Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. Class b: All beta proteins [48724] (180 folds)
  3. Fold b.3: Prealbumin-like [49451] (8 superfamilies)
    sandwich; 7 strands in 2 sheets, greek-key
    variations: some members have additional 1-2 strands to common fold
  4. Superfamily b.3.1: Starch-binding domain-like [49452] (4 families) (S)
  5. Family b.3.1.0: automated matches [254199] (1 protein)
    not a true family
  6. Protein automated matches [254436] (5 species)
    not a true protein

Species:

  1. Bacillus cereus [TaxId:1396] [254918] (3 PDB entries)
    1. Domain for 1ven:
    2. Domain for 1veo:
    3. Domain for 1vep:
  2. Bacillus clarkii [TaxId:79879] [256325] (1 PDB entry)
  3. Fungus (Aspergillus aculeatus) [TaxId:5053] [255686] (1 PDB entry)
  4. Klebsiella pneumoniae [TaxId:573] [359371] (9 PDB entries)
    1. Domain for 5yn2:
    2. Domain for 5yn7:
    3. Domain for 5yna:
    4. Domain for 5ync:
    5. Domain for 5ynd:
    6. Domain for 5yne:
    7. Domain for 5ynh:
    8. Domains for 6j33:
      1. Domain d6j33a1: 6j33 A:32-162 [374137]
        Other proteins in same PDB: d6j33a2, d6j33a3, d6j33a4, d6j33a5, d6j33b2, d6j33b3, d6j33b4, d6j33b5
        automated match to d2fhfa3
        complexed with act, ca, mg
      2. Domain d6j33b1: 6j33 B:31-162 [374254]
        Other proteins in same PDB: d6j33a2, d6j33a3, d6j33a4, d6j33a5, d6j33b2, d6j33b3, d6j33b4, d6j33b5
        automated match to d2fhfa3
        complexed with act, ca, mg
    9. Domains for 6j35:
      1. Domain d6j35a1: 6j35 A:32-162 [374434]
        Other proteins in same PDB: d6j35a2, d6j35a3, d6j35a4, d6j35a5, d6j35b2, d6j35b3, d6j35b4, d6j35b5
        automated match to d2fhfa3
        complexed with ca, gol, mg; mutant
      2. Domain d6j35b1: 6j35 B:31-162 [374125]
        Other proteins in same PDB: d6j35a2, d6j35a3, d6j35a4, d6j35a5, d6j35b2, d6j35b3, d6j35b4, d6j35b5
        automated match to d2fhfa3
        complexed with ca, gol, mg; mutant
  5. Paenibacillus macerans [TaxId:44252] [256326] (4 PDB entries)
    1. Domain for 3wms:
    2. Domain for 4jcl:
    3. Domain for 6aij:
    4. Domain for 6l2h:

More info for Protein automated matches from b.3.1.0: automated matches

Timeline for Protein automated matches from b.3.1.0: automated matches: