, d1szpf2
    complexed with so4
2. Domain for 3lda:
  - Domain d3ldaa1: 3lda A:78-144 [232824]
    Other proteins in same PDB: d3ldaa2
    automated match to d1szpa1
    complexed with cl; mutant
Human (Homo sapiens) [TaxId:9606] [47797] (1 PDB entry)
- Domain for 1b22:
  - Domain d1b22a_: 1b22 A: [17969]
Methanococcus voltae [TaxId:2188] [109872] (11 PDB entries)
Uniprot O73948
1. Domain for 1t4g:
  - Domain d1t4ga1: 1t4g A:5-64 [106418]
    Other proteins in same PDB: d1t4ga2
    complexed with anp, mg
2. Domain for 1xu4:
  - Domain d1xu4a1: 1xu4 A:5-64 [116045]
    Other proteins in same PDB: d1xu4a2
    complexed with anp, k, mg
3. Domain for 1z4b:
  - Domain d1z4ba1: 1z4b A:5-64 [303428]
    Other proteins in same PDB: d1z4ba2
    automated match to d1t4ga1
    complexed with adp, k, mg
4. Domain for 1z4c:
  - Domain d1z4ca1: 1z4c A:5-64 [303430]
    Other proteins in same PDB: d1z4ca2
    automated match to d1t4ga1
    complexed with anp, k, mg
5. Domain for 1z4d:
  - Domain d1z4da1: 1z4d A:5-64 [303432]
    Other proteins in same PDB: d1z4da2
    automated match to d1t4ga1
    complexed with anp, k, mg
6. Domain for 2b21:
  - Domain d2b21a1: 2b21 A:5-64 [127687]
    Other proteins in same PDB: d2b21a2
    automated match to d1t4ga1
    complexed with anp, k, mg
7. Domain for 2fpk:
  - Domain d2fpka1: 2fpk A:5-64 [204254]
    Other proteins in same PDB: d2fpka2
    automated match to d1t4ga1
    complexed with adp, k, mg
8. Domain for 2fpl:
  - Domain d2fpla1: 2fpl A:5-64 [204256]
    Other proteins in same PDB: d2fpla2
    automated match to d1t4ga1
    complexed with anp, k, mg
9. Domain for 2fpm:
  - Domain d2fpma1: 2fpm A:5-64 [204258]
    Other proteins in same PDB: d2fpma2
    automated match to d1t4ga1
    complexed with anp, k, mg
10. Domain for 2i1q:
  - Domain d2i1qa1: 2i1q A:5-64 [136984]
    Other proteins in same PDB: d2i1qa2
    automated match to d1t4ga1
    complexed with anp, ca, mg, na
11. Domain for 3fyh:
  - Domain d3fyha1: 3fyh A:5-64 [210253]
    Other proteins in same PDB: d3fyha2
    automated match to d1t4ga1
    protein/DNA complex; complexed with adp, mg, na, w
Methanococcus voltae [TaxId:523842] [226806] (1 PDB entry)
- Domain for 3ntu:
  - Domain d3ntua1: 3ntu A:4-63 [214055]
    Other proteins in same PDB: d3ntua2
    automated match to d1pzna1
    complexed with anp, mg, na; mutant

Pyrococcus furiosus [TaxId:2261] [101250] (1 PDB entry)

Domain for 1pzn:

Domain d1pzna1: 1pzn A:35-95 [95456]
Other proteins in same PDB: d1pzna2, d1pznb1, d1pznc1, d1pznd1, d1pzne1, d1pznf1, d1pzng1
disordered in the other chains of this PDB entry
complexed with gol, imd, mpd, so4

Sulfolobus solfataricus [TaxId:2287] [225208] (2 PDB entries)
1. Domain for 2dfl:
  - Domain d2dfla1: 2dfl A:13-72 [203985]
    Other proteins in same PDB: d2dfla2
    automated match to d1pzna1
2. Domains for 2zub:
  1. Domain d2zuba1: 2zub A:13-72 [207986]
    Other proteins in same PDB: d2zuba2, d2zubb2
    automated match to d1pzna1
  2. Domain d2zubb1: 2zub B:13-72 [207988]
    Other proteins in same PDB: d2zuba2, d2zubb2
    automated match to d1pzna1
Sulfolobus solfataricus [TaxId:273057] [225377] (1 PDB entry)
- Domains for 2z43:
  1. Domain d2z43b1: 2z43 B:12-72 [207769]
    Other proteins in same PDB: d2z43a_, d2z43b2, d2z43c2
    automated match to d1pzna1
  2. Domain d2z43c1: 2z43 C:12-72 [207771]
    Other proteins in same PDB: d2z43a_, d2z43b2, d2z43c2
    automated match to d1pzna1

More info for Protein DNA repair protein Rad51, N-terminal domain from a.60.4.1: DNA repair protein Rad51, N-terminal domain

Timeline for Protein DNA repair protein Rad51, N-terminal domain from a.60.4.1: DNA repair protein Rad51, N-terminal domain:

Protein DNA repair protein Rad51, N-terminal domain from a.60.4.1: DNA repair protein Rad51, N-terminal domain first appeared (with stable ids) in SCOP 1.55
Protein DNA repair protein Rad51, N-terminal domain from a.60.4.1: DNA repair protein Rad51, N-terminal domain appears in SCOPe 2.07