Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2433922Fold c.5: MurCD N-terminal domain [51983] (1 superfamily)
    3 layers: a/b/a; parallel beta-sheet of 5 strands, order 32145; incomplete Rossmann-like fold; binds UDP group
  4. 2433923Superfamily c.5.1: MurCD N-terminal domain [51984] (2 families) (S)
  5. 2433946Family c.5.1.0: automated matches [254240] (1 protein)
    not a true family
  6. 2433947Protein automated matches [254548] (7 species)
    not a true protein

Species:

  1. 2433948Escherichia coli [TaxId:562] [255257] (8 PDB entries)
    1. Domain for 2jff:
    2. Domain for 2jfg:
    3. Domain for 2jfh:
    4. Domain for 2uuo:
    5. Domain for 2uup:
    6. Domain for 2vtd:
    7. Domain for 2vte:
    8. Domain for 2xpc:
  2. 2433957Escherichia coli [TaxId:668369] [255649] (2 PDB entries)
    1. Domain for 2wjp:
    2. Domain for 2x5o:
  3. 2433960Escherichia coli [TaxId:83333] [316487] (1 PDB entry)
  4. 2433962Neisseria meningitidis [TaxId:122586] [346278] (1 PDB entry)
  5. 2433965Pseudomonas aeruginosa [TaxId:208964] [334946] (3 PDB entries)
    1. Domains for 5vvw:
      1. 2433966Domain d5vvwa1: 5vvw A:16-103 [334988]
        Other proteins in same PDB: d5vvwa2, d5vvwa3, d5vvwb2, d5vvwb3, d5vvwc2, d5vvwc3, d5vvwd2, d5vvwd3, d5vvwe2, d5vvwe3, d5vvwf2, d5vvwf3, d5vvwg2, d5vvwg3, d5vvwh2, d5vvwh3
        automated match to d4hv4a1
        complexed with edo
      2. 2433967Domain d5vvwb1: 5vvw B:16-103 [335034]
        Other proteins in same PDB: d5vvwa2, d5vvwa3, d5vvwb2, d5vvwb3, d5vvwc2, d5vvwc3, d5vvwd2, d5vvwd3, d5vvwe2, d5vvwe3, d5vvwf2, d5vvwf3, d5vvwg2, d5vvwg3, d5vvwh2, d5vvwh3
        automated match to d4hv4a1
        complexed with edo
      3. 2433968Domain d5vvwc1: 5vvw C:16-103 [334947]
        Other proteins in same PDB: d5vvwa2, d5vvwa3, d5vvwb2, d5vvwb3, d5vvwc2, d5vvwc3, d5vvwd2, d5vvwd3, d5vvwe2, d5vvwe3, d5vvwf2, d5vvwf3, d5vvwg2, d5vvwg3, d5vvwh2, d5vvwh3
        automated match to d4hv4a1
        complexed with edo
      4. 2433969Domain d5vvwd1: 5vvw D:16-103 [334980]
        Other proteins in same PDB: d5vvwa2, d5vvwa3, d5vvwb2, d5vvwb3, d5vvwc2, d5vvwc3, d5vvwd2, d5vvwd3, d5vvwe2, d5vvwe3, d5vvwf2, d5vvwf3, d5vvwg2, d5vvwg3, d5vvwh2, d5vvwh3
        automated match to d4hv4a1
        complexed with edo
      5. 2433970Domain d5vvwe1: 5vvw E:16-103 [334953]
        Other proteins in same PDB: d5vvwa2, d5vvwa3, d5vvwb2, d5vvwb3, d5vvwc2, d5vvwc3, d5vvwd2, d5vvwd3, d5vvwe2, d5vvwe3, d5vvwf2, d5vvwf3, d5vvwg2, d5vvwg3, d5vvwh2, d5vvwh3
        automated match to d4hv4a1
        complexed with edo
      6. 2433971Domain d5vvwf1: 5vvw F:16-103 [334963]
        Other proteins in same PDB: d5vvwa2, d5vvwa3, d5vvwb2, d5vvwb3, d5vvwc2, d5vvwc3, d5vvwd2, d5vvwd3, d5vvwe2, d5vvwe3, d5vvwf2, d5vvwf3, d5vvwg2, d5vvwg3, d5vvwh2, d5vvwh3
        automated match to d4hv4a1
        complexed with edo
      7. 2433972Domain d5vvwg1: 5vvw G:16-103 [335016]
        Other proteins in same PDB: d5vvwa2, d5vvwa3, d5vvwb2, d5vvwb3, d5vvwc2, d5vvwc3, d5vvwd2, d5vvwd3, d5vvwe2, d5vvwe3, d5vvwf2, d5vvwf3, d5vvwg2, d5vvwg3, d5vvwh2, d5vvwh3
        automated match to d4hv4a1
        complexed with edo
      8. 2433973Domain d5vvwh1: 5vvw H:16-103 [334991]
        Other proteins in same PDB: d5vvwa2, d5vvwa3, d5vvwb2, d5vvwb3, d5vvwc2, d5vvwc3, d5vvwd2, d5vvwd3, d5vvwe2, d5vvwe3, d5vvwf2, d5vvwf3, d5vvwg2, d5vvwg3, d5vvwh2, d5vvwh3
        automated match to d4hv4a1
        complexed with edo
    2. Domains for 6x9f:
      1. 3093188Domain d6x9fg1: 6x9f G:9-96 [393250]
        Other proteins in same PDB: d6x9fa2, d6x9fa3, d6x9fb2, d6x9fb3, d6x9fc2, d6x9fc3, d6x9fd2, d6x9fd3, d6x9fe2, d6x9fe3, d6x9ff2, d6x9ff3, d6x9fg2, d6x9fg3, d6x9fh2, d6x9fh3
        automated match to d4hv4a1
        complexed with cl, dms, edo, uxp
      2. 3093193Domain d6x9ff1: 6x9f F:9-96 [393255]
        Other proteins in same PDB: d6x9fa2, d6x9fa3, d6x9fb2, d6x9fb3, d6x9fc2, d6x9fc3, d6x9fd2, d6x9fd3, d6x9fe2, d6x9fe3, d6x9ff2, d6x9ff3, d6x9fg2, d6x9fg3, d6x9fh2, d6x9fh3
        automated match to d4hv4a1
        complexed with cl, dms, edo, uxp
      3. 3093197Domain d6x9fh1: 6x9f H:9-96 [393259]
        Other proteins in same PDB: d6x9fa2, d6x9fa3, d6x9fb2, d6x9fb3, d6x9fc2, d6x9fc3, d6x9fd2, d6x9fd3, d6x9fe2, d6x9fe3, d6x9ff2, d6x9ff3, d6x9fg2, d6x9fg3, d6x9fh2, d6x9fh3
        automated match to d4hv4a1
        complexed with cl, dms, edo, uxp
      4. 3093203Domain d6x9fe1: 6x9f E:9-96 [393265]
        Other proteins in same PDB: d6x9fa2, d6x9fa3, d6x9fb2, d6x9fb3, d6x9fc2, d6x9fc3, d6x9fd2, d6x9fd3, d6x9fe2, d6x9fe3, d6x9ff2, d6x9ff3, d6x9fg2, d6x9fg3, d6x9fh2, d6x9fh3
        automated match to d4hv4a1
        complexed with cl, dms, edo, uxp
      5. 3093211Domain d6x9fb1: 6x9f B:9-96 [393273]
        Other proteins in same PDB: d6x9fa2, d6x9fa3, d6x9fb2, d6x9fb3, d6x9fc2, d6x9fc3, d6x9fd2, d6x9fd3, d6x9fe2, d6x9fe3, d6x9ff2, d6x9ff3, d6x9fg2, d6x9fg3, d6x9fh2, d6x9fh3
        automated match to d4hv4a1
        complexed with cl, dms, edo, uxp
      6. 3093214Domain d6x9fc1: 6x9f C:9-96 [393276]
        Other proteins in same PDB: d6x9fa2, d6x9fa3, d6x9fb2, d6x9fb3, d6x9fc2, d6x9fc3, d6x9fd2, d6x9fd3, d6x9fe2, d6x9fe3, d6x9ff2, d6x9ff3, d6x9fg2, d6x9fg3, d6x9fh2, d6x9fh3
        automated match to d4hv4a1
        complexed with cl, dms, edo, uxp
      7. 3093236Domain d6x9fd1: 6x9f D:9-96 [393298]
        Other proteins in same PDB: d6x9fa2, d6x9fa3, d6x9fb2, d6x9fb3, d6x9fc2, d6x9fc3, d6x9fd2, d6x9fd3, d6x9fe2, d6x9fe3, d6x9ff2, d6x9ff3, d6x9fg2, d6x9fg3, d6x9fh2, d6x9fh3
        automated match to d4hv4a1
        complexed with cl, dms, edo, uxp
      8. 3093301Domain d6x9fa1: 6x9f A:9-96 [393363]
        Other proteins in same PDB: d6x9fa2, d6x9fa3, d6x9fb2, d6x9fb3, d6x9fc2, d6x9fc3, d6x9fd2, d6x9fd3, d6x9fe2, d6x9fe3, d6x9ff2, d6x9ff3, d6x9fg2, d6x9fg3, d6x9fh2, d6x9fh3
        automated match to d4hv4a1
        complexed with cl, dms, edo, uxp
    3. Domains for 6x9n:
      1. 3093154Domain d6x9nd1: 6x9n D:16-103 [393216]
        Other proteins in same PDB: d6x9na2, d6x9na3, d6x9nb2, d6x9nb3, d6x9nc2, d6x9nc3, d6x9nd2, d6x9nd3, d6x9ne2, d6x9ne3, d6x9nf2, d6x9nf3, d6x9ng2, d6x9ng3, d6x9nh2, d6x9nh3
        automated match to d4hv4a1
        complexed with cl, dms, edo, uyd, val
      2. 3093161Domain d6x9nf1: 6x9n F:16-103 [393223]
        Other proteins in same PDB: d6x9na2, d6x9na3, d6x9nb2, d6x9nb3, d6x9nc2, d6x9nc3, d6x9nd2, d6x9nd3, d6x9ne2, d6x9ne3, d6x9nf2, d6x9nf3, d6x9ng2, d6x9ng3, d6x9nh2, d6x9nh3
        automated match to d4hv4a1
        complexed with cl, dms, edo, uyd, val
      3. 3093170Domain d6x9nh1: 6x9n H:16-103 [393232]
        Other proteins in same PDB: d6x9na2, d6x9na3, d6x9nb2, d6x9nb3, d6x9nc2, d6x9nc3, d6x9nd2, d6x9nd3, d6x9ne2, d6x9ne3, d6x9nf2, d6x9nf3, d6x9ng2, d6x9ng3, d6x9nh2, d6x9nh3
        automated match to d4hv4a1
        complexed with cl, dms, edo, uyd, val
      4. 3093177Domain d6x9ng1: 6x9n G:16-103 [393239]
        Other proteins in same PDB: d6x9na2, d6x9na3, d6x9nb2, d6x9nb3, d6x9nc2, d6x9nc3, d6x9nd2, d6x9nd3, d6x9ne2, d6x9ne3, d6x9nf2, d6x9nf3, d6x9ng2, d6x9ng3, d6x9nh2, d6x9nh3
        automated match to d4hv4a1
        complexed with cl, dms, edo, uyd, val
      5. 3093180Domain d6x9na1: 6x9n A:16-103 [393242]
        Other proteins in same PDB: d6x9na2, d6x9na3, d6x9nb2, d6x9nb3, d6x9nc2, d6x9nc3, d6x9nd2, d6x9nd3, d6x9ne2, d6x9ne3, d6x9nf2, d6x9nf3, d6x9ng2, d6x9ng3, d6x9nh2, d6x9nh3
        automated match to d4hv4a1
        complexed with cl, dms, edo, uyd, val
      6. 3093184Domain d6x9nc1: 6x9n C:16-103 [393246]
        Other proteins in same PDB: d6x9na2, d6x9na3, d6x9nb2, d6x9nb3, d6x9nc2, d6x9nc3, d6x9nd2, d6x9nd3, d6x9ne2, d6x9ne3, d6x9nf2, d6x9nf3, d6x9ng2, d6x9ng3, d6x9nh2, d6x9nh3
        automated match to d4hv4a1
        complexed with cl, dms, edo, uyd, val
      7. 3093219Domain d6x9ne1: 6x9n E:16-103 [393281]
        Other proteins in same PDB: d6x9na2, d6x9na3, d6x9nb2, d6x9nb3, d6x9nc2, d6x9nc3, d6x9nd2, d6x9nd3, d6x9ne2, d6x9ne3, d6x9nf2, d6x9nf3, d6x9ng2, d6x9ng3, d6x9nh2, d6x9nh3
        automated match to d4hv4a1
        complexed with cl, dms, edo, uyd, val
      8. 3093284Domain d6x9nb1: 6x9n B:16-103 [393346]
        Other proteins in same PDB: d6x9na2, d6x9na3, d6x9nb2, d6x9nb3, d6x9nc2, d6x9nc3, d6x9nd2, d6x9nd3, d6x9ne2, d6x9ne3, d6x9nf2, d6x9nf3, d6x9ng2, d6x9ng3, d6x9nh2, d6x9nh3
        automated match to d4hv4a1
        complexed with cl, dms, edo, uyd, val
  6. 2433974Yersinia pestis [TaxId:214092] [256290] (1 PDB entry)
  7. 3050463Acinetobacter baumannii [TaxId:470] [350525] (1 PDB entry)

More info for Protein automated matches from c.5.1.0: automated matches

Timeline for Protein automated matches from c.5.1.0: automated matches: