SCOPe 2.08: Domain d5a5fa2: 5a5f A:94-297

Lineage for d5a5fa2 (5a5f A:94-297)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.72: Ribokinase-like [53612] (3 superfamilies)
   core: 3 layers: a/b/a; mixed beta-sheet of 8 strands, order 21345678, strand 7 is antiparallel to the rest
   potential superfamily: members of this fold have similar functions but different ATP-binding sites

4. Superfamily c.72.2: MurD-like peptide ligases, catalytic domain [53623] (3 families)
   has extra strand located between strands 1 and 2

5. Family c.72.2.1: MurCDEF [53624] (5 proteins)
   automatically mapped to Pfam PF08245

6. Protein automated matches [254549] (3 species)
   not a true protein

7. Species Escherichia coli [TaxId:83333] [316489] (1 PDB entry)

8. Domain d5a5fa2: 5a5f A:94-297 [316490]
   Other proteins in same PDB: d5a5fa1, d5a5fa3, d5a5fa4
   automated match to d4uaga3
   complexed with adp, mli, uma

Details for d5a5fa2

PDB Entry: 5a5f, 1.9 Å

PDB Description: crystal structure of murd ligase from escherichia coli in complex with uma and adp

PDB Compounds: (A:) udp-n-acetylmuramoylalanine--d-glutamate ligase

SCOPe Domain Sequences for d5a5fa2:

Sequence, based on SEQRES records:

>d5a5fa2 c.72.2.1 (A:94-297) automated matches {Escherichia coli [TaxId: 83333]}
dielfcreaqapivaitgsngkstvttlvgemakaagvnvgvggniglpalmllddecel
yvlelssfqlettsslqavaatilnvtedhmdrypfglqqyraaklriyenakvcvvnad
daltmpirgadercvsfgvnmgdyhlnhqqgetwlrvkgekvlnvkemklsgqhnytnal
aalaladaaglprasslkalttft

Sequence, based on observed residues (ATOM records):

>d5a5fa2 c.72.2.1 (A:94-297) automated matches {Escherichia coli [TaxId: 83333]}
dielfcreaqapivaitgsngkstvttlvgemakaagvnvgvggniglpalmllddecel
yvlelssfqlettsslqavaatilnvtedhmdrypfglqqyraaklriyenakvcvvnad
daltmpircvsfgvnmgdyhlnhqqgetwlrvkgekvlnvkemklsgqhnytnalaalal
adaaglprasslkalttft

Timeline for d5a5fa2:

• d5a5fa2 first appeared in SCOPe 2.06
  
• d5a5fa2 appears in SCOPe 2.07